prot_D-dichotoma_M_contig105.482.1 (polypeptide) Dictyota dichotoma ODC1387m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-dichotoma_M_contig105.482.1
Unique Nameprot_D-dichotoma_M_contig105.482.1
Typepolypeptide
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Sequence length286
Homology
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 3.960e-93
Identity = 152/239 (63.60%), Postives = 187/239 (78.24%), Query Frame = 0
Query:   58 GLQPTLLMDLLGQTRLKHGSKKGK-----------GSRGDKGGRDRAEDDGEGTLDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 285
            G Q      L+GQ RLKHG KKG             S  D  G D AE     +LDDIAGIPE+KAR+D+VL+GL   FQGLRGGK DPGMLD+V+V+SYGS + L+SVAQAS+KGPQL++L++YDPG+ KA+E+AVRECGMGLNP  EGQGQV VP+PK TKESR+A+AKVAAKH EK+KVV+RGIRHK+LDQ+KKKKD FPED+VH R+KEID CT++AEA  + +LE+KK+EI+ V
Sbjct:   68 GRQQDGCASLIGQIRLKHGGKKGNXXXXXXXXSAPSSTAD--GEDVAE-----SLDDIAGIPESKARFDKVLQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQVHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEIDKCTKDAEAGIASMLEKKKAEILTV 299          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA)

HSP 1 Score: 186 bits (471), Expect = 2.380e-53
Identity = 105/196 (53.57%), Postives = 128/196 (65.31%), Query Frame = 0
Query:  100 TLDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQG----------QVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 285
            T+DD A +    AR DRVLEGLK +   LRGG+ DP M DH+ V SYG   PLSSVAQ S KGPQL+VLT YDP    AV  AVR+ GM LNP ++G             V VP+PK++ E+R++L KVA K TEKAKV MRGIRHKVL+++KK K  F ED+VHRR KEIDT     EA  +  L+ KK +I+  
Sbjct:  140 TVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA 335          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A7S1U0D6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0D6_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.650e-38
Identity = 84/210 (40.00%), Postives = 125/210 (59.52%), Query Frame = 0
Query:   77 SKKGKGSRGDKGGRDRAEDDG-EGTLDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDL--FPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIM 283
            +KKGKG  G K   D A D+   G L  +    E   +   V + LK  F G+RGG+P+PGM DHV VD+YGS +P+++VAQ +LK P+   +T++DP + + V EA+   GM LNP VEG   + VP+PK+T+E R+ +AK A K  E AK  +R +R   LD+VK  ++L    ED+ HR  + +D  T+        L + K++E++
Sbjct:    8 AKKGKGGGGGK--TDAALDEAISGVLPTVLDFAELSEKASAVEDKLKENFAGIRGGRPEPGMFDHVMVDAYGSPTPMNAVAQVALKTPKAATVTVFDPSVAQNVAEALEGAGMDLNPQVEGN-TITVPIPKLTRELREDMAKAAGKQLETAKQALRRLRKSALDEVKDNEELGELSEDDAHREKELVDALTKRGSERLEALHDAKRAEVL 214          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: K9HKD2_9PROT (Ribosome-recycling factor n=2 Tax=Caenispirillum TaxID=414051 RepID=K9HKD2_9PROT)

HSP 1 Score: 139 bits (350), Expect = 4.990e-37
Identity = 77/177 (43.50%), Postives = 113/177 (63.84%), Query Frame = 0
Query:  111 KARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKK--KKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 285
            K R D+ +E LK EF GLR G+    +LD V V++YGST PL+ VA  S+  P+++V++++D  ++KAVE+A+R  G+GLNP  EGQ  +RVP+P +T+E R  L KVAAK+ E A+V +R +R   +DQ+KK  K     +DE     KE+   T E  +   + L+ K+ EIM V
Sbjct:   16 KHRMDQAVEVLKKEFAGLRTGRAHTSLLDPVVVEAYGSTMPLNQVANVSVPEPRMLVVSVWDRSMIKAVEKAIRNAGLGLNPAAEGQ-TIRVPIPPLTEERRAELTKVAAKYGENARVAVRNVRRDGMDQLKKMEKDGTISQDEQRAHEKEVQQLTDETISTIDETLKHKEQEIMQV 191          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A286H2T3_9PROT (Ribosome-recycling factor n=2 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286H2T3_9PROT)

