mRNA_D-dichotoma_M_contig108.688.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig108.688.1
Unique NamemRNA_D-dichotoma_M_contig108.688.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig108.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig108contigD-dichotoma_M_contig108:233691..235266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size825
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig108.688.1prot_D-dichotoma_M_contig108.688.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig108 233691..234945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.9455051-CDS-D-dichotoma_M_contig108:233690..2338281622927574.9455051-CDS-D-dichotoma_M_contig108:233690..233828Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 233691..233828 -
1690798043.8889847-CDS-D-dichotoma_M_contig108:233690..2338281690798043.8889847-CDS-D-dichotoma_M_contig108:233690..233828Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 233691..233828 -
1622927574.9668133-CDS-D-dichotoma_M_contig108:234565..2349241622927574.9668133-CDS-D-dichotoma_M_contig108:234565..234924Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 234566..234924 -
1690798043.8979232-CDS-D-dichotoma_M_contig108:234565..2349241690798043.8979232-CDS-D-dichotoma_M_contig108:234565..234924Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 234566..234924 -
1622927574.9804282-CDS-D-dichotoma_M_contig108:234938..2349451622927574.9804282-CDS-D-dichotoma_M_contig108:234938..234945Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 234939..234945 -
1690798043.9062872-CDS-D-dichotoma_M_contig108:234938..2349451690798043.9062872-CDS-D-dichotoma_M_contig108:234938..234945Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 234939..234945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.99997-UTR-D-dichotoma_M_contig108:234945..2352661622927574.99997-UTR-D-dichotoma_M_contig108:234945..235266Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 234946..235266 -
1690798043.9146175-UTR-D-dichotoma_M_contig108:234945..2352661690798043.9146175-UTR-D-dichotoma_M_contig108:234945..235266Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 234946..235266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig108.688.1

>prot_D-dichotoma_M_contig108.688.1 ID=prot_D-dichotoma_M_contig108.688.1|Name=mRNA_D-dichotoma_M_contig108.688.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=168bp
MYCFGRPIVYCTLQQLSIKLHTDCVRACCGLKSSWALDLPFLALSLLFCF
FSRVMPRKSRRALHYQKAAARLVESNEKRHRDRLMREKREQREEGRKARG
RLSKQVKRGLNRAKGEIISYGEMRLVLLLYFNLVFKKDVKNGDALTFVSE
ALGIGESTIRDAREEFV*
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mRNA from alignment at D-dichotoma_M_contig108:233691..235266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig108.688.1 ID=mRNA_D-dichotoma_M_contig108.688.1|Name=mRNA_D-dichotoma_M_contig108.688.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1576bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:233691..235266- (Dictyota dichotoma ODC1387m male)
TGCAGTATCTTGTTGCTGAACATCCTAAAGTATTCTGTAAGCCGAGAGCT
