mRNA_D-dichotoma_M_contig946.20183.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig946.20183.1
Unique NamemRNA_D-dichotoma_M_contig946.20183.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig946.20183.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.480e-25
Identity = 69/160 (43.12%), Postives = 97/160 (60.62%), Query Frame = 3 
Query:   12 SPPRKTSKIVGMIAKSNQATHQFSTTLSNTKKVPLTCVVLDSIPRSSDDVIKVTMKHPSSDITRSSTALDTQELIDKTIGFYMRG-GSGNEESGASPASSKHMPTTGAPVPVTTGVPVSTCLAGAVKNELNHVASLVRVAPHDELQIPLEYTIEWPLEEK 488
            +PPRKTSK  G+I+KSN  TH  ST +SN KKVP+T VV+D++PRS+DDVIKVT+K P S       A+    L+  +I   M G G GN  +     S++H P T          P  + + G +KN  NH+A + ++AP   + +PLEYT+EWP E++
Sbjct:  455 APPRKTSKKRGIISKSNHVTHTHSTLISNNKKVPVTFVVVDAMPRSTDDVIKVTLKEPLSASVSECEAITDDALV--SIALEMFGSGEGNINN-----STQHPPAT----------PAGSLVTGVIKNPSNHLAWVGKIAPRGGVSVPLEYTLEWPFEKE 597
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BLAST of mRNA_D-dichotoma_M_contig946.20183.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 6.970e-25
Identity = 65/162 (40.12%), Postives = 96/162 (59.26%), Query Frame = 3 
Query:    3 VKFSPPRKTSKIVGMIAKSNQATHQFSTTLSNTKKVPLTCVVLDSIPRSSDDVIKVTMKHPSSDITRSSTALDTQELIDKTIGFYMRGGSGNEESGASPASSKHMPTTGAPVPVTTGVPVSTCLAGAVKNELNHVASLVRVAPHDELQIPLEYTIEWPLEEK 488
            +  +PPRKTS   G+I+KSN  TH  ST +SNTKKVP+TCVV+D++PRS+DDVIKVT+K P         A+    L+   +  Y  GG GN  +     +++  P T          P  + + G +K+  NH+A + ++AP   + IPL+YT+EWP E++
Sbjct:  495 ITVAPPRKTSTKRGIISKSNHVTHTHSTLISNTKKVPVTCVVVDAMPRSTDDVIKVTLKEPLPASVSECEAITDDSLVSVALEMY-GGGEGNINN-----NTQRPPAT----------PAGSLVTGVMKSPSNHLAWVGKIAPQGGVSIPLKYTVEWPFEKE 640
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BLAST of mRNA_D-dichotoma_M_contig946.20183.1 vs. uniprot
Match: D8LRM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 8.100e-25
Identity = 64/160 (40.00%), Postives = 99/160 (61.88%), Query Frame = 3 
Query:    3 VKFSPPRKTSKIVGMIAKSNQATHQFSTTLSNTKKVPLTCVVLDSIPRSSDDVIKVTMKHPS-SDITRSSTALDTQELIDKTIGFYMRGGSGNEESGASPASSKHMPTTGAPVPVTTGVPVSTCLAGAVKNELNHVASLVRVAPHDELQIPLEYTIEWPL 479
            VK +PPRKTSK  G+  K +   H  ST +SN KKVP+TCVV++++P S++++IKV ++ P+ + +T S  A++ + L+D  +  +   G   E+ G +   S    T  AP  V TG+      AG  K   NH+A +++VAP D++ IPLEYT+EWP+
Sbjct:  613 VKVAPPRKTSKQKGLFGKVDHVAHIHSTVISNKKKVPVTCVVIEALPLSTNEIIKVKLQQPAPAKVTESVEAVNDEALVDAGLAMFGGQGKDYEDDGGTTKGS----TAAAPEVVKTGI------AGITKGPTNHLAWVLKVAPQDDISIPLEYTVEWPI 762
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BLAST of mRNA_D-dichotoma_M_contig946.20183.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.870e-23
