mRNA_D-dichotoma_M_contig981.20470.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig981.20470.1
Unique NamemRNA_D-dichotoma_M_contig981.20470.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig981.20470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig981contigD-dichotoma_M_contig981:4665..5142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.7793882-CDS-D-dichotoma_M_contig981:4664..47641622931250.7793882-CDS-D-dichotoma_M_contig981:4664..4764Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig981 4665..4764 -
1690799687.2254624-CDS-D-dichotoma_M_contig981:4664..47641690799687.2254624-CDS-D-dichotoma_M_contig981:4664..4764Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig981 4665..4764 -
1622931250.8055284-CDS-D-dichotoma_M_contig981:5080..51421622931250.8055284-CDS-D-dichotoma_M_contig981:5080..5142Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig981 5081..5142 -
1690799687.2375226-CDS-D-dichotoma_M_contig981:5080..51421690799687.2375226-CDS-D-dichotoma_M_contig981:5080..5142Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig981 5081..5142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig981.20470.1prot_D-dichotoma_M_contig981.20470.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig981 4665..5142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig981.20470.1

>prot_D-dichotoma_M_contig981.20470.1 ID=prot_D-dichotoma_M_contig981.20470.1|Name=mRNA_D-dichotoma_M_contig981.20470.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=54bp
HLHLPTGNRLVSQIELRDTRSPSLPTQPAAERLSPTAGTIASHPDLLGLH
PSTT
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mRNA from alignment at D-dichotoma_M_contig981:4665..5142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig981.20470.1 ID=mRNA_D-dichotoma_M_contig981.20470.1|Name=mRNA_D-dichotoma_M_contig981.20470.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=478bp|location=Sequence derived from alignment at D-dichotoma_M_contig981:4665..5142- (Dictyota dichotoma ODC1387m male)
CATCTACACCTACCAACTGGGAATCGGCTAGTGAGCCAGATTGAACTACG
CGACACACGCAGGTCACGTTCTGACCCTTCCACCGGGTTGATCTGTGTCC
TTGCTCCTACAAAAATCATAACAATTTGGCGTCGACCAAGACTCTGGTTC
CCTTTGTCCGTATCCCTTCTCCCTACACCATGCAATCTCCCACCTCTCCA
CCCACCGCTCGCGACATGCGAGCCTTACAGCGTGACGAGCTCCGTACCTC
AATGTTGACCCAAATCCCGATCAACAGCACACTCCGTGCACATGCAACCG
CCGCCCCTACCGCTGACCCTGTTCACGACTTTGACCACCCCACGGATGCT
CCCTTCCCACGACCCTGCCTCACGCAAGCCCCAGCCTACCCACGCAACCC
GCTGCAGAACGGCTTTCTCCCACCGCTGGTACCATCGCCTCACACCCGGA
CCTCCTTGGTCTACACCCTTCGACAACG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig981:4665..5142-

>mRNA_D-dichotoma_M_contig981.20470.1 ID=mRNA_D-dichotoma_M_contig981.20470.1|Name=mRNA_D-dichotoma_M_contig981.20470.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=324bp|location=Sequence derived from alignment at D-dichotoma_M_contig981:4665..5142- (Dictyota dichotoma ODC1387m male)
CATCTACACCTACCAACTGGGAATCGGCTAGTGAGCCAGATTGAACTACG
CGACACACGCAGCATCTACACCTACCAACTGGGAATCGGCTAGTGAGCCA
GATTGAACTACGCGACACACGCAGCCCCAGCCTACCCACGCAACCCGCTG
CAGAACGGCTTTCTCCCACCGCTGGTACCATCGCCTCACACCCGGACCTC
CTTGGTCTACACCCTTCGACAACGCCCCAGCCTACCCACGCAACCCGCTG
CAGAACGGCTTTCTCCCACCGCTGGTACCATCGCCTCACACCCGGACCTC
CTTGGTCTACACCCTTCGACAACG
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