mRNA_D-dichotoma_M_contig108.694.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig108.694.1 vs. uniprot
Match: D8LC76_ECTSI (Possible CAMK/ Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC76_ECTSI) HSP 1 Score: 129 bits (324), Expect = 1.350e-26 Identity = 285/419 (68.02%), Postives = 324/419 (77.33%), Query Frame = 3
Query: 627 QSSEGLARIVKMVATPARTKPSKALCTSKFLQLFASAASAQESYAVLACVHKQMNGQGWERRGGWGSYLVRKSQAELDDGRVYGVKSDNGLVVALLLKSNNMRGRIPPILARLGSLKCMNFADNHISGSIPGELGFLLQLEILQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPRYDAE--RQAG-----GLRSLDLGKNNLDAPFPDLAGLSDLRSLELDNNQVFGTLEGSISQSCPNLFRLHLQNNRLDGEIPASLGSLSRLEIL 1862
QS EG + + K+ + + K+L+LFA + SA ++Y VLA +H++MNG GW RRGGW SYLVR+S+AELD+GRVYGV+S G V L+L SNN+ GRIPPI+ARL SL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P ++ R +G G+RSL+LG N ++ PFPDL G+ L+SL LD N+++G L S++++CPNL+RL LQ NRL GEIP SLG L++LE L
Sbjct: 398 QSDEGRSMMEKLTKVTVAVESPATKISRKYLKLFAPSNSAHDTYKVLAALHRRMNGTGWPRRGGWDSYLVRRSRAELDEGRVYGVRSKEGSVEYLILSSNNVCGRIPPIIARLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQFPVKFQFWFLRSSGATGGSGMRSLNLGSNEVEEPFPDLQGMEQLQSLVLDQNRMYGGLTESLAETCPNLYRLSLQKNRLSGEIPHSLGMLTKLEHL 816
BLAST of mRNA_D-dichotoma_M_contig108.694.1 vs. uniprot
Match: A0A2P6SQ79_ROSCH (Putative non-specific serine/threonine protein kinase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SQ79_ROSCH) HSP 1 Score: 53.5 bits (127), Expect = 3.230e-5 Identity = 25/67 (37.31%), Postives = 42/67 (62.69%), Query Frame = 3
Query: 1659 NNLDAPFPDLAGLSDLRSLELDNNQVFGTLEGSISQSCPNLFRLHLQNNRLDGEIPASLGSLSRLEI 1859
N L+ P +G ++ ++EL NN++ GT+ + ++ L L L +N+LDG IPASL SL R+++
Sbjct: 4 NKLEGSIPSFSGAKNVHTIELSNNRLTGTINSTHWRNLTKLSSLCLNSNKLDGNIPASLFSLPRIDL 70 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig108.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig108.694.1 >prot_D-dichotoma_M_contig108.694.1 ID=prot_D-dichotoma_M_contig108.694.1|Name=mRNA_D-dichotoma_M_contig108.694.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=866bp MANSVGTVPDLDGKITEGITHVQVFSASTSSNGAADGAQLAQSAPDHSYEback to top mRNA from alignment at D-dichotoma_M_contig108:527453..536077- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig108.694.1 ID=mRNA_D-dichotoma_M_contig108.694.1|Name=mRNA_D-dichotoma_M_contig108.694.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=8625bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:527453..536077- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig108:527453..536077- >mRNA_D-dichotoma_M_contig108.694.1 ID=mRNA_D-dichotoma_M_contig108.694.1|Name=mRNA_D-dichotoma_M_contig108.694.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=5196bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:527453..536077- (Dictyota dichotoma ODC1387m male)back to top |