CCAGCCTGAGGTGAGTCTTACCACCATCGTTTCCCTTGTCGTAGGTCCTT
CACTGTATATGAGTCTTTGCGTTCCCTCTGTGTAAGGGGAAAGCCGAGAG
CATGATGCCTACTGTAGAAGGAAACATGCCCGTAGTACCTCCGGAATTCT
CAGCTGTTGCAGGCCATCATCGTCTCTGGACTGCTTAAGCAGGTCGGTTA
AGATGAACATGTACTGGTATAAAATCGACAACATGTGCCAATGACGTACA
GTAAGTCGTCTAAAGTACTGTATGTACTGTACTGTATAATAGGCTTTGGT
AGGCCGATAGTCTACTGTACTTTACAGCAGCTGAGCATCAAATTGCATAC
GGACTGTGTAAGAGCATGCTGTGGTCTGAAATCCAGTTGGGCACTGGACC
TCCCGTTCCTTGCCCTGTCTTTGCTGTTCTGTTTTTTCTCGAGAGTCATG
CCTCGCAAGAGTAGGCGAGCTCTACATTACCAAAAAGCAGCCGCAAGGCT
GGTGGAATCCAACGAAAAGAGACACCGTGACCGCTTGATGAGGGAAAAGA
GGGAACAAAGAGAAGAGGGGCGTAAAGCACGCGGAAGGCTTTCTAAGCAA
GTGAAGAGGGGGCTCAATCGCGCGAAAGGAGAAATCATTTCGTACGGCGA
GGTAAGACGCAGCGTCGAGAAGAGTTCTTCACCGACTAACCCACCTGATG
AATCGAAGTTATTGTACTGTACTGTGTTGTTTTGGAATCCACGTCCTATC
TCCCGAAAACAGTCATCTGCTTTGTCGCGTTTGGGCCCGAGCAATTCTCC
GGACGAGGTTACTGTACAGTAGTTCAATCATGGCATATATCTAATGCGTC
TCAGGGTTAGGGTTCACATGAACATCCTTGCGTACGCAATCCAAAGCCAA
CGACTTCGAGCTTTGCGACTGGAGGTTGAGGGCAGGAAACTTGCACTGTA
CATCAGGTTGAAAAGCATAATATTCGCAATGAAACACAGGCTCAGTAGAG
TACAGTACTGCGTAATCGAAGAAGCGTGCCCTTAGGGGTTACGTTCGTAT
GGTAAACCTCTCGCTAGATGAAACTTCCGGTGCGAAAGAGAAATCACTGT
ACTGTAGCTGTAGTCTTGTCAGTGAGGGGGTATTGTAGGCACTTATTTCA
ATAGGTGTGGCTAAAATGACTCCTCGATGCAGCAAGGTGAAATATCCTAC
AGTAGTTCAGCCCCTCTTTGAAATCACCGTTATCGATGTCGCCAGTACGC
CCACCACGTACATCCTGTTGTTGAAACAGTACATTCTGTACCGTGCTGAC
GTAGGCACCGTAGACATGGGCTATCTTCATCCTGACCACTTCAGTATAAC
CAAAAGCTATCCTCCTTGCTTGCCATAAATTACCGCAGATGAGGCTGGTG
CTGCTCCTTTACTTTAACCTCGTGTTCAAGAAGGATGTAAAAAATGGCGA
CGCTCTGACATTCGTAAGCGAGGCGCTCGGGATCGGGGAATCTACCATCA
GGGACGCAAGGGAGGAGTTTGTATAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig108:233691..235266-

>mRNA_D-dichotoma_M_contig108.688.1 ID=mRNA_D-dichotoma_M_contig108.688.1|Name=mRNA_D-dichotoma_M_contig108.688.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1008bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:233691..235266- (Dictyota dichotoma ODC1387m male)
ATGTACTATGTACTGCTTTGGTAGGCCGATAGTCTACTGTACTTTACAGC
AGCTGAGCATCAAATTGCATACGGACTGTGTAAGAGCATGCTGTGGTCTG
AAATCCAGTTGGGCACTGGACCTCCCGTTCCTTGCCCTGTCTTTGCTGTT
CTGTTTTTTCTCGAGAGTCATGCCTCGCAAGAGTAGGCGAGCTCTACATT
ACCAAAAAGCAGCCGCAAGGCTGGTGGAATCCAACGAAAAGAGACACCGT
GACCGCTTGATGAGGGAAAAGAGGGAACAAAGAGAAGAGGGGCGTAAAGC
ACGCGGAAGGCTTTCTAAGCAAGTGAAGAGGGGGCTCAATCGCGCGAAAG
GAGAAATCATTTCGTACGGCGAGGCTTTGGTAGGCCGATAGTCTACTGTA
CTTTACAGCAGCTGAGCATCAAATTGCATACGGACTGTGTAAGAGCATGC
TGTGGTCTGAAATCCAGTTGGGCACTGGACCTCCCGTTCCTTGCCCTGTC
TTTGCTGTTCTGTTTTTTCTCGAGAGTCATGCCTCGCAAGAGTAGGCGAG
CTCTACATTACCAAAAAGCAGCCGCAAGGCTGGTGGAATCCAACGAAAAG
AGACACCGTGACCGCTTGATGAGGGAAAAGAGGGAACAAAGAGAAGAGGG
GCGTAAAGCACGCGGAAGGCTTTCTAAGCAAGTGAAGAGGGGGCTCAATC
GCGCGAAAGGAGAAATCATTTCGTACGGCGAGATGAGGCTGGTGCTGCTC
CTTTACTTTAACCTCGTGTTCAAGAAGGATGTAAAAAATGGCGACGCTCT
GACATTCGTAAGCGAGGCGCTCGGGATCGGGGAATCTACCATCAGGGACG
CAAGGGAGGAGTTTGTATAGATGAGGCTGGTGCTGCTCCTTTACTTTAAC
CTCGTGTTCAAGAAGGATGTAAAAAATGGCGACGCTCTGACATTCGTAAG
CGAGGCGCTCGGGATCGGGGAATCTACCATCAGGGACGCAAGGGAGGAGT
TTGTATAG
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