mRNA_D-dichotoma_M_contig952.20238.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig952.20238.1
Unique NamemRNA_D-dichotoma_M_contig952.20238.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig952.20238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig952contigD-dichotoma_M_contig952:55054..56190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size1139
Cds size606
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931205.0011163-UTR-D-dichotoma_M_contig952:55053..555841622931205.0011163-UTR-D-dichotoma_M_contig952:55053..55584Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig952 55054..55584 +
1690799664.0761344-UTR-D-dichotoma_M_contig952:55053..555841690799664.0761344-UTR-D-dichotoma_M_contig952:55053..55584Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig952 55054..55584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931205.0169349-CDS-D-dichotoma_M_contig952:55584..561901622931205.0169349-CDS-D-dichotoma_M_contig952:55584..56190Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 55585..56190 +
1690799664.0860765-CDS-D-dichotoma_M_contig952:55584..561901690799664.0860765-CDS-D-dichotoma_M_contig952:55584..56190Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 55585..56190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig952.20238.1prot_D-dichotoma_M_contig952.20238.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig952 55585..56190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig952.20238.1

>prot_D-dichotoma_M_contig952.20238.1 ID=prot_D-dichotoma_M_contig952.20238.1|Name=mRNA_D-dichotoma_M_contig952.20238.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=202bp
MTQRAPGLLLDNRSIDLRFLRVLLPLLLCRRNLLHASRSLLRLSLLAFLE
ARSVGDGTVITITITITITIGLVFLSNTRGNARITTFSLTLHVVLDLRPF
FLLFLLFLLDLFCLRFVLFVCSCLRLQLARVLLFTFCRIGNVRSLYREYF
TSTSITTPICFLICSLLFLLRLFPLLYSVILSFNSHGRSILFSLLRRLLL
PL
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mRNA from alignment at D-dichotoma_M_contig952:55054..56190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig952.20238.1 ID=mRNA_D-dichotoma_M_contig952.20238.1|Name=mRNA_D-dichotoma_M_contig952.20238.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at D-dichotoma_M_contig952:55054..56190+ (Dictyota dichotoma ODC1387m male)
TCAGGAAGAACTCTTTTTCTTTAGCTAGGATCACGGCACTTCCACTGCGT
GCCTCGGTCAAGATGGAATCTCTTGCCTTCATCTACGTGAGCTACGCTGC
CAGGGGCATAGAACGACGGCAAGCGTCATCCGCCACATCACTCACTCCCT
TCCCAGCACCTTCCCAGCACCATTGAAACCCCCGATCCCTGACCGCAGGC
GACAAGAAGAGTTGCAACAGTGCACCAACATCGTCTGGAGAAAATGTGAT
GTGCCCATTTCGAAACAGCCAAGAGCTTACATGCCCCGACACCGAGGACA
