mRNA_D-dichotoma_M_contig108.693.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig108.693.1
Unique NamemRNA_D-dichotoma_M_contig108.693.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A3L6VD19_9STRA (Chromo domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VD19_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 9.250e-7
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+A +   ++     EY  LV W+GLD+DEA+WEPV  ++ED P+V +R
Sbjct:   19 FHVAKLGDVRE--ENGEYQALVYWLGLDEDEASWEPVHSLYEDIPIVFRR 66
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BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A024TL02_9STRA (Chromo domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TL02_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.120e-6
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+  +E  + AA G  Y V V+W+GLD +E++WEPV  + ED PVVL++
Sbjct:   16 FHVERLEEARVAANG-RYEVRVKWLGLDAEESSWEPVENLLEDIPVVLRK 64
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BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A3R6YA92_9STRA (Chromo domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YA92_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.800e-6
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+A +   ++     EY  LV W+GLD+DEA+WEPV  ++ED P+V +R
Sbjct:  118 FHVAKLGDVRE--ENGEYQALVYWLGLDEDEASWEPVRSLYEDIPIVFRR 165
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BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A6G0WUQ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUQ0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.180e-5
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+A + G  +   G EY  LV W+GLD+DEA+WEPV  ++ED PVV +R
Sbjct: 1525 FHVARL-GSVRVENG-EYQALVYWLGLDEDEASWEPVQSLYEDIPVVFRR 1572
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BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A024TQN1_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQN1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.550e-5
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+  +E  + AA G  Y VLV+W+GLD +E++WEP + + ED PV L++
Sbjct:   45 FHVERLEEVRVAANG-RYEVLVKWLGLDAEESSWEPAANLLEDIPVALRK 93
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BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: W4H0A6_9STRA (Chromo domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H0A6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.660e-5
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+A +   ++     EY  LV W+GLD+DEA+WEPV  + ED P+V +R
Sbjct:   45 FHVAKLGNVRED--NGEYQALVYWLGLDEDEASWEPVRSLNEDIPIVFRR 92
[Close]
BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A024UI06_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI06_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.600e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+  +E  +K A G  + VLV+W+GL++DE++WEP   + ED PVV ++
Sbjct:  259 FHVERLEKVRKVADGS-FQVLVKWLGLEEDESSWEPAKNLLEDIPVVFRK 307
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BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A024TE76_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE76_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.930e-5
Identity = 21/50 (42.00%), Postives = 34/50 (68.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+  +E  +K A G  + VLV+W+GL++DE++WE    + ED PVV ++
Sbjct:   24 FHVERLEKVRKVADGS-FQVLVKWLGLEEDESSWELAKNLLEDIPVVFRK 72
[Close]
BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A6A5ARP5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ARP5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.250e-5
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = -1 
Query:  450 FHIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 599
            FH+A   G  +   G EY  LV W+GLD+DEA+ EPV  ++ED P+V +R
Sbjct:   30 FHVAKF-GDTREGNG-EYQALVYWLGLDEDEASLEPVRFLYEDIPIVFRR 77
[Close]
BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Match: A0A024TN15_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TN15_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.040e-5
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = -1 
Query:  450 HIASIEGCKKAARGDEYMVLVRWMGLDDDEATWEPVSLVFEDAPVVLKR 596
            H+    G  + AR D + V+V W+GL DDEATWEP+S + ED P++L+R
Sbjct:  336 HMVRAFGGVRPAR-DSFEVMVYWLGLSDDEATWEPLSTLLEDVPILLQR 383
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig108.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A3L6VD19_9STRA9.250e-746.00Chromo domain-containing protein (Fragment) n=1 Ta... [more]
A0A024TL02_9STRA2.120e-648.00Chromo domain-containing protein (Fragment) n=1 Ta... [more]