HSP 1 Score: 139 bits (349), Expect = 7.030e-37
Identity = 76/177 (42.94%), Postives = 114/177 (64.41%), Query Frame = 0
Query:  111 KARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKK--KKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 285
            K R ++ +E LK EF GLR G+    +LD V VD+YGS+ PL+ VA  S+  P+++V++++D  + KAVE+A+R+ G+GLNP  EGQ  +RVP+P +T+E R  L+KVAAK+TE A+V +R +R   +D +KK  K  +  +DE      E+   T EA     + L+ K+ EIM V
Sbjct:   16 KHRMEQTVEVLKKEFAGLRTGRAHTSLLDPVVVDAYGSSMPLNQVANVSVPEPRMLVVSVWDRSMTKAVEKAIRDAGLGLNPAAEGQS-IRVPIPPLTEERRTELSKVAAKYTEAARVAIRNVRRDGMDSLKKMEKDGVISQDEHRTHSTEVQQLTDEAIKTVDETLKHKEQEIMQV 191          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK)

HSP 1 Score: 140 bits (352), Expect = 2.480e-36
Identity = 73/181 (40.33%), Postives = 110/181 (60.77%), Query Frame = 0
Query:  105 AGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 285
            A + +   +  R ++ L  + + LR G+ DP M DH++VD+YG ++PLS+VA  + +GPQL+V+ +YDP L  AV+ A+RECGMGLNP     G + VP+PK +KE R+ LA++A +  EK K  +R  R   +D+ KK     PEDE  R +KEID          S L++ K+ E++  
Sbjct:   95 ADLEQVDQKMGRYIQALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQALEGGALSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKKAG--LPEDESKRLVKEIDALCDAKLKAVSDLIDGKQKELLNA 273          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A4P7WB35_9PROT (Ribosome-recycling factor n=2 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A4P7WB35_9PROT)

HSP 1 Score: 134 bits (338), Expect = 2.810e-35
Identity = 76/189 (40.21%), Postives = 117/189 (61.90%), Query Frame = 0
Query:   99 GTLDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVK--KKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 285
            G  DD+  + E   R D+V   LK EF GLR G+  P +L+ V V++YGS SPL+ VA  ++  P ++ ++++D GL++AVE+A+R  G+GLNP  EGQ  VRVP+P++T E R+ LAK A ++TE A++ +R  R   + + K  +K+    EDE+   +  I   T    +D  +LL +K+SEI  V
Sbjct:    3 GNFDDL--LKEIHERMDKVKVNLKKEFSGLRSGRATPALLEPVRVEAYGSLSPLTQVASIAVPEPSMLSVSVWDKGLVQAVEKAIRNSGLGLNPASEGQ-TVRVPVPQLTGERREELAKAAGRYTENARIAVRNARRDGMTKAKAEEKEGSISEDELKNWIDSIQKLTDSFISDLDELLSKKESEIKQV 188          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A4D9DA72_9STRA (RRF domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA72_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.190e-35
Identity = 76/183 (41.53%), Postives = 116/183 (63.39%), Query Frame = 0
Query:  104 IAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKK-KDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 285
            +  + + +++ +RVL GL+ EF G+RGG+PD GM DH+ V +YG  +PLS VAQ ++K P L V+ +YDP ++  V EAV+   + LNP V+G   V VPLPK + E R    K+ ++ TE A+  +R IR + +D++K + K+   ED+V R  K I++ T+E      + LE+KK EIM V
Sbjct:   80 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLYVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGN-VVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 261          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: K8YZB1_NANGC (Ribosome recycling factor n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YZB1_NANGC)

