mRNA_D-dichotoma_M_contig1054.507.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1054.507.1
Unique NamemRNA_D-dichotoma_M_contig1054.507.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1054.507.1 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.940e-28
Identity = 103/244 (42.21%), Postives = 121/244 (49.59%), Query Frame = 1 
Query:  196 GEATAAASTGGEEKSGVYAAENRDVDRLSLVPGLTRLRDSSGXXXXXVVIRVVRMSGPHSSFLHMRVFPTTTAGQVCRKIGEKLRQSPAEQAEHVLIAIYERPV--VPGSGNAAGGVSHADIAEKGRQDEGGGLGGDRARS--ADPSAGRDRREGRIGRRQQHTHDRATAPVGSHSGRRGAEDRRRRRSRSGSGNTSVRHILHTFRPEERLGAVRLGIHEL-PLRLPRAAPEQHDELGTGAHDG 912
            G+ TAA +    E SGV              P L     S G     VVIR++ +SG H+SFLHMRVFP+TTAGQVCRKIGEKLRQ PAEQ E+VLIAIY RP   V  +G  + G  H   A  G  D G  +GGD   +  A  +AG  R E  +                         D RRRR       +S+RHILHTFR EERLG VRLG+ E      P+     HD    G  DG
Sbjct:  112 GDETAALAARTREGSGVAXXXXXXXXXXXSSPPLPVAAPSEG-----VVIRIL-ISGAHASFLHMRVFPSTTAGQVCRKIGEKLRQLPAEQNEYVLIAIYARPSRNVSDTGGGSNGPGHRHSA--GVADRGAAVGGDEVDNDGAGYTAGGVRDEHEL-----------------------RHDGRRRRRGEEEHQSSIRHILHTFRSEERLGEVRLGLPEPNSAGRPQNPANSHDRGARGDADG 324
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BLAST of mRNA_D-dichotoma_M_contig1054.507.1 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.000e-25
Identity = 102/245 (41.63%), Postives = 121/245 (49.39%), Query Frame = 1 
Query:  196 GEATAAASTGGEEKSGVYAAENRDVDRLSLVPGLTRLRDSSGXXXXXVVIRVVRMSGPHSSFLHMRVFPTTTAGQVCRKIGEKLRQSPAEQAEHVLIAIYERPV-----VPGSGNAAGGVSHADIAEKGRQDEGGGLGGDRARSADPSAGRDRREGRIGRRQQHTHDRATAPVGSHSGRRGAEDRRRRRSRSGSGNTSVRHILHTFRPEERLGAVRLGIHEL-PLRLPRAAPEQHDELGTGAHDG 912
            G+ TAA +    E SGV AA  ++    +L P L     S G     VVIRV+ +SG H+SFLHMRVFP+TTAGQVCRKIGEKLRQ PAEQ E+VLIAIY RP      +  +G  + G  H   A  G  D G  +GGD   +   SAG     GR                  H                    +S+RHILHTFR EERLG VRLG+ E      P+     HD    G  DG
Sbjct:  144 GDETAALAARPREGSGVTAAAAKE----NLSPPLPVAAPSEG-----VVIRVL-ISGAHASFLHMRVFPSTTAGQVCRKIGEKLRQLPAEQNEYVLIAIYARPARNVSSLSDTGGGSTGPGHRHSA--GVADRGATVGGDEVDNY--SAGYTAGGGRDXXXXXXXXXXXXXXXXXHQ-------------------SSIRHILHTFRSEERLGEVRLGLPEPNSAGRPQNPANSHDRGARGDTDG 355
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1054.507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG66_9PHAE6.940e-2842.21PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCW3_ECTSI3.000e-2541.63PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1054contigD-dichotoma_M_contig1054:211546..213709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D8LCW3
