mRNA_D-dichotoma_M_contig1078.678.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1078.678.1
Unique NamemRNA_D-dichotoma_M_contig1078.678.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1078.678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1078contigD-dichotoma_M_contig1078:119361..119721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.8321798-UTR-D-dichotoma_M_contig1078:119360..1193851622927573.8321798-UTR-D-dichotoma_M_contig1078:119360..119385Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1078 119361..119385 +
1690798043.2119339-UTR-D-dichotoma_M_contig1078:119360..1193851690798043.2119339-UTR-D-dichotoma_M_contig1078:119360..119385Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1078 119361..119385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.8452864-CDS-D-dichotoma_M_contig1078:119385..1197211622927573.8452864-CDS-D-dichotoma_M_contig1078:119385..119721Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1078 119386..119721 +
1690798043.222957-CDS-D-dichotoma_M_contig1078:119385..1197211690798043.222957-CDS-D-dichotoma_M_contig1078:119385..119721Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1078 119386..119721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1078.678.1prot_D-dichotoma_M_contig1078.678.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1078 119386..119721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1078.678.1

>prot_D-dichotoma_M_contig1078.678.1 ID=prot_D-dichotoma_M_contig1078.678.1|Name=mRNA_D-dichotoma_M_contig1078.678.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=112bp
MMGTCKELRLSGWQDKGHRRYYLGEGNARDREKCIKERRLFVVGVEQRVV
CLELRVVELLLAGLEVEKGVVDLWMGDPKAKHCGYYPKLLRSRLAVSASL
IEVDRVAWFVYV
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mRNA from alignment at D-dichotoma_M_contig1078:119361..119721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1078.678.1 ID=mRNA_D-dichotoma_M_contig1078.678.1|Name=mRNA_D-dichotoma_M_contig1078.678.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=361bp|location=Sequence derived from alignment at D-dichotoma_M_contig1078:119361..119721+ (Dictyota dichotoma ODC1387m male)
GTGACTTGCGCCGCGGAATCGTGCAATGATGGGTACCTGTAAAGAGCTTC
GTCTCTCGGGATGGCAGGACAAGGGGCATCGGAGGTACTACCTTGGAGAG
GGAAACGCGCGAGACAGAGAGAAGTGCATCAAGGAACGGCGGTTGTTTGT
AGTTGGCGTGGAGCAGCGTGTCGTTTGCTTGGAGTTAAGAGTTGTCGAAC
TTCTTCTCGCTGGACTTGAAGTGGAAAAGGGGGTGGTGGATCTGTGGATG
GGTGATCCGAAGGCGAAGCATTGCGGGTATTACCCGAAGCTTCTTCGGTC
GCGTTTGGCCGTGTCTGCCTCTCTCATTGAAGTCGACCGTGTCGCATGGT
TTGTGTACGTA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1078:119361..119721+

>mRNA_D-dichotoma_M_contig1078.678.1 ID=mRNA_D-dichotoma_M_contig1078.678.1|Name=mRNA_D-dichotoma_M_contig1078.678.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=672bp|location=Sequence derived from alignment at D-dichotoma_M_contig1078:119361..119721+ (Dictyota dichotoma ODC1387m male)
ATGATGGGTACCTGTAAAGAGCTTCGTCTCTCGGGATGGCAGGACAAGGG
GCATCGGAGGTACTACCTTGGAGAGGGAAACGCGCGAGACAGAGAGAAGT
GCATCAAGGAACGGCGGTTGTTTGTAGTTGGCGTGGAGCAGCGTGTCGTT
TGCTTGGAGTTAAGAGTTGTCGAACTTCTTCTCGCTGGACTTGAAGTGGA
AAAGGGGGTGGTGGATCTGTGGATGGGTGATCCGAAGGCGAAGCATTGCG
GGTATTACCCGAAGCTTCTTCGGTCGCGTTTGGCCGTGTCTGCCTCTCTC
ATTGAAGTCGACCGTGTCGCATGGTTTGTGTACGTAATGATGGGTACCTG
TAAAGAGCTTCGTCTCTCGGGATGGCAGGACAAGGGGCATCGGAGGTACT
ACCTTGGAGAGGGAAACGCGCGAGACAGAGAGAAGTGCATCAAGGAACGG
CGGTTGTTTGTAGTTGGCGTGGAGCAGCGTGTCGTTTGCTTGGAGTTAAG
AGTTGTCGAACTTCTTCTCGCTGGACTTGAAGTGGAAAAGGGGGTGGTGG
ATCTGTGGATGGGTGATCCGAAGGCGAAGCATTGCGGGTATTACCCGAAG
CTTCTTCGGTCGCGTTTGGCCGTGTCTGCCTCTCTCATTGAAGTCGACCG
TGTCGCATGGTTTGTGTACGTA
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