mRNA_D-dichotoma_M_contig969.20379.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig969.20379.1
Unique NamemRNA_D-dichotoma_M_contig969.20379.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 98.6 bits (244), Expect = 4.810e-24
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDW 321
            +P++   A TSP+ + W  AM  E + L  N+T++    P GRK +  KW++  K N  G+V R KARLVARG+ Q EG+DY +TFSP   + SIR ++  ++++DW
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDW 136          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.890e-24
Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    4 PQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327
            P++Y  A   P+  IW +A R+EF GL    TFE      G   I+AKW+YSWK +  G   R KARLVARGF QREG+D+ +TFSP P  +SIR++   A   DW L
Sbjct: 1251 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEER----GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDL 1354          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.290e-23
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    4 PQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDW 321
            P++Y  A   P+  IW +A R+EF GL    TFE      G   I+AKW+YSWK +  G   R KARLVARGF QREG+D+ +TFSP P  +SIR++   A   DW
Sbjct: 1369 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDW 1471          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6V7QA77_ANACO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7QA77_ANACO)

HSP 1 Score: 96.3 bits (238), Expect = 1.340e-23
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327
            EP +Y  A        W +AM+ E Q L +N+T+    LP G KPI  KW++  K N  G V R KARL+A+GF QREG+DY +TF+P    +++R ++  A  R+W L
Sbjct:    3 EPDTYEQASQDSK---WVEAMQAELQALEENNTWTMVPLPPGHKPIGCKWVFKIKYNSNGTVERYKARLIAKGFTQREGIDYTETFTPVAKLTTVRCLLAVAAVRNWRL 108          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A5N6PD02_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PD02_9ASTR)

HSP 1 Score: 102 bits (254), Expect = 4.350e-23
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327
            EP+S+R A    N   W DAM+RE + L +N+T+    LP G+  I +KW+Y  K    GE+ R KARLVARGF Q EG+DY DTF+P     +IR ++T A++R+W L
Sbjct:  450 EPKSFREAMQDKN---WRDAMQREIKALEENETWTLETLPKGKHAIDSKWVYKIKYKPNGEIERYKARLVARGFTQIEGVDYHDTFAPVAKLVTIRTLITVAVKRNWLL 555          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.290e-23
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    4 PQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327
            P++Y  A   P+  IW +A R+EF GL    TFE      G   I+AKW+YSWK +  G   R KARLVARGF QRE +D+++TFSP P  +SIR++   A   DW L
Sbjct: 1483 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREVVDFVETFSPCPSITSIRLLAAIACVLDWDL 1587          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6H5JTA3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.080e-22
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAA-LPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRD 318
            EP SYR A  S +  IW   M  EF+GL+    F  A   P+G   I A+W+Y W A+  G++ + KARLVA GF Q+ G+DYL+TFSPT  ++SIR+++  A + D
Sbjct:  195 EPGSYREARQSKHTVIWDKGMSAEFEGLLRAGMFALAVKAPIGCNVIDARWVYKWSADKTGKIVKAKARLVAEGFKQKYGVDYLETFSPTANAASIRLLIALACKYD 301          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A151THY7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151THY7_CAJCA)

HSP 1 Score: 95.5 bits (236), Expect = 2.310e-22
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327
            EP + R A  SP    W  AM  E   L+ N T++   LP  RKP+ +KWI+  K N  G +++ KAR+VARG+ Q+ GLDY +TFSP     +IR+I++ AL + W++
Sbjct:   20 EPTTVREAFQSPQ---WVQAMHEELNALVKNQTWDLVPLPPHRKPVGSKWIFRLKHNPDGSISKYKARVVARGYTQQHGLDYQETFSPVVKHVTIRVILSIALSKGWSI 125          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A5N5I1R6_9ROSA (DNA polymerase zeta catalytic subunit-like n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5I1R6_9ROSA)

HSP 1 Score: 100 bits (248), Expect = 2.800e-22
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSA 306
            EPQ+Y+ A +SP    W +A+  E + ++ N T+E   LP G KP+  KWI+  K    G + + KAR+VA+G+ QREGLDY DT+SP    +SIRM++  A
Sbjct:  361 EPQTYKEAISSPEASFWKEAINVEIESIMQNHTWELVDLPPGNKPLGYKWIFKRKMKADGSIDKYKARIVAKGYKQREGLDYFDTYSPVTRITSIRMLIVIA 462          
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: UPI000905BFBB (uncharacterized protein LOC109210846 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905BFBB)

