mRNA_D-dichotoma_M_contig980.20465.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig980.20465.1
Unique NamemRNA_D-dichotoma_M_contig980.20465.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig980.20465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig980contigD-dichotoma_M_contig980:39403..40137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size737
Cds size291
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.494754-UTR-D-dichotoma_M_contig980:39402..398461622931250.494754-UTR-D-dichotoma_M_contig980:39402..39846Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig980 39403..39846 +
1690799687.098227-UTR-D-dichotoma_M_contig980:39402..398461690799687.098227-UTR-D-dichotoma_M_contig980:39402..39846Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig980 39403..39846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.5153735-CDS-D-dichotoma_M_contig980:39846..401371622931250.5153735-CDS-D-dichotoma_M_contig980:39846..40137Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig980 39847..40137 +
1690799687.1067114-CDS-D-dichotoma_M_contig980:39846..401371690799687.1067114-CDS-D-dichotoma_M_contig980:39846..40137Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig980 39847..40137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig980.20465.1prot_D-dichotoma_M_contig980.20465.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig980 39847..40137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig980.20465.1

>prot_D-dichotoma_M_contig980.20465.1 ID=prot_D-dichotoma_M_contig980.20465.1|Name=mRNA_D-dichotoma_M_contig980.20465.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=97bp
MVLGYNKVLWEVHTSRKGRVRKGECFLRHLLVNPPRRTLSDGVNGKLLRM
LHSVSLDMLSGESSHATEEEVQERLIAFALLAGNDYASFLGVGPATA
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mRNA from alignment at D-dichotoma_M_contig980:39403..40137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig980.20465.1 ID=mRNA_D-dichotoma_M_contig980.20465.1|Name=mRNA_D-dichotoma_M_contig980.20465.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=735bp|location=Sequence derived from alignment at D-dichotoma_M_contig980:39403..40137+ (Dictyota dichotoma ODC1387m male)
TAAACATGCACAAACTTGTGTCGCGGAAGAGATTATATTGAGAAGGACGG
TTCGTCCGCTCGTGGAAGCTATCGCTGTTGAAGTACGTTCCTTTCAGCTC
CCCGGGTGGGACGTCACCGTTGTTTTCGACCGTGCTACTCCGTCAGCTAA
GGCAGAAACAGGCCGCATCCGGCAACAGAGGCGTGAAGATGCGACGAGAG
AACTCTGTTGATCCCGAGATGCGCATACGGAAGCAGGAGGGCTTGGAAGT
CCCGAGACCGGACACGCTGGGCGGTGTGCACGCTTGTCGCCGGAACTCAT
TTCGCGTGTGATGACTGGAATCGAGGATGAGATGACATGTACCATATATA
CAGCTCTGTTTGAGGCCGATAGTCAACTGAGAGTCCCGGAGAGGATGTTC
GAACAACAATCTATATCGAGAAGTACGCAACGGATTCTGATCTGATGGTT
CTAGGCTACAATAAGGTGCTATGGGAAGTTCATACCTCCAGGAAGGGTAG
AGTACGTAAAGGAGAATGTTTTCTTCGCCATCTGCTCGTTAATCCTCCCC
GTCGAACGTTAAGCGACGGGGTAAACGGGAAACTTCTTCGGATGTTGCAT
TCAGTGTCTCTTGATATGTTGAGCGGCGAATCATCACATGCGACCGAGGA
AGAAGTGCAGGAAAGGCTGATCGCTTTCGCTTTGCTAGCTGGAAACGACT
ACGCCTCGTTTCTAGGTGTTGGACCTGCAACGGCG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig980:39403..40137+

>mRNA_D-dichotoma_M_contig980.20465.1 ID=mRNA_D-dichotoma_M_contig980.20465.1|Name=mRNA_D-dichotoma_M_contig980.20465.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=582bp|location=Sequence derived from alignment at D-dichotoma_M_contig980:39403..40137+ (Dictyota dichotoma ODC1387m male)
ATGGTTCTAGGCTACAATAAGGTGCTATGGGAAGTTCATACCTCCAGGAA
GGGTAGAGTACGTAAAGGAGAATGTTTTCTTCGCCATCTGCTCGTTAATC
CTCCCCGTCGAACGTTAAGCGACGGGGTAAACGGGAAACTTCTTCGGATG
TTGCATTCAGTGTCTCTTGATATGTTGAGCGGCGAATCATCACATGCGAC
CGAGGAAGAAGTGCAGGAAAGGCTGATCGCTTTCGCTTTGCTAGCTGGAA
ACGACTACGCCTCGTTTCTAGGTGTTGGACCTGCAACGGCGATGGTTCTA
GGCTACAATAAGGTGCTATGGGAAGTTCATACCTCCAGGAAGGGTAGAGT
ACGTAAAGGAGAATGTTTTCTTCGCCATCTGCTCGTTAATCCTCCCCGTC
GAACGTTAAGCGACGGGGTAAACGGGAAACTTCTTCGGATGTTGCATTCA
GTGTCTCTTGATATGTTGAGCGGCGAATCATCACATGCGACCGAGGAAGA
AGTGCAGGAAAGGCTGATCGCTTTCGCTTTGCTAGCTGGAAACGACTACG
CCTCGTTTCTAGGTGTTGGACCTGCAACGGCG
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