A0A3R6YA92_9STRA5.800e-646.00Chromo domain-containing protein n=3 Tax=Aphanomyc... [more]
A0A6G0WUQ0_9STRA1.180e-552.00Uncharacterized protein n=3 Tax=Aphanomyces euteic... [more]
A0A024TQN1_9STRA1.550e-546.00Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
W4H0A6_9STRA1.660e-546.00Chromo domain-containing protein n=8 Tax=Aphanomyc... [more]
A0A024UI06_9STRA3.600e-544.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TE76_9STRA6.930e-542.00Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6A5ARP5_9STRA7.250e-548.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TN15_9STRA8.040e-548.98Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig108contigD-dichotoma_M_contig108:487299..487897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig108.693.1prot_D-dichotoma_M_contig108.693.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig108 487590..487895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.3062263-UTR-D-dichotoma_M_contig108:487298..4875891622927575.3062263-UTR-D-dichotoma_M_contig108:487298..487589Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 487299..487589 +
1690798044.0433645-UTR-D-dichotoma_M_contig108:487298..4875891690798044.0433645-UTR-D-dichotoma_M_contig108:487298..487589Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 487299..487589 +
1622927575.3331592-UTR-D-dichotoma_M_contig108:487895..4878971622927575.3331592-UTR-D-dichotoma_M_contig108:487895..487897Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 487896..487897 +
1690798044.06498-UTR-D-dichotoma_M_contig108:487895..4878971690798044.06498-UTR-D-dichotoma_M_contig108:487895..487897Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 487896..487897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927575.3195655-CDS-D-dichotoma_M_contig108:487589..4878951622927575.3195655-CDS-D-dichotoma_M_contig108:487589..487895Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 487590..487895 +
1690798044.0566275-CDS-D-dichotoma_M_contig108:487589..4878951690798044.0566275-CDS-D-dichotoma_M_contig108:487589..487895Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 487590..487895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig108.693.1

>prot_D-dichotoma_M_contig108.693.1 ID=prot_D-dichotoma_M_contig108.693.1|Name=mRNA_D-dichotoma_M_contig108.693.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=102bp
MYFDGITRDQASSIPTETPILQQTPESPSYTENPYRSRSLLFSSVGSRTL
LGSLFSTTGASSNTSETGSHVASSSSRPIHLTKTMYSSPLAAFLHPSILA
I*
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mRNA from alignment at D-dichotoma_M_contig108:487299..487897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig108.693.1 ID=mRNA_D-dichotoma_M_contig108.693.1|Name=mRNA_D-dichotoma_M_contig108.693.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=599bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:487299..487897+ (Dictyota dichotoma ODC1387m male)
GCGCTGGTTGAATGTCCGCGCCAGTTTTGATCCTCATGACCATCCCCGCA
CCAACCATTCCTCAAATAAACTCCACAAAAGTAGCTCCAAACCACTGACA
TATCTGAATGTCCACAACTTTCCCCAGCACAACTCTGCCAATCCTCAATT
TACTGCATCATGAATCCACAAAACGCCAAATACTACTTCAAACCCCAGAC
CCATCCAAATGCCCACAATATGACCATCAAACCTTGTCAACGGTCCCTTT
CCCCGGAAATTCCTCAGAAATGCCCATCATGAACTCCTGGAATGTATTTC
GATGGCATCACCCGTGATCAGGCGTCATCAATTCCTACGGAAACGCCAAT
TCTGCAGCAAACCCCGGAATCACCATCCTACACCGAAAACCCATATCGCT
CCCGAAGTCTCCTCTTCTCCTCCGTTGGCAGCCGCACCCTTTTAGGCTCC
CTTTTCAGCACCACCGGGGCGTCCTCAAACACGAGCGAAACTGGTTCCCA
TGTCGCCTCGTCATCATCCAGACCCATCCATCTCACCAAAACCATGTACT
CGTCACCTCTCGCCGCCTTCTTGCACCCCTCAATACTTGCAATATGAAA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig108:487299..487897+

>mRNA_D-dichotoma_M_contig108.693.1 ID=mRNA_D-dichotoma_M_contig108.693.1|Name=mRNA_D-dichotoma_M_contig108.693.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=612bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:487299..487897+ (Dictyota dichotoma ODC1387m male)
ATGTATTTCGATGGCATCACCCGTGATCAGGCGTCATCAATTCCTACGGA
AACGCCAATTCTGCAGCAAACCCCGGAATCACCATCCTACACCGAAAACC
CATATCGCTCCCGAAGTCTCCTCTTCTCCTCCGTTGGCAGCCGCACCCTT
TTAGGCTCCCTTTTCAGCACCACCGGGGCGTCCTCAAACACGAGCGAAAC
TGGTTCCCATGTCGCCTCGTCATCATCCAGACCCATCCATCTCACCAAAA
CCATGTACTCGTCACCTCTCGCCGCCTTCTTGCACCCCTCAATACTTGCA
ATATGAATGTATTTCGATGGCATCACCCGTGATCAGGCGTCATCAATTCC
TACGGAAACGCCAATTCTGCAGCAAACCCCGGAATCACCATCCTACACCG
AAAACCCATATCGCTCCCGAAGTCTCCTCTTCTCCTCCGTTGGCAGCCGC
ACCCTTTTAGGCTCCCTTTTCAGCACCACCGGGGCGTCCTCAAACACGAG
CGAAACTGGTTCCCATGTCGCCTCGTCATCATCCAGACCCATCCATCTCA
CCAAAACCATGTACTCGTCACCTCTCGCCGCCTTCTTGCACCCCTCAATA
CTTGCAATATGA
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