mRNA_D-dichotoma_M_contig107.630.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig107.630.1
Unique NamemRNA_D-dichotoma_M_contig107.630.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig107.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig107contigD-dichotoma_M_contig107:495460..496203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size744
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.67347-CDS-D-dichotoma_M_contig107:495459..4959181622927563.67347-CDS-D-dichotoma_M_contig107:495459..495918Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig107 495460..495918 +
1690798038.0351112-CDS-D-dichotoma_M_contig107:495459..4959181690798038.0351112-CDS-D-dichotoma_M_contig107:495459..495918Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig107 495460..495918 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.6879523-UTR-D-dichotoma_M_contig107:495918..4962031622927563.6879523-UTR-D-dichotoma_M_contig107:495918..496203Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig107 495919..496203 +
1690798038.043311-UTR-D-dichotoma_M_contig107:495918..4962031690798038.043311-UTR-D-dichotoma_M_contig107:495918..496203Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig107 495919..496203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig107.630.1prot_D-dichotoma_M_contig107.630.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig107 495460..495918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig107.630.1

>prot_D-dichotoma_M_contig107.630.1 ID=prot_D-dichotoma_M_contig107.630.1|Name=mRNA_D-dichotoma_M_contig107.630.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=153bp
SRKRCSSVIPCGRARHLRHLLTLSPSSGSLWIGKWCCCSQALRARPITEF
VRCAGRLCSLVGNRRLVVSPGSTTKGKPSKCRSCDKHASSTKSASTLLAA
ASFAVKEHSAASYACAALYSACSSPRQEQMQVVFELEICTERRQCAPVVR
QH*
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mRNA from alignment at D-dichotoma_M_contig107:495460..496203+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig107.630.1 ID=mRNA_D-dichotoma_M_contig107.630.1|Name=mRNA_D-dichotoma_M_contig107.630.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=744bp|location=Sequence derived from alignment at D-dichotoma_M_contig107:495460..496203+ (Dictyota dichotoma ODC1387m male)
TCCCGCAAGCGCTGCTCCAGTGTCATCCCTTGTGGGCGGGCGAGGCACCT
CCGGCACCTCCTCACGCTGTCACCCTCCAGTGGGTCTCTGTGGATTGGCA
AGTGGTGTTGCTGTTCTCAGGCGCTTAGGGCGCGCCCCATCACCGAGTTC
GTACGTTGTGCTGGTCGTCTCTGCTCCTTGGTTGGAAACCGTCGTCTCGT
CGTTTCACCCGGCAGCACAACAAAAGGCAAGCCGTCAAAGTGTCGCAGCT
GCGACAAGCACGCTTCTAGCACAAAATCTGCGAGCACTCTTCTCGCAGCC
GCTTCTTTTGCCGTGAAAGAGCACTCCGCCGCTTCATACGCGTGCGCGGC
TCTGTACAGCGCCTGCTCCTCCCCTCGTCAAGAGCAGATGCAAGTAGTAT
TCGAGCTCGAAATATGTACCGAAAGACGACAATGTGCGCCCGTCGTGCGT
CAGCACTAGGGAAATGTCGGTCATTTTCGGCGAGCCAAGTGGCCCTTCGG
TACGCGCCGGTAGCTCAGCCATGGTGGCACCGTCCGGGAAAGGCAAAGTC
GGGGTCCCGTCACCTGGCACCTCGGGTATAGGAGGTACCGCAGGTGCCAT
TGTGGCTGCTTGCGGTGGCGTCGTGGGCTCCTGGGCGTGCTCCACTCGAG
TTGGGGTAGTCGTACGGGAAGCCTGCTTAGCGTTCATGTTGTCTACTGGG
AACCACGCCTGAATTGCTGTAGTTATCTCTCGTAGGTGGGTAAT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig107:495460..496203+

>mRNA_D-dichotoma_M_contig107.630.1 ID=mRNA_D-dichotoma_M_contig107.630.1|Name=mRNA_D-dichotoma_M_contig107.630.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=918bp|location=Sequence derived from alignment at D-dichotoma_M_contig107:495460..496203+ (Dictyota dichotoma ODC1387m male)
TCCCGCAAGCGCTGCTCCAGTGTCATCCCTTGTGGGCGGGCGAGGCACCT
CCGGCACCTCCTCACGCTGTCACCCTCCAGTGGGTCTCTGTGGATTGGCA
AGTGGTGTTGCTGTTCTCAGGCGCTTAGGGCGCGCCCCATCACCGAGTTC
GTACGTTGTGCTGGTCGTCTCTGCTCCTTGGTTGGAAACCGTCGTCTCGT
CGTTTCACCCGGCAGCACAACAAAAGGCAAGCCGTCAAAGTGTCGCAGCT
GCGACAAGCACGCTTCTAGCACAAAATCTGCGAGCACTCTTCTCGCAGCC
GCTTCTTTTGCCGTGAAAGAGCACTCCGCCGCTTCATACGCGTGCGCGGC
TCTGTACAGCGCCTGCTCCTCCCCTCGTCAAGAGCAGATGCAAGTAGTAT
TCGAGCTCGAAATATGTACCGAAAGACGACAATGTGCGCCCGTCGTGCGT
CAGCACTAGTCCCGCAAGCGCTGCTCCAGTGTCATCCCTTGTGGGCGGGC
GAGGCACCTCCGGCACCTCCTCACGCTGTCACCCTCCAGTGGGTCTCTGT
GGATTGGCAAGTGGTGTTGCTGTTCTCAGGCGCTTAGGGCGCGCCCCATC
ACCGAGTTCGTACGTTGTGCTGGTCGTCTCTGCTCCTTGGTTGGAAACCG
TCGTCTCGTCGTTTCACCCGGCAGCACAACAAAAGGCAAGCCGTCAAAGT
GTCGCAGCTGCGACAAGCACGCTTCTAGCACAAAATCTGCGAGCACTCTT
CTCGCAGCCGCTTCTTTTGCCGTGAAAGAGCACTCCGCCGCTTCATACGC
GTGCGCGGCTCTGTACAGCGCCTGCTCCTCCCCTCGTCAAGAGCAGATGC
AAGTAGTATTCGAGCTCGAAATATGTACCGAAAGACGACAATGTGCGCCC
GTCGTGCGTCAGCACTAG
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