mRNA_D-dichotoma_M_contig980.20468.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig980.20468.1
Unique NamemRNA_D-dichotoma_M_contig980.20468.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig980.20468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig980contigD-dichotoma_M_contig980:115407..115732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size326
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig980.20468.1prot_D-dichotoma_M_contig980.20468.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig980 115409..115717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.4077952-UTR-D-dichotoma_M_contig980:115406..1154081622931250.4077952-UTR-D-dichotoma_M_contig980:115406..115408Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig980 115407..115408 +
1690799687.0637898-UTR-D-dichotoma_M_contig980:115406..1154081690799687.0637898-UTR-D-dichotoma_M_contig980:115406..115408Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig980 115407..115408 +
1622931250.4414473-UTR-D-dichotoma_M_contig980:115717..1157321622931250.4414473-UTR-D-dichotoma_M_contig980:115717..115732Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig980 115718..115732 +
1690799687.0868719-UTR-D-dichotoma_M_contig980:115717..1157321690799687.0868719-UTR-D-dichotoma_M_contig980:115717..115732Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig980 115718..115732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.4265485-CDS-D-dichotoma_M_contig980:115408..1157171622931250.4265485-CDS-D-dichotoma_M_contig980:115408..115717Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig980 115409..115717 +
1690799687.0749402-CDS-D-dichotoma_M_contig980:115408..1157171690799687.0749402-CDS-D-dichotoma_M_contig980:115408..115717Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig980 115409..115717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig980.20468.1

>prot_D-dichotoma_M_contig980.20468.1 ID=prot_D-dichotoma_M_contig980.20468.1|Name=mRNA_D-dichotoma_M_contig980.20468.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=103bp
MPAPSSNDPPFSLLPGILAAASVLLLGVLAAVGPLPRIEGIPRRFLEARV
VFLGWSTSTLRPFLLIYWCRFWLMETEVAINLRGVGLTSFVIPSLPVLAC
LF*
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mRNA from alignment at D-dichotoma_M_contig980:115407..115732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig980.20468.1 ID=mRNA_D-dichotoma_M_contig980.20468.1|Name=mRNA_D-dichotoma_M_contig980.20468.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=326bp|location=Sequence derived from alignment at D-dichotoma_M_contig980:115407..115732+ (Dictyota dichotoma ODC1387m male)
GCATGCCTGCTCCATCTTCGAACGATCCTCCTTTCTCTCTTCTGCCAGGG
ATTCTCGCTGCTGCTTCTGTTCTTCTGCTAGGAGTTCTAGCCGCTGTTGG
ACCGCTGCCTCGAATCGAAGGAATCCCCCGTCGTTTTCTTGAGGCGCGGG
TGGTGTTCCTGGGTTGGTCGACTTCGACTCTTCGGCCATTTCTCCTGATC
TATTGGTGTCGATTCTGGCTGATGGAGACTGAAGTCGCAATCAACTTGCG
AGGAGTAGGCCTTACTTCGTTCGTGATACCAAGCCTTCCTGTACTCGCGT
GTCTATTCTGAACGCTGAAAGGATAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig980:115407..115732+

>mRNA_D-dichotoma_M_contig980.20468.1 ID=mRNA_D-dichotoma_M_contig980.20468.1|Name=mRNA_D-dichotoma_M_contig980.20468.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=618bp|location=Sequence derived from alignment at D-dichotoma_M_contig980:115407..115732+ (Dictyota dichotoma ODC1387m male)
ATGCCTGCTCCATCTTCGAACGATCCTCCTTTCTCTCTTCTGCCAGGGAT
TCTCGCTGCTGCTTCTGTTCTTCTGCTAGGAGTTCTAGCCGCTGTTGGAC
CGCTGCCTCGAATCGAAGGAATCCCCCGTCGTTTTCTTGAGGCGCGGGTG
GTGTTCCTGGGTTGGTCGACTTCGACTCTTCGGCCATTTCTCCTGATCTA
TTGGTGTCGATTCTGGCTGATGGAGACTGAAGTCGCAATCAACTTGCGAG
GAGTAGGCCTTACTTCGTTCGTGATACCAAGCCTTCCTGTACTCGCGTGT
CTATTCTGAATGCCTGCTCCATCTTCGAACGATCCTCCTTTCTCTCTTCT
GCCAGGGATTCTCGCTGCTGCTTCTGTTCTTCTGCTAGGAGTTCTAGCCG
CTGTTGGACCGCTGCCTCGAATCGAAGGAATCCCCCGTCGTTTTCTTGAG
GCGCGGGTGGTGTTCCTGGGTTGGTCGACTTCGACTCTTCGGCCATTTCT
CCTGATCTATTGGTGTCGATTCTGGCTGATGGAGACTGAAGTCGCAATCA
ACTTGCGAGGAGTAGGCCTTACTTCGTTCGTGATACCAAGCCTTCCTGTA
CTCGCGTGTCTATTCTGA
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