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs28P6I@1,2QVTE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size950
Cds size879
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1054.507.1prot_D-dichotoma_M_contig1054.507.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1054 211615..213709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927547.6672244-UTR-D-dichotoma_M_contig1054:211545..2116141622927547.6672244-UTR-D-dichotoma_M_contig1054:211545..211614Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1054 211546..211614 +
1690798029.5766926-UTR-D-dichotoma_M_contig1054:211545..2116141690798029.5766926-UTR-D-dichotoma_M_contig1054:211545..211614Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1054 211546..211614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927547.6814013-CDS-D-dichotoma_M_contig1054:211614..2119651622927547.6814013-CDS-D-dichotoma_M_contig1054:211614..211965Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 211615..211965 +
1690798029.5929275-CDS-D-dichotoma_M_contig1054:211614..2119651690798029.5929275-CDS-D-dichotoma_M_contig1054:211614..211965Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 211615..211965 +
1622927547.698164-CDS-D-dichotoma_M_contig1054:213016..2133391622927547.698164-CDS-D-dichotoma_M_contig1054:213016..213339Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 213017..213339 +
1690798029.603594-CDS-D-dichotoma_M_contig1054:213016..2133391690798029.603594-CDS-D-dichotoma_M_contig1054:213016..213339Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 213017..213339 +
1622927547.7144186-CDS-D-dichotoma_M_contig1054:213504..2137091622927547.7144186-CDS-D-dichotoma_M_contig1054:213504..213709Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 213505..213709 +
1690798029.6132884-CDS-D-dichotoma_M_contig1054:213504..2137091690798029.6132884-CDS-D-dichotoma_M_contig1054:213504..213709Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 213505..213709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1054.507.1

>prot_D-dichotoma_M_contig1054.507.1 ID=prot_D-dichotoma_M_contig1054.507.1|Name=mRNA_D-dichotoma_M_contig1054.507.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=293bp
MENQELGLDTPETEGDRAGLNSPDLVSVVDGEAGVSAVWDGSGEATAAAS
TGGEEKSGVYAAENRDVDRLSLVPGLTRLRDSSGGGGGGVVIRVVRMSGP
HSSFLHMRVFPTTTAGQVCRKIGEKLRQSPAEQAEHVLIAIYERPVVPGS
GNAAGGVSHADIAEKGRQDEGGGLGGDRARSADPSAGRDRREGRIGRRQQ