Identity = 61/162 (37.65%), Postives = 92/162 (56.79%), Query Frame = 3 
Query:    3 VKFSPPRKTSKIVGMIAKSNQATHQFSTTLSNTKKVPLTCVVLDSIPRSSDDVIKVTMKHPSSDITRSSTALDTQELIDKTIGFYMRGGSGNEESGASPASSKHMPTTGAPVPVTTGVPVSTCLAGAVKNELNHVASLVRVAPHDELQIPLEYTIEWPLEEK 488
            +  +PPRKTSK  G+ +KSN  TH  ST +SN K VP+TCVV+D++PRS+DD+IKVT+K P         A+    L+   +  +  GG GN  +     S++  P T          P  + + G  K+  NH+A + ++AP   + +PL YT+EWP E++
Sbjct:  484 ITVAPPRKTSKKRGIFSKSNHVTHTHSTLISNNKTVPVTCVVVDALPRSTDDIIKVTLKEPLPASVSECEAITDDSLVSIALETF-GGGEGNSNN-----STRRPPAT----------PAESLVTGVFKSPSNHLAWVGKIAPQGGVSVPLTYTVEWPFEKE 629
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BLAST of mRNA_D-dichotoma_M_contig946.20183.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.290e-22
Identity = 62/158 (39.24%), Postives = 91/158 (57.59%), Query Frame = 3 
Query:    3 VKFSPPRKTSKIVGMIAKSNQATHQFSTTLSNTKKVPLTCVVLDSIPRSSDDVIKVTMKHPSSDITRSSTALDTQELIDKTIGFYMRGGSGNEESGASPASSKHMPTTGAPVPVTTGVPVSTCLAGAVKNELNHVASLVRVAPHDELQIPLEYTIEWP 476
            +  +PPRKTSK  G+ +KSN  TH  ST++SN KKVP+TCVV+D++PRS++++IKVT+K P       S A+    L    +           E+G   +S+  MP      P   GV       G +K+  NH+A + ++AP  E+ +PLEYT+EWP
Sbjct:  526 ITVAPPRKTSKKRGIFSKSNHVTHTHSTSISNKKKVPVTCVVVDAMPRSTNEIIKVTLKQPPPSGVTESEAITDDVLASAALEMC--------EAGDRGSSNVQMP------PAVHGV------LGVIKSPSNHLAWVGKIAPQGEISVPLEYTVEWP 663
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BLAST of mRNA_D-dichotoma_M_contig946.20183.1 vs. uniprot
Match: A0A836CA38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA38_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.990e-13
Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 3 
Query:    9 FSPPRKTSKIVGMIAKSNQATHQFSTTLSNTKKVPLTCVVLDSIPRSSDDVIKVTMKHPSSDITRSSTALDTQELIDKTIGFYMRGGSGNEESGASPASSKHMPTTGAPVPVTTGVPVSTCLAGAVKNELNHVASLVRVAPHDELQIPLEYTIEWPLEE 485
            ++PPRKT++  G+++K+   TH   TTL+N K VP+T  ++D++PRSS+D+IKV +K P+ + T +  ++D  E +  +    +  G G                T                   V+NE   +  +VRV PH + ++P EY+IEWP ++
Sbjct:  730 YAPPRKTTRRRGLLSKTQLVTHAHCTTLNNAKAVPITVALVDAVPRSSEDLIKVMLKDPAPN-TVTDVSVDANEAL-VSAALELLEGEGXXXXXXXXXXXXXXXGT----------------LRVVQNESGKLVWIVRVPPHTDARVPFEYSIEWPADK 870
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig946.20183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LRN6_ECTSI2.480e-2543.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN7_ECTSI6.970e-2540.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRM9_ECTSI8.100e-2540.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN8_ECTSI4.870e-2337.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN5_ECTSI4.290e-2239.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA38_9STRA5.990e-1330.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig946contigD-dichotoma_M_contig946:70170..72664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue2.1e-20
