mRNA_D-dichotoma_M_contig938.20108.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig938.20108.1
Unique NamemRNA_D-dichotoma_M_contig938.20108.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig938.20108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig938contigD-dichotoma_M_contig938:168260..168686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size427
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig938.20108.1prot_D-dichotoma_M_contig938.20108.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig938 168326..168631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.3598864-UTR-D-dichotoma_M_contig938:168259..1683251622931180.3598864-UTR-D-dichotoma_M_contig938:168259..168325Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig938 168260..168325 +
1690799652.0207229-UTR-D-dichotoma_M_contig938:168259..1683251690799652.0207229-UTR-D-dichotoma_M_contig938:168259..168325Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig938 168260..168325 +
1622931180.4706554-UTR-D-dichotoma_M_contig938:168631..1686861622931180.4706554-UTR-D-dichotoma_M_contig938:168631..168686Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig938 168632..168686 +
1690799652.0467079-UTR-D-dichotoma_M_contig938:168631..1686861690799652.0467079-UTR-D-dichotoma_M_contig938:168631..168686Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig938 168632..168686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.3738246-CDS-D-dichotoma_M_contig938:168325..1686311622931180.3738246-CDS-D-dichotoma_M_contig938:168325..168631Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig938 168326..168631 +
1690799652.036836-CDS-D-dichotoma_M_contig938:168325..1686311690799652.036836-CDS-D-dichotoma_M_contig938:168325..168631Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig938 168326..168631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig938.20108.1

>prot_D-dichotoma_M_contig938.20108.1 ID=prot_D-dichotoma_M_contig938.20108.1|Name=mRNA_D-dichotoma_M_contig938.20108.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=102bp
MKMPFAVAPEKCKDQDLHISRDRPHVKQGGPDMVQMRNQCPSTPLKYIEF
RIGTKNFIFSFASLTDWSGWASLWNSVFRVFCHSFHISLCVGQAPFPCLK
Q*
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mRNA from alignment at D-dichotoma_M_contig938:168260..168686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig938.20108.1 ID=mRNA_D-dichotoma_M_contig938.20108.1|Name=mRNA_D-dichotoma_M_contig938.20108.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=427bp|location=Sequence derived from alignment at D-dichotoma_M_contig938:168260..168686+ (Dictyota dichotoma ODC1387m male)
GTCAGCTTTTGAGGTTATTTGCCGCATTCCTGGATTCGACGCTGTGATTA
TTTGCCACATCCATGGATGAAAATGCCTTTCGCGGTTGCCCCAGAGAAGT
GCAAGGACCAGGACTTGCATATCTCTAGGGATCGACCGCACGTGAAACAA
GGGGGCCCAGACATGGTACAAATGCGGAACCAATGCCCCTCCACTCCCCT
CAAATATATAGAATTTAGAATAGGAACCAAAAACTTCATTTTTTCATTTG
CCTCCCTGACTGACTGGTCTGGGTGGGCTAGTCTCTGGAATTCGGTATTT
CGGGTATTTTGTCATAGCTTCCACATTAGTTTGTGTGTGGGGCAGGCCCC
CTTCCCTTGCCTGAAACAGTAAAAAACGAAGGTTCAGACCGACACCACTT
CAATTTACTATGCAACCATTTGAATAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig938:168260..168686+

>mRNA_D-dichotoma_M_contig938.20108.1 ID=mRNA_D-dichotoma_M_contig938.20108.1|Name=mRNA_D-dichotoma_M_contig938.20108.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=612bp|location=Sequence derived from alignment at D-dichotoma_M_contig938:168260..168686+ (Dictyota dichotoma ODC1387m male)
ATGAAAATGCCTTTCGCGGTTGCCCCAGAGAAGTGCAAGGACCAGGACTT
GCATATCTCTAGGGATCGACCGCACGTGAAACAAGGGGGCCCAGACATGG
TACAAATGCGGAACCAATGCCCCTCCACTCCCCTCAAATATATAGAATTT
AGAATAGGAACCAAAAACTTCATTTTTTCATTTGCCTCCCTGACTGACTG
GTCTGGGTGGGCTAGTCTCTGGAATTCGGTATTTCGGGTATTTTGTCATA
GCTTCCACATTAGTTTGTGTGTGGGGCAGGCCCCCTTCCCTTGCCTGAAA
CAGTAAATGAAAATGCCTTTCGCGGTTGCCCCAGAGAAGTGCAAGGACCA
GGACTTGCATATCTCTAGGGATCGACCGCACGTGAAACAAGGGGGCCCAG
ACATGGTACAAATGCGGAACCAATGCCCCTCCACTCCCCTCAAATATATA
GAATTTAGAATAGGAACCAAAAACTTCATTTTTTCATTTGCCTCCCTGAC
TGACTGGTCTGGGTGGGCTAGTCTCTGGAATTCGGTATTTCGGGTATTTT
GTCATAGCTTCCACATTAGTTTGTGTGTGGGGCAGGCCCCCTTCCCTTGC
CTGAAACAGTAA
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