HTHDRATAPVGSHSGRRGAEDRRRRRSRSGSGNTSVRHILHTFRPEERLG
AVRLGIHELPLRLPRAAPEQHDELGTGAHDGSAGHGGDGLPNS
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mRNA from alignment at D-dichotoma_M_contig1054:211546..213709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1054.507.1 ID=mRNA_D-dichotoma_M_contig1054.507.1|Name=mRNA_D-dichotoma_M_contig1054.507.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2164bp|location=Sequence derived from alignment at D-dichotoma_M_contig1054:211546..213709+ (Dictyota dichotoma ODC1387m male)
AGGCCTCGAGTGTGAGTTCAGACTCGCACGGCGCCCGGGCGGCCACCGCT
TCCGAGGAAGTCAGTCACCATGGAAAACCAAGAGCTCGGTCTCGACACAC
CGGAGACTGAGGGTGACCGCGCAGGCCTCAACAGCCCGGACCTTGTCTCT
GTGGTGGATGGCGAGGCGGGGGTGTCGGCGGTATGGGATGGGTCTGGCGA
AGCAACGGCGGCGGCGTCAACGGGCGGGGAGGAGAAATCGGGCGTGTACG
CGGCGGAGAACAGGGACGTGGACCGGTTGTCGCTGGTCCCCGGGTTGACG
AGGCTGCGGGATTCTTCCGGCGGCGGCGGCGGAGGTGTCGTGATTCGCGT
CGTGAGGATGTCAGGTCCGCACTCGTCGTTCTTGCATATGCGGGTGTTTC
CTACGACCACGGCCGGGCAGGTGGGAGGTCGAGGAATAAAATGGTCGCGT
ATTACAGGGTTCGAAGTTCCAAAACTTCGAAGCAAGAAGAACGGAAGTCG
TTGCTTGTGGGGTTGGGTTACATGATTTTGCTACAGTAAGGCTAAAGGAA
AAAAGAGTACACCAGGAAAAAAAACAGTCCAAATCTAGCTAGCCCCCCAA
AATTGCTCACGAAGATGGTCGGATATACACTTAGAGAAAACGAAACACAA
AAGTTCAAACCTGGCCCGAAAAAGTTGTGGGCATTTTTTGGGGGGTCAGT
TTTGGACTGTTTTTTCCTCGCGTACTCCGTTACACCCTTGAGTGCTACTA
TAACGATAGTCAGGCTACGTGGCATCCGGATATTACGCAGAAGATCACTG
CGTCGCGGAACGGTCGGGGTTTACGCTGCTAGGTTGCGGTCCTCCACCGG
ATCTCCGGTGACTCCAGTCAATCCATGTTTCTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTCTTTTTCCTTTTTCTTTTTTTCTTTTTTCTT
TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTCTTTTTTCTTTTTGTATGTAATCTTTTCCGA
CGACAGAAGCCGGCCTGATGGTATGGGATTTTCTCATCAAGTTTGAGTTT
TGGAAACGATCCGCACTTTCCTAAATGCTAGATCGGCAGCCTGTTGATCA
TTCCTTGTGTTTCGGTCGTTTTAGCTAGGAACGGGGGACTGTTTCTCAGC
TTTGTTCGTTCCGCTAGAAGTCATCCAGGAGTGGGTTTGATTCTCCTGCC
GTCGAATGTTCGTGCTCCGAACCGTTTCGCTCACAGCTGGTTGGTTCCCC
GCTTCGTGCGTTCCCAGAAGGTTGGACGTGGCGCGACCAAATTCGTGTCC
CCGAGGCAAGGATCCAGGCGGTTTTCGGTTGTCCTTAGCAATCGTAGTAG
TAAACGTGGTGACCGGCTGCGTCCCGTAGGGTGCCCGCTCATCGTGTTGT
GCGGGACACGCGTGTTGACAGGTTTGTCGGAAAATCGGCGAAAAGCTGCG
ACAGAGTCCGGCGGAGCAGGCTGAGCACGTGCTGATCGCGATCTACGAAC
GCCCGGTTGTGCCGGGGTCCGGGAATGCCGCCGGTGGTGTATCTCACGCG
GATATAGCCGAGAAGGGGAGGCAGGACGAAGGCGGTGGGTTGGGCGGGGA
TAGGGCCAGGAGCGCCGACCCTTCTGCAGGGCGTGACAGGAGGGAGGGCA
GAATTGGTCGCCGACAGCAGCACACTCACGACAGGGCCACGGCGCCCGTG
GGCTCACATAGCGGGCGTAGGGGCGCGGAAGATCGACGACGGAGGCAAGT
TCCATATTGCCCGGTTGCTCGCTGTTGTTGATGGAGGGTGTGTGTGCGTG
CATTCGTAGAGGCTTGGTTTTAAGCAGGACCAGGGTGTTCAGGGCTTGCG