Seed eggNOG ortholog2880.D8LRN7
GOsGO:0003674,GO:0005488,GO:0005515
EggNOG free text desc.Domain of unknown function (DUF4139)
EggNOG OGs28Q1A@1,2QWQ0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size939
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig946.20183.1prot_D-dichotoma_M_contig946.20183.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig946 70618..72620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931195.8250284-UTR-D-dichotoma_M_contig946:70169..706171622931195.8250284-UTR-D-dichotoma_M_contig946:70169..70617Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig946 70170..70617 -
1690799659.5814922-UTR-D-dichotoma_M_contig946:70169..706171690799659.5814922-UTR-D-dichotoma_M_contig946:70169..70617Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig946 70170..70617 -
1622931195.940163-UTR-D-dichotoma_M_contig946:72620..726641622931195.940163-UTR-D-dichotoma_M_contig946:72620..72664Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig946 72621..72664 -
1690799659.6323218-UTR-D-dichotoma_M_contig946:72620..726641690799659.6323218-UTR-D-dichotoma_M_contig946:72620..72664Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig946 72621..72664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931195.8419633-CDS-D-dichotoma_M_contig946:70617..707011622931195.8419633-CDS-D-dichotoma_M_contig946:70617..70701Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 70618..70701 -
1690799659.5967653-CDS-D-dichotoma_M_contig946:70617..707011690799659.5967653-CDS-D-dichotoma_M_contig946:70617..70701Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 70618..70701 -
1622931195.8620563-CDS-D-dichotoma_M_contig946:71057..712971622931195.8620563-CDS-D-dichotoma_M_contig946:71057..71297Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 71058..71297 -
1690799659.604909-CDS-D-dichotoma_M_contig946:71057..712971690799659.604909-CDS-D-dichotoma_M_contig946:71057..71297Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 71058..71297 -
1622931195.8766694-CDS-D-dichotoma_M_contig946:72222..723071622931195.8766694-CDS-D-dichotoma_M_contig946:72222..72307Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 72223..72307 -
1690799659.6130483-CDS-D-dichotoma_M_contig946:72222..723071690799659.6130483-CDS-D-dichotoma_M_contig946:72222..72307Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 72223..72307 -