HSP 1 Score: 100 bits (248), Expect = 2.860e-22
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327
            EP SY  AC++P    W  AM  E Q L +N T++   LP G+K +  KW+Y  K +  G + R KARLV RG +QREG+DY +TFSP    ++IR +++ A+++ WT+
Sbjct:  856 EPTSYNQACSNPG---WVQAMDSELQALEENHTWDVVLLPSGKKTLPCKWVYKVKHHADGSIERLKARLVIRGDVQREGIDYTETFSPVVKMTTIRCLLSIAVKKGWTI 961          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015A81C6A4.810e-2442.06uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A6H5KBJ6_9PHAE6.890e-2448.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE1.290e-2348.11Integrase catalytic domain-containing protein n=2 ... [more]
A0A6V7QA77_ANACO1.340e-2342.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PD02_9ASTR4.350e-2346.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVD9_9PHAE8.290e-2347.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTA3_9PHAE2.080e-2244.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151THY7_CAJCA2.310e-2242.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N5I1R6_9ROSA2.800e-2244.12DNA polymerase zeta catalytic subunit-like n=1 Tax... [more]
UPI000905BFBB2.860e-2243.12uncharacterized protein LOC109210846 n=1 Tax=Nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig969contigD-dichotoma_M_contig969:256466..256792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.1
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog71139.XP_010066627.1
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931231.9594605-CDS-D-dichotoma_M_contig969:256465..2567921622931231.9594605-CDS-D-dichotoma_M_contig969:256465..256792Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig969 256466..256792 -
1690799677.6978796-CDS-D-dichotoma_M_contig969:256465..2567921690799677.6978796-CDS-D-dichotoma_M_contig969:256465..256792Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig969 256466..256792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig969.20379.1prot_D-dichotoma_M_contig969.20379.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig969 256466..256792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig969.20379.1

>prot_D-dichotoma_M_contig969.20379.1 ID=prot_D-dichotoma_M_contig969.20379.1|Name=mRNA_D-dichotoma_M_contig969.20379.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=109bp
EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKW
IYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVT
SALQRDWTL
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mRNA from alignment at D-dichotoma_M_contig969:256466..256792-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig969.20379.1 ID=mRNA_D-dichotoma_M_contig969.20379.1|Name=mRNA_D-dichotoma_M_contig969.20379.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=327bp|location=Sequence derived from alignment at D-dichotoma_M_contig969:256466..256792- (Dictyota dichotoma ODC1387m male)
GAGCCCCAGTCTTACAGGGTCGCGTGCACCTCCCCCAACAAGGACATATG GGCGGATGCGATGCGACGCGAGTTTCAGGGGCTCATCGACAACGATACCT TCGAAACCGCCGCTCTTCCGGTCGGACGTAAGCCCATTACAGCGAAATGG ATCTACTCATGGAAGGCCAATCATCTCGGTGAAGTTACCCGAGGGAAGGC ACGCCTGGTGGCCCGCGGGTTCATGCAACGAGAAGGCCTAGACTATCTGG ATACCTTCAGCCCAACACCGGTATCATCCTCCATCCGAATGATTGTGACC TCCGCCTTGCAGCGTGATTGGACTCTC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig969:256466..256792-

>mRNA_D-dichotoma_M_contig969.20379.1 ID=mRNA_D-dichotoma_M_contig969.20379.1|Name=mRNA_D-dichotoma_M_contig969.20379.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=654bp|location=Sequence derived from alignment at D-dichotoma_M_contig969:256466..256792- (Dictyota dichotoma ODC1387m male)
GAGCCCCAGTCTTACAGGGTCGCGTGCACCTCCCCCAACAAGGACATATG
GGCGGATGCGATGCGACGCGAGTTTCAGGGGCTCATCGACAACGATACCT
TCGAAACCGCCGCTCTTCCGGTCGGACGTAAGCCCATTACAGCGAAATGG
ATCTACTCATGGAAGGCCAATCATCTCGGTGAAGTTACCCGAGGGAAGGC
ACGCCTGGTGGCCCGCGGGTTCATGCAACGAGAAGGCCTAGACTATCTGG
ATACCTTCAGCCCAACACCGGTATCATCCTCCATCCGAATGATTGTGACC
TCCGCCTTGCAGCGTGATTGGACTCTCGAGCCCCAGTCTTACAGGGTCGC
GTGCACCTCCCCCAACAAGGACATATGGGCGGATGCGATGCGACGCGAGT
TTCAGGGGCTCATCGACAACGATACCTTCGAAACCGCCGCTCTTCCGGTC
GGACGTAAGCCCATTACAGCGAAATGGATCTACTCATGGAAGGCCAATCA
TCTCGGTGAAGTTACCCGAGGGAAGGCACGCCTGGTGGCCCGCGGGTTCA
TGCAACGAGAAGGCCTAGACTATCTGGATACCTTCAGCCCAACACCGGTA
TCATCCTCCATCCGAATGATTGTGACCTCCGCCTTGCAGCGTGATTGGAC
TCTC
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