mRNA_D-dichotoma_M_contig95.20220.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig95.20220.1
Unique NamemRNA_D-dichotoma_M_contig95.20220.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig95.20220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig95contigD-dichotoma_M_contig95:217354..217691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.3204892-UTR-D-dichotoma_M_contig95:217353..2173551622931200.3204892-UTR-D-dichotoma_M_contig95:217353..217355Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig95 217354..217355 +
1690799661.7717924-UTR-D-dichotoma_M_contig95:217353..2173551690799661.7717924-UTR-D-dichotoma_M_contig95:217353..217355Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig95 217354..217355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.3392613-CDS-D-dichotoma_M_contig95:217355..2176911622931200.3392613-CDS-D-dichotoma_M_contig95:217355..217691Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig95 217356..217691 +
1690799661.7832613-CDS-D-dichotoma_M_contig95:217355..2176911690799661.7832613-CDS-D-dichotoma_M_contig95:217355..217691Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig95 217356..217691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig95.20220.1prot_D-dichotoma_M_contig95.20220.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig95 217356..217691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig95.20220.1

>prot_D-dichotoma_M_contig95.20220.1 ID=prot_D-dichotoma_M_contig95.20220.1|Name=mRNA_D-dichotoma_M_contig95.20220.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=112bp
MSSETTTVVLVSGVNGCFQYFKSDIKFSAAIRGRFRCHRDLNVFVTRRTW
SRGQGGTRMDVVDAQHTPDTGRRGQNLSSGGKEGGPFLRDLESTDSILNY
SSLYQIHSTSN*
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mRNA from alignment at D-dichotoma_M_contig95:217354..217691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig95.20220.1 ID=mRNA_D-dichotoma_M_contig95.20220.1|Name=mRNA_D-dichotoma_M_contig95.20220.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=338bp|location=Sequence derived from alignment at D-dichotoma_M_contig95:217354..217691+ (Dictyota dichotoma ODC1387m male)
CGATGTCCTCAGAGACTACCACCGTGGTACTTGTTTCAGGGGTTAATGGT
TGCTTTCAATACTTCAAATCCGATATCAAGTTCTCTGCAGCCATCAGAGG
GCGTTTCAGATGTCATCGAGATCTGAATGTTTTTGTGACGCGTCGGACTT
GGTCTAGAGGTCAAGGGGGCACGCGGATGGACGTTGTTGACGCACAACAC
ACCCCAGATACCGGAAGAAGGGGCCAAAATCTGTCATCCGGGGGGAAGGA
GGGGGGTCCATTTCTTCGAGATTTAGAGTCGACTGATTCTATACTAAATT
ACAGTAGTTTGTACCAAATACACAGTACGTCGAACTAA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig95:217354..217691+

>mRNA_D-dichotoma_M_contig95.20220.1 ID=mRNA_D-dichotoma_M_contig95.20220.1|Name=mRNA_D-dichotoma_M_contig95.20220.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=672bp|location=Sequence derived from alignment at D-dichotoma_M_contig95:217354..217691+ (Dictyota dichotoma ODC1387m male)
ATGTCCTCAGAGACTACCACCGTGGTACTTGTTTCAGGGGTTAATGGTTG
CTTTCAATACTTCAAATCCGATATCAAGTTCTCTGCAGCCATCAGAGGGC
GTTTCAGATGTCATCGAGATCTGAATGTTTTTGTGACGCGTCGGACTTGG
TCTAGAGGTCAAGGGGGCACGCGGATGGACGTTGTTGACGCACAACACAC
CCCAGATACCGGAAGAAGGGGCCAAAATCTGTCATCCGGGGGGAAGGAGG
GGGGTCCATTTCTTCGAGATTTAGAGTCGACTGATTCTATACTAAATTAC
AGTAGTTTGTACCAAATACACAGTACGTCGAACTAAATGTCCTCAGAGAC
TACCACCGTGGTACTTGTTTCAGGGGTTAATGGTTGCTTTCAATACTTCA
AATCCGATATCAAGTTCTCTGCAGCCATCAGAGGGCGTTTCAGATGTCAT
CGAGATCTGAATGTTTTTGTGACGCGTCGGACTTGGTCTAGAGGTCAAGG
GGGCACGCGGATGGACGTTGTTGACGCACAACACACCCCAGATACCGGAA
GAAGGGGCCAAAATCTGTCATCCGGGGGGAAGGAGGGGGGTCCATTTCTT
CGAGATTTAGAGTCGACTGATTCTATACTAAATTACAGTAGTTTGTACCA
AATACACAGTACGTCGAACTAA
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