1622931195.9043574-CDS-D-dichotoma_M_contig946:72582..726201622931195.9043574-CDS-D-dichotoma_M_contig946:72582..72620Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 72583..72620 -
1690799659.6213603-CDS-D-dichotoma_M_contig946:72582..726201690799659.6213603-CDS-D-dichotoma_M_contig946:72582..72620Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 72583..72620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig946.20183.1

>prot_D-dichotoma_M_contig946.20183.1 ID=prot_D-dichotoma_M_contig946.20183.1|Name=mRNA_D-dichotoma_M_contig946.20183.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=149bp
MIAKSNQATHQFSTTLSNTKKVPLTCVVLDSIPRSSDDVIKVTMKHPSSD
ITRSSTALDTQELIDKTIGFYMRGGSGNEESGASPASSKHMPTTGAPVPV
TTGVPVSTCLAGAVKNELNHVASLVRVAPHDELQIPLEYTIEWPLEEK*
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mRNA from alignment at D-dichotoma_M_contig946:70170..72664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig946.20183.1 ID=mRNA_D-dichotoma_M_contig946.20183.1|Name=mRNA_D-dichotoma_M_contig946.20183.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2495bp|location=Sequence derived from alignment at D-dichotoma_M_contig946:70170..72664- (Dictyota dichotoma ODC1387m male)
AGGTGAAATTCTCGCCGCCTCGCAAAACGTCCAAGATCGTGGGCATGATT
GCCAAGAGCAACCAGGCTACGCATCAGTTCAGGTAGGTGTTGTGGCTGAA
AAGCATTATTTGGAGGGGTAATGCTGCCTCATTCATGTTGGTCGTGGTTA
TCAGTAATGAGCTGAGCTCGACGAGCCATATGGGTCCGCTGAGTCTGGTG
TTGATTGAAATTTTCCCCTTCAATATCACTGGAATCCGATGGCAATCTTC
GTCACATGAGATAAGATTGACCGTTGCATTATCTCCGCGTTCATGTCCTT
AGGTTGGAACTAATCGCTCGTACGATGTGCGCTCGATGCCTCCGTACTTG
ATTGCAGCACAACCTTGTCCAACACCAAAAAGGTACCGTTGACGTGCGTC
GTGCTGGACTCGATTCCCCGTTCCAGCGATGATGTTATCAAGGTGAGTCT
CTGCATGTGATGCCCAAAGGACTGGGGGACTGAGGTAGGAAGGGACACCA
CAGTTTCTCTAGTGCGCAGTGGGTCGCGGATTGGAGCATGGAGGGCTGCG
AACGGGTCAAGGCTATGCCTCTCGTCGTATCTTGTCTACTTGTAGTGGTT
CTCATTTAGTTGAGAAAGTAGCTCTTGCTCCCACCCCCGGCGGGGCAAGG
TTGATCTGGCACGGGCAAGGAGCCCTGAACAGTTGGAAACAAGTAAGAAG
TGAATCTTTTACTTGGTAACCCGCATTGAGAGATGGGCACCGTCACCGAT
TGGTCCATTGTCGGAGTGCCTGAGAAGGAGAGTTTGGCTGCTTTTTTCTC
AGTCACGATAGCCTCCACGGGCACTTGTTTGCCACTCGGTTTATCTTTTA
CCTTTCCATTTCTGACTCTTTTGCAAGGTGTGAGGCACATGCCTCGTTTT
CGTCATGGCATGCTTGTAACAATGAAGGTCTTTGCGATTTTGCCATGACG
AAAACGCCTTGCTTAATTCATTCTTTCGAACCTTGAGAAGGTACTGAAGA
CACCATGGACCTCATGTCATCATAGCAGATACCCCTTATTATTGTGCATC
AAAGCAGCACTGCCATTGAAGACAGCTCCTTGCCTGCTATTCGTGTTGTT
GTAGCCAATGAGGACACGACGAGGAGACGCGGCTCTTTTTCTACTCGCAT
AGAACCTTGTACTACTTCCTGCACTCGTTCTCGAAGATGCACCAAGCTTT
ATCAGGCCGATTTCGTCGAATCCCGTGACATCACATGGACAAGGCTCCAG
