prot_D-dichotoma_M_contig9.19754.1 (polypeptide) Dictyota dichotoma ODC1387m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-dichotoma_M_contig9.19754.1
Unique Nameprot_D-dichotoma_M_contig9.19754.1
Typepolypeptide
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Sequence length182
Homology
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BLAST of mRNA_D-dichotoma_M_contig9.19754.1 vs. uniprot
Match: D7FKN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN3_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.600e-24
Identity = 69/136 (50.74%), Postives = 77/136 (56.62%), Query Frame = 0 
Query:    1 MSPSGLVVTGLGAVVCACLVSYSDGFFATPAAPISADMLTVRTGAGRRGGG-LYMAKHVQNKATKXXXXXXXXXXXXXXXXRKPVEHPVEVVTNGNFPGAPPVWELVDEGNFPPDTKASVIEKMASEEYDRLQAEK 135
            M+P G VV GL  VVCACL   +D FF   A P S      R GA R G G L MAKH QNK TK                RKP ++ +EV TNGNFPGAPPV+EL  E     DTKASVIE +AS E+D  QA K
Sbjct:    1 MAPVGRVVGGL-VVVCACLAPATDAFFTGVALPSS------RAGAARGGNGALEMAKHRQNKGTKKHVKNRPRKSRLSDRNRKPTDYSIEVNTNGNFPGAPPVFELESEPEEGIDTKASVIEALASAEWDAEQAAK 129
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig9.19754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKN3_ECTSI3.600e-2450.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020526Ribosomal protein L6, chloroplastPFAMPF17257DUF5323coord: 59..108
e-value: 9.7E-7
score: 28.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..181
NoneNo IPR availablePRODOMPD069352coord: 59..84
e-value: 0.006
score: 91.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.562

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig9contigD-dichotoma_M_contig9:1160444..1167060 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig9.19754.1mRNA_D-dichotoma_M_contig9.19754.1Dictyota dichotoma ODC1387m malemRNAD-dichotoma_M_contig9 1160406..1167948 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-dichotoma_M_contig9.19754.1 ID=prot_D-dichotoma_M_contig9.19754.1|Name=mRNA_D-dichotoma_M_contig9.19754.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=182bp
MSPSGLVVTGLGAVVCACLVSYSDGFFATPAAPISADMLTVRTGAGRRGG
GLYMAKHVQNKATKKHVKNRPRKSRLSDRVRKPVEHPVEVVTNGNFPGAP
PVWELVDEGNFPPDTKASVIEKMASEEYDRLQAEKETEFIAFNKAFEEQC
RAAGIELPEETAEEEGEASYMPEFEPATNFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020526Ribosomal_L6_chp