mRNA_D-dichotoma_M_contig1076.670.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1076.670.1
Unique NamemRNA_D-dichotoma_M_contig1076.670.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1076.670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1076contigD-dichotoma_M_contig1076:82600..82980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.1979244-CDS-D-dichotoma_M_contig1076:82599..829351622927573.1979244-CDS-D-dichotoma_M_contig1076:82599..82935Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1076 82600..82935 +
1690798042.928445-CDS-D-dichotoma_M_contig1076:82599..829351690798042.928445-CDS-D-dichotoma_M_contig1076:82599..82935Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1076 82600..82935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.2098258-UTR-D-dichotoma_M_contig1076:82935..829801622927573.2098258-UTR-D-dichotoma_M_contig1076:82935..82980Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 82936..82980 +
1690798042.9394348-UTR-D-dichotoma_M_contig1076:82935..829801690798042.9394348-UTR-D-dichotoma_M_contig1076:82935..82980Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 82936..82980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1076.670.1prot_D-dichotoma_M_contig1076.670.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1076 82600..82935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1076.670.1

>prot_D-dichotoma_M_contig1076.670.1 ID=prot_D-dichotoma_M_contig1076.670.1|Name=mRNA_D-dichotoma_M_contig1076.670.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=112bp
NLSKKLRTLGIGESRERIDHEGITLTVCWKIRSCCTFRTIPRQLSVSPSL
AYVTSTRQVPTFATRNSYPSIVSDVVPLWLFTVFDSDSLCSNSKIQYYVT
LSTTVASQVAH*
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mRNA from alignment at D-dichotoma_M_contig1076:82600..82980+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1076.670.1 ID=mRNA_D-dichotoma_M_contig1076.670.1|Name=mRNA_D-dichotoma_M_contig1076.670.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=381bp|location=Sequence derived from alignment at D-dichotoma_M_contig1076:82600..82980+ (Dictyota dichotoma ODC1387m male)
AACCTTTCAAAAAAATTGAGAACCCTCGGCATCGGAGAGTCCCGAGAACG
CATCGATCATGAGGGTATTACGCTCACAGTTTGTTGGAAGATCAGATCAT
GTTGTACTTTCAGGACCATCCCGAGGCAGCTCAGTGTGTCACCTAGCCTA
GCATATGTCACATCCACACGACAAGTGCCTACATTCGCCACCAGAAATAG
CTACCCTAGTATAGTAAGTGACGTTGTGCCATTATGGCTCTTTACCGTTT
TTGACTCGGATTCACTATGTAGTAACTCGAAGATCCAGTATTATGTTACT
CTGTCAACTACCGTAGCCTCCCAAGTAGCTCATTAAGCTGCAACGTCGGT
AGCTACGAGGTACGGTATGTTGAGGTCACGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1076:82600..82980+

>mRNA_D-dichotoma_M_contig1076.670.1 ID=mRNA_D-dichotoma_M_contig1076.670.1|Name=mRNA_D-dichotoma_M_contig1076.670.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=672bp|location=Sequence derived from alignment at D-dichotoma_M_contig1076:82600..82980+ (Dictyota dichotoma ODC1387m male)
AACCTTTCAAAAAAATTGAGAACCCTCGGCATCGGAGAGTCCCGAGAACG
CATCGATCATGAGGGTATTACGCTCACAGTTTGTTGGAAGATCAGATCAT
GTTGTACTTTCAGGACCATCCCGAGGCAGCTCAGTGTGTCACCTAGCCTA
GCATATGTCACATCCACACGACAAGTGCCTACATTCGCCACCAGAAATAG
CTACCCTAGTATAGTAAGTGACGTTGTGCCATTATGGCTCTTTACCGTTT
TTGACTCGGATTCACTATGTAGTAACTCGAAGATCCAGTATTATGTTACT
CTGTCAACTACCGTAGCCTCCCAAGTAGCTCATTAAAACCTTTCAAAAAA
ATTGAGAACCCTCGGCATCGGAGAGTCCCGAGAACGCATCGATCATGAGG
GTATTACGCTCACAGTTTGTTGGAAGATCAGATCATGTTGTACTTTCAGG
ACCATCCCGAGGCAGCTCAGTGTGTCACCTAGCCTAGCATATGTCACATC
CACACGACAAGTGCCTACATTCGCCACCAGAAATAGCTACCCTAGTATAG
TAAGTGACGTTGTGCCATTATGGCTCTTTACCGTTTTTGACTCGGATTCA
CTATGTAGTAACTCGAAGATCCAGTATTATGTTACTCTGTCAACTACCGT
AGCCTCCCAAGTAGCTCATTAA
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