CGTGGATTGCGTTGTCGGCGTTTTTCACGCCGCGCTGTGCTTGGGGTTTC
GACGAACAGGCGGAGCAGGAGCGGGAGCGGGAACACGAGCGTGCGGCATA
TCCTCCACACCTTCCGTCCCGAGGAACGCTTGGGCGCCGTCAGGTTAGGT
ATTCATGAGCTTCCCTTGCGCCTTCCTCGTGCTGCTCCGGAGCAGCATGA
CGAGCTTGGTACCGGAGCTCACGATGGTAGTGCGGGACATGGAGGCGACG
GGCTTCCGAATAGT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1054:211546..213709+

>mRNA_D-dichotoma_M_contig1054.507.1 ID=mRNA_D-dichotoma_M_contig1054.507.1|Name=mRNA_D-dichotoma_M_contig1054.507.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1758bp|location=Sequence derived from alignment at D-dichotoma_M_contig1054:211546..213709+ (Dictyota dichotoma ODC1387m male)
ATGGAAAACCAAGAGCTCGGTCTCGACACACCGGAGACTGAGGGTGACCG
CGCAGGCCTCAACAGCCCGGACCTTGTCTCTGTGGTGGATGGCGAGGCGG
GGGTGTCGGCGGTATGGGATGGGTCTGGCGAAGCAACGGCGGCGGCGTCA
ACGGGCGGGGAGGAGAAATCGGGCGTGTACGCGGCGGAGAACAGGGACGT
GGACCGGTTGTCGCTGGTCCCCGGGTTGACGAGGCTGCGGGATTCTTCCG
GCGGCGGCGGCGGAGGTGTCGTGATTCGCGTCGTGAGGATGTCAGGTCCG
CACTCGTCGTTCTTGCATATGCGGGTGTTTCCTACGACCACGGCCGGGCA
GATGGAAAACCAAGAGCTCGGTCTCGACACACCGGAGACTGAGGGTGACC
GCGCAGGCCTCAACAGCCCGGACCTTGTCTCTGTGGTGGATGGCGAGGCG
GGGGTGTCGGCGGTATGGGATGGGTCTGGCGAAGCAACGGCGGCGGCGTC
AACGGGCGGGGAGGAGAAATCGGGCGTGTACGCGGCGGAGAACAGGGACG
TGGACCGGTTGTCGCTGGTCCCCGGGTTGACGAGGCTGCGGGATTCTTCC
GGCGGCGGCGGCGGAGGTGTCGTGATTCGCGTCGTGAGGATGTCAGGTCC
GCACTCGTCGTTCTTGCATATGCGGGTGTTTCCTACGACCACGGCCGGGC
AGGTTTGTCGGAAAATCGGCGAAAAGCTGCGACAGAGTCCGGCGGAGCAG
GCTGAGCACGTGCTGATCGCGATCTACGAACGCCCGGTTGTGCCGGGGTC
CGGGAATGCCGCCGGTGGTGTATCTCACGCGGATATAGCCGAGAAGGGGA
GGCAGGACGAAGGCGGTGGGTTGGGCGGGGATAGGGCCAGGAGCGCCGAC
CCTTCTGCAGGGCGTGACAGGAGGGAGGGCAGAATTGGTCGCCGACAGCA
GCACACTCACGACAGGGCCACGGCGCCCGTGGGCTCACATAGCGGGCGTA
GGGGCGCGGAAGATCGACGACGGAGGTTTGTCGGAAAATCGGCGAAAAGC
TGCGACAGAGTCCGGCGGAGCAGGCTGAGCACGTGCTGATCGCGATCTAC
GAACGCCCGGTTGTGCCGGGGTCCGGGAATGCCGCCGGTGGTGTATCTCA
CGCGGATATAGCCGAGAAGGGGAGGCAGGACGAAGGCGGTGGGTTGGGCG
GGGATAGGGCCAGGAGCGCCGACCCTTCTGCAGGGCGTGACAGGAGGGAG
GGCAGAATTGGTCGCCGACAGCAGCACACTCACGACAGGGCCACGGCGCC
CGTGGGCTCACATAGCGGGCGTAGGGGCGCGGAAGATCGACGACGGAGGC
GGAGCAGGAGCGGGAGCGGGAACACGAGCGTGCGGCATATCCTCCACACC
TTCCGTCCCGAGGAACGCTTGGGCGCCGTCAGGTTAGGTATTCATGAGCT
TCCCTTGCGCCTTCCTCGTGCTGCTCCGGAGCAGCATGACGAGCTTGGTA
CCGGAGCTCACGATGGTAGTGCGGGACATGGAGGCGACGGGCTTCCGAAT
AGTGCGGAGCAGGAGCGGGAGCGGGAACACGAGCGTGCGGCATATCCTCC
ACACCTTCCGTCCCGAGGAACGCTTGGGCGCCGTCAGGTTAGGTATTCAT
GAGCTTCCCTTGCGCCTTCCTCGTGCTGCTCCGGAGCAGCATGACGAGCT
TGGTACCGGAGCTCACGATGGTAGTGCGGGACATGGAGGCGACGGGCTTC
CGAATAGT
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