mRNA_D-dichotoma_M_contig1080.701.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1080.701.1
Unique NamemRNA_D-dichotoma_M_contig1080.701.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1080.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1080contigD-dichotoma_M_contig1080:64951..65577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size611
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1080.701.1prot_D-dichotoma_M_contig1080.701.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1080 65187..65562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.9284997-UTR-D-dichotoma_M_contig1080:64950..651861622927576.9284997-UTR-D-dichotoma_M_contig1080:64950..65186Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1080 64951..65186 +
1690798045.0918777-UTR-D-dichotoma_M_contig1080:64950..651861690798045.0918777-UTR-D-dichotoma_M_contig1080:64950..65186Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1080 64951..65186 +
1622927578.4447021-UTR-D-dichotoma_M_contig1080:65562..655771622927578.4447021-UTR-D-dichotoma_M_contig1080:65562..65577Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1080 65563..65577 +
1690798045.1217988-UTR-D-dichotoma_M_contig1080:65562..655771690798045.1217988-UTR-D-dichotoma_M_contig1080:65562..65577Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1080 65563..65577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.942434-CDS-D-dichotoma_M_contig1080:65186..653811622927576.942434-CDS-D-dichotoma_M_contig1080:65186..65381Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 65187..65381 +
1690798045.1010206-CDS-D-dichotoma_M_contig1080:65186..653811690798045.1010206-CDS-D-dichotoma_M_contig1080:65186..65381Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 65187..65381 +
1622927576.9559386-CDS-D-dichotoma_M_contig1080:65397..655621622927576.9559386-CDS-D-dichotoma_M_contig1080:65397..65562Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 65398..65562 +
1690798045.1091633-CDS-D-dichotoma_M_contig1080:65397..655621690798045.1091633-CDS-D-dichotoma_M_contig1080:65397..65562Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 65398..65562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1080.701.1

>prot_D-dichotoma_M_contig1080.701.1 ID=prot_D-dichotoma_M_contig1080.701.1|Name=mRNA_D-dichotoma_M_contig1080.701.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=120bp
MIPYTVILPATDHLAESIQAWGMSISIGWNAIYDVASLYSFKWRWGCVSF
GVAGVALVSCIPELTDQNRSSRQLGRSWKCFVFSSCRIQGLESCSGIRTP
CFSYQDQYIFWVHFGMFVL*
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mRNA from alignment at D-dichotoma_M_contig1080:64951..65577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1080.701.1 ID=mRNA_D-dichotoma_M_contig1080.701.1|Name=mRNA_D-dichotoma_M_contig1080.701.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=627bp|location=Sequence derived from alignment at D-dichotoma_M_contig1080:64951..65577+ (Dictyota dichotoma ODC1387m male)
TCAGTCAAAAGCAGAGGGTGAGGGTAGCGGGGTAACGAAAGGCAGCGGGA
AACTGCAGAATTCACCAGATAACGTCTCACCGTCCGACGGCGAAGGAGGG
GCAGTGGAGTCGGATTCGAGAAACTCTCCCGAAAAAGAGGAATCGGGGTG
TGAAACAAGGGAGATGCAGTGCTCAAGGGCGATGGGCATCGTCCAGAATC
TTGCGCGGATGGTAAGGTCTTCTTGATTTAGTGTTCATGATTCCGTATAC
CGTCATCCTGCCTGCGACTGATCACCTAGCTGAATCCATACAGGCATGGG
GCATGTCAATCTCGATCGGATGGAATGCGATTTATGATGTAGCTTCGCTT
TACTCCTTTAAATGGAGGTGGGGATGCGTCTCGTTTGGTGTGGCTGGGGT
TGCTTTGGTTTCGTGTATCCCTGAGCTAACAAGGGCTATTGAGTCATGAT
CAGAACCGATCGAGCCGTCAGCTTGGCCGGTCATGGAAATGTTTTGTTTT
TTCGTCATGCAGGATTCAAGGTTTGGAGTCTTGCAGTGGAATTCGGACAC
CATGTTTCTCGTACCAAGATCAATACATTTTTTGGGTGCACTTTGGGATG
TTTGTGCTTTAGGTGGCTGTAAACGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1080:64951..65577+

>mRNA_D-dichotoma_M_contig1080.701.1 ID=mRNA_D-dichotoma_M_contig1080.701.1|Name=mRNA_D-dichotoma_M_contig1080.701.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=720bp|location=Sequence derived from alignment at D-dichotoma_M_contig1080:64951..65577+ (Dictyota dichotoma ODC1387m male)
ATGATTCCGTATACCGTCATCCTGCCTGCGACTGATCACCTAGCTGAATC
CATACAGGCATGGGGCATGTCAATCTCGATCGGATGGAATGCGATTTATG
ATGTAGCTTCGCTTTACTCCTTTAAATGGAGGTGGGGATGCGTCTCGTTT
GGTGTGGCTGGGGTTGCTTTGGTTTCGTGTATCCCTGAGCTAACAATGAT
TCCGTATACCGTCATCCTGCCTGCGACTGATCACCTAGCTGAATCCATAC
AGGCATGGGGCATGTCAATCTCGATCGGATGGAATGCGATTTATGATGTA
GCTTCGCTTTACTCCTTTAAATGGAGGTGGGGATGCGTCTCGTTTGGTGT
GGCTGGGGTTGCTTTGGTTTCGTGTATCCCTGAGCTAACAGATCAGAACC
GATCGAGCCGTCAGCTTGGCCGGTCATGGAAATGTTTTGTTTTTTCGTCA
TGCAGGATTCAAGGTTTGGAGTCTTGCAGTGGAATTCGGACACCATGTTT
CTCGTACCAAGATCAATACATTTTTTGGGTGCACTTTGGGATGTTTGTGC
TTTAGGATCAGAACCGATCGAGCCGTCAGCTTGGCCGGTCATGGAAATGT
TTTGTTTTTTCGTCATGCAGGATTCAAGGTTTGGAGTCTTGCAGTGGAAT
TCGGACACCATGTTTCTCGTACCAAGATCAATACATTTTTTGGGTGCACT
TTGGGATGTTTGTGCTTTAG
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