TAACCTGAGCAAGCTCTTCCGGTGGTCGACAACAAAGTTTGTCTGAGGGT
GAAGAGCACTTCGGAGACCGCTTACATCACAAAAATATTACCAGTATCTG
GTTCTCGTTTCGCGCTGGTCCAATTCGGATGTTATGAGTCTCCCAGGACG
AAGCCACCTTCGCTTGCGCCATCTGGTTACAGACTCTGGTGCACGCTGGA
CACCCGGCCTCTGATTTCCCCCCCAGGAGACATGACTCAACGAGCCCCGG
GGTTGCTACTTGACAACCGCTCGATTGATCTTCGATTTCTTCGCGTTCTT
CTCCCTCTTCTCCTTTGTCGACGGAACCTTCTCCATGCCTCCCGGAGTCT
TCTTCGCCTTTCGCTTCTTGCCTTCCTTGAGGCCCGATCCGTTGGCGACG
GGACGGTCATCACCATCACCATCACCATCACCATCACCATCGGCCTTGTG
TTTCTTTCTAACACTCGCGGTAACGCCCGTATCACCACCTTCAGTCTTAC
CCTGCATGTCGTCCTCGACCTTCGCCCTTTCTTTCTGCTTTTTCTTCTTT
TTCTTCTTGACCTTTTTTGCCTTCGCTTCGTCCTCTTCGTCTGCTCCTGC
CTCAGGCTGCAGCTGGCCCGCGTGCTCTTGTTCACGTTCTGCCGCATCGG
AAACGTTCGCAGCCTCTACCGCGAGTACTTCACCTCTACGAGTATCACTA
CACCCATCTGTTTTCTTATCTGCTCGCTTCTTTTTCTTCTTCGTCTTTTC
CCCTTGCTTTACTCCGTCATCCTCAGTTTCAACAGCCACGGGCGTTCCAT
CCTTTTTTCTCTTCTTCGACGACTGCTTCTCCCCCTC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig952:55054..56190+

>mRNA_D-dichotoma_M_contig952.20238.1 ID=mRNA_D-dichotoma_M_contig952.20238.1|Name=mRNA_D-dichotoma_M_contig952.20238.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1212bp|location=Sequence derived from alignment at D-dichotoma_M_contig952:55054..56190+ (Dictyota dichotoma ODC1387m male)
ATGACTCAACGAGCCCCGGGGTTGCTACTTGACAACCGCTCGATTGATCT
TCGATTTCTTCGCGTTCTTCTCCCTCTTCTCCTTTGTCGACGGAACCTTC
TCCATGCCTCCCGGAGTCTTCTTCGCCTTTCGCTTCTTGCCTTCCTTGAG
GCCCGATCCGTTGGCGACGGGACGGTCATCACCATCACCATCACCATCAC
CATCACCATCGGCCTTGTGTTTCTTTCTAACACTCGCGGTAACGCCCGTA
TCACCACCTTCAGTCTTACCCTGCATGTCGTCCTCGACCTTCGCCCTTTC
TTTCTGCTTTTTCTTCTTTTTCTTCTTGACCTTTTTTGCCTTCGCTTCGT
CCTCTTCGTCTGCTCCTGCCTCAGGCTGCAGCTGGCCCGCGTGCTCTTGT
TCACGTTCTGCCGCATCGGAAACGTTCGCAGCCTCTACCGCGAGTACTTC
ACCTCTACGAGTATCACTACACCCATCTGTTTTCTTATCTGCTCGCTTCT
TTTTCTTCTTCGTCTTTTCCCCTTGCTTTACTCCGTCATCCTCAGTTTCA
ACAGCCACGGGCGTTCCATCCTTTTTTCTCTTCTTCGACGACTGCTTCTC
CCCCTCATGACTCAACGAGCCCCGGGGTTGCTACTTGACAACCGCTCGAT
TGATCTTCGATTTCTTCGCGTTCTTCTCCCTCTTCTCCTTTGTCGACGGA
ACCTTCTCCATGCCTCCCGGAGTCTTCTTCGCCTTTCGCTTCTTGCCTTC
CTTGAGGCCCGATCCGTTGGCGACGGGACGGTCATCACCATCACCATCAC
CATCACCATCACCATCGGCCTTGTGTTTCTTTCTAACACTCGCGGTAACG
CCCGTATCACCACCTTCAGTCTTACCCTGCATGTCGTCCTCGACCTTCGC
CCTTTCTTTCTGCTTTTTCTTCTTTTTCTTCTTGACCTTTTTTGCCTTCG
CTTCGTCCTCTTCGTCTGCTCCTGCCTCAGGCTGCAGCTGGCCCGCGTGC
TCTTGTTCACGTTCTGCCGCATCGGAAACGTTCGCAGCCTCTACCGCGAG
TACTTCACCTCTACGAGTATCACTACACCCATCTGTTTTCTTATCTGCTC
GCTTCTTTTTCTTCTTCGTCTTTTCCCCTTGCTTTACTCCGTCATCCTCA
GTTTCAACAGCCACGGGCGTTCCATCCTTTTTTCTCTTCTTCGACGACTG
CTTCTCCCCCTC
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