HSP 1 Score: 136 bits (343), Expect = 7.940e-35
Identity = 76/183 (41.53%), Postives = 116/183 (63.39%), Query Frame = 0
Query:  104 IAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKK-KDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 285
            +  + + +++ +RVL GL+ EF G+RGG+PD GM DH+ V +YG  +PLS VAQ ++K P L V+ +YDP ++  V EAV+   + LNP V+G   V VPLPK + E R    K+ ++ TE A+  +R IR + +D++K + K+   ED+V R  K I++ T+E      + LE+KK EIM V
Sbjct:  112 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGN-VVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293          
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A437MJH9_9PROT (Ribosome-recycling factor n=2 Tax=Rhodovarius TaxID=268408 RepID=A0A437MJH9_9PROT)

HSP 1 Score: 132 bits (331), Expect = 3.270e-34
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = 0
Query:  111 KARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVK--KKKDLFPEDEVHRRLKEIDTCTQE 266
            + R D  +E LK EFQGLR G+  P +L+ + V+ YG+ SPL+ VA  S+ GP L+ + +YD G +KAVE A+R+ G+ LNP  EGQ  +RVPLP +T E R+ L+K AAK+ E AK+ +R +R   ++Q +  KKK    ED+  R  KE+ T T +
Sbjct:   15 RRRMDSTMETLKKEFQGLRTGRASPALLEPIRVEIYGAVSPLNQVANVSVGGPGLLNVQVYDRGQVKAVEIAIRDSGLNLNPQTEGQ-TIRVPLPPLTTERRNELSKQAAKYAEGAKIAVRNVRRDGMEQAQGWKKKSEISEDDAKRLEKEVQTLTDD 171          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z6_9PHAE3.960e-9363.60RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CM55_9STRA2.380e-5353.57Ribosome recycling factor domain-containing protei... [more]
A0A7S1U0D6_9STRA1.650e-3840.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K9HKD2_9PROT4.990e-3743.50Ribosome-recycling factor n=2 Tax=Caenispirillum T... [more]
A0A286H2T3_9PROT7.030e-3742.94Ribosome-recycling factor n=2 Tax=Caenispirillum b... [more]
A0A6V1LRG3_HETAK2.480e-3640.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4P7WB35_9PROT2.810e-3540.21Ribosome-recycling factor n=2 Tax=Acetobacteraceae... [more]
A0A4D9DA72_9STRA7.190e-3541.53RRF domain-containing protein n=1 Tax=Nannochlorop... [more]
K8YZB1_NANGC7.940e-3541.53Ribosome recycling factor n=2 Tax=Nannochloropsis ... [more]
A0A437MJH9_9PROT3.270e-3444.94Ribosome-recycling factor n=2 Tax=Rhodovarius TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.132.20coord: 112..282
e-value: 8.4E-48
score: 164.1
NoneNo IPR availableGENE3D3.30.1360.40coord: 132..207
e-value: 8.4E-48
score: 164.1
NoneNo IPR availablePANTHERPTHR20982:SF3MITOCHONDRIAL RIBOSOME RECYCLING FACTORcoord: 76..283
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 121..283
e-value: 7.6E-44
score: 149.5
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 76..283
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 109..283

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig105contigD-dichotoma_M_contig105:113523..117214 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig105.482.1mRNA_D-dichotoma_M_contig105.482.1Dictyota dichotoma ODC1387m malemRNAD-dichotoma_M_contig105 113383..117658 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-dichotoma_M_contig105.482.1 ID=prot_D-dichotoma_M_contig105.482.1|Name=mRNA_D-dichotoma_M_contig105.482.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=286bp
MIARLSCRQLLRRTTEHSPVLALARRCLWIGEENLRCSPRERLAGATTLA
CLPWTHAGLQPTLLMDLLGQTRLKHGSKKGKGSRGDKGGRDRAEDDGEGT
LDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTS
PLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQV
RVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDLFPE
DEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac
IPR036191RRF_sf