CTTCTGTTGTAGAGTTGCCCATGTGGATGACAGCGAGGATAAGGATTCTG
CTCGCGAGCCAAACATATGGTGGAGTCCCTCTTTGTCCCATCGCTGCATG
TTTTGTTGTCGCTGAAGGTGACAATGAAGCATCCTTCTAGTGATATCACC
CGATCGTCAACCGCACTCGACACTCAAGAACTGATCGACAAGACGATTGG
CTTTTACATGAGAGGCGGAAGTGGTAATGAAGAGAGTGGAGCGTCGCCTG
CATCGTCGAAGCACATGCCTACAACGGGAGCTCCTGTCCCAGTGACCACG
GGTGTGCCAGTGAGCACCTGCTTGGCGGGTGCCGTAAAGAACGAGCTGAA
TCATGTGGTGGGTGGCGGTACTTGCTGTGTTGAAACATTTATACGGCGAG
CGCGAGTCATTCATTCCGTCGTGTGGGGGCTGATGGCTTCACTTTTGCCT
CTATTCGGCTGCCGTGTTGCTTACTCGGGTTGCTATTGATAATCAAGCTC
ATACCATGTGCCATTCGACATTACGGAGCCGACTTACAGTGCTCTCGTGC
TCTCGCGCTCTTGTACGCTTGTTCTCCCCTGTCCTCCTTCCCCGCATCAT
GGTGTTGTCCGTTTGCCACTCGCTGAACCCACGCTTCATTGGGGCGCGAT
ACGTCACTCCTGGCGGTAACGTGGTACCATGCCTTTTCACACTGACTGGG
TGGCGATGAATAGGCGTCGTTGGTGAGGGTAGCGCCTCACGATGAGCTCC
AGATTCCTCTGGAATACACGATTGAATGGCCTCTTGAGGAGAAATAGACT
TGGTCGAACGCCTCCGGTAGGTGAGGGTTGGACAAATCAATGGGTTGTGA
TTTTGGTCTGCTTCAGTAATGAAGCTTCGTGACAACGAGGAAGGTTTACG
GTCGAACTCGATATTTGAGAGTCAACAGTGCGATCGATGTACCTAGGACC
GCGGCTCCTTGTTCCTTTCGTGTCTCGTGCCCCGCGTGTCAGATGTCGTC
CCCTCTCCTTGTTTGTGGTTGTTCTTTTTTACTCTTCCTTCGAATCGCGA
GAATATTCTATGTAAGTACAGGTATAGGGGTAGGCATGATAACAAGAGTG
AGAGTGGGGTCTGTTCGCCCTTGTTTATGGATCACGTATCGCCATTTATC
CGTAGCGTACGATCATCCATGACATGGGTGGTGCATCATTGGGCTCATCA
TGAGTTACGCCATTTTGTGCCACGTATATGGTAGACGGAGTTCAT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig946:70170..72664-

>mRNA_D-dichotoma_M_contig946.20183.1 ID=mRNA_D-dichotoma_M_contig946.20183.1|Name=mRNA_D-dichotoma_M_contig946.20183.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=894bp|location=Sequence derived from alignment at D-dichotoma_M_contig946:70170..72664- (Dictyota dichotoma ODC1387m male)
ATGATTGCCAAGAGCAACCAGGCTACGCATCAGTTCAGATGATTGCCAAG
AGCAACCAGGCTACGCATCAGTTCAGCACAACCTTGTCCAACACCAAAAA
GGTACCGTTGACGTGCGTCGTGCTGGACTCGATTCCCCGTTCCAGCGATG
ATGTTATCAAGCACAACCTTGTCCAACACCAAAAAGGTACCGTTGACGTG
CGTCGTGCTGGACTCGATTCCCCGTTCCAGCGATGATGTTATCAAGGTGA
CAATGAAGCATCCTTCTAGTGATATCACCCGATCGTCAACCGCACTCGAC
ACTCAAGAACTGATCGACAAGACGATTGGCTTTTACATGAGAGGCGGAAG
TGGTAATGAAGAGAGTGGAGCGTCGCCTGCATCGTCGAAGCACATGCCTA
CAACGGGAGCTCCTGTCCCAGTGACCACGGGTGTGCCAGTGAGCACCTGC
TTGGCGGGTGCCGTAAAGAACGAGCTGAATCATGTGGTGACAATGAAGCA
TCCTTCTAGTGATATCACCCGATCGTCAACCGCACTCGACACTCAAGAAC
TGATCGACAAGACGATTGGCTTTTACATGAGAGGCGGAAGTGGTAATGAA
GAGAGTGGAGCGTCGCCTGCATCGTCGAAGCACATGCCTACAACGGGAGC
TCCTGTCCCAGTGACCACGGGTGTGCCAGTGAGCACCTGCTTGGCGGGTG
CCGTAAAGAACGAGCTGAATCATGTGGCGTCGTTGGTGAGGGTAGCGCCT
CACGATGAGCTCCAGATTCCTCTGGAATACACGATTGAATGGCCTCTTGA
GGAGAAATAGGCGTCGTTGGTGAGGGTAGCGCCTCACGATGAGCTCCAGA
TTCCTCTGGAATACACGATTGAATGGCCTCTTGAGGAGAAATAG
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