mRNA_D-dichotoma_M_contig980.20467.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig980.20467.1
Unique NamemRNA_D-dichotoma_M_contig980.20467.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig980.20467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig980contigD-dichotoma_M_contig980:112094..112428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size179
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.248769-CDS-D-dichotoma_M_contig980:112095..1121801622931250.248769-CDS-D-dichotoma_M_contig980:112095..112180Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig980 112096..112180 -
1690799686.9776664-CDS-D-dichotoma_M_contig980:112095..1121801690799686.9776664-CDS-D-dichotoma_M_contig980:112095..112180Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig980 112096..112180 -
1622931250.2659328-CDS-D-dichotoma_M_contig980:112336..1124281622931250.2659328-CDS-D-dichotoma_M_contig980:112336..112428Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig980 112337..112428 -
1690799686.9940434-CDS-D-dichotoma_M_contig980:112336..1124281690799686.9940434-CDS-D-dichotoma_M_contig980:112336..112428Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig980 112337..112428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig980.20467.1prot_D-dichotoma_M_contig980.20467.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig980 112096..112428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig980.20467.1

>prot_D-dichotoma_M_contig980.20467.1 ID=prot_D-dichotoma_M_contig980.20467.1|Name=mRNA_D-dichotoma_M_contig980.20467.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=59bp
DSLPVEDVQLERDDRGTGVVDRHRQPHDRLEAAGLQAPQENLQSAVWESR
PDAHMRLHL
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mRNA from alignment at D-dichotoma_M_contig980:112094..112428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig980.20467.1 ID=mRNA_D-dichotoma_M_contig980.20467.1|Name=mRNA_D-dichotoma_M_contig980.20467.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=335bp|location=Sequence derived from alignment at D-dichotoma_M_contig980:112094..112428- (Dictyota dichotoma ODC1387m male)
GATTCTCTCCCCGTCGAAGATGTCCAACTGGAGCGCGACGATAGAGGTAC
TGGGGTGGTGGATCGACACCGTCAACCTCACGATAGGCTTGAGTCAGAAA
AACGGACGAAACTGATCCGACTGATCAGCGACTGGCCGGCATCAAGGCAG
CAGGCATCGATTCGGGAGATACAGAGACTGACGGGGCTACTGCTACACGT
CTCCTTCGTAATCCGGCCGGGTCGGTTCTTCGTGCGTCGCCTGTGGAGGG
CCGCGGGTCTGCAGGCACCGCAAGAGAACCTACAGTCGGCAGTATGGGAA
TCCCGTCCAGACGCCCACATGCGACTACACCTAGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig980:112094..112428-

>mRNA_D-dichotoma_M_contig980.20467.1 ID=mRNA_D-dichotoma_M_contig980.20467.1|Name=mRNA_D-dichotoma_M_contig980.20467.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=354bp|location=Sequence derived from alignment at D-dichotoma_M_contig980:112094..112428- (Dictyota dichotoma ODC1387m male)
GATTCTCTCCCCGTCGAAGATGTCCAACTGGAGCGCGACGATAGAGGTAC
TGGGGTGGTGGATCGACACCGTCAACCTCACGATAGGCTTGAGATTCTCT
CCCCGTCGAAGATGTCCAACTGGAGCGCGACGATAGAGGTACTGGGGTGG
TGGATCGACACCGTCAACCTCACGATAGGCTTGAGGCCGCGGGTCTGCAG
GCACCGCAAGAGAACCTACAGTCGGCAGTATGGGAATCCCGTCCAGACGC
CCACATGCGACTACACCTAGGCCGCGGGTCTGCAGGCACCGCAAGAGAAC
CTACAGTCGGCAGTATGGGAATCCCGTCCAGACGCCCACATGCGACTACA
CCTA
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