mRNA_D-dichotoma_M_contig931.20054.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig931.20054.1
Unique NamemRNA_D-dichotoma_M_contig931.20054.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig931.20054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig931contigD-dichotoma_M_contig931:48487..48902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig931.20054.1prot_D-dichotoma_M_contig931.20054.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig931 48487..48868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.8998656-CDS-D-dichotoma_M_contig931:48486..485461622931171.8998656-CDS-D-dichotoma_M_contig931:48486..48546Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig931 48487..48546 -
1690799647.8098497-CDS-D-dichotoma_M_contig931:48486..485461690799647.8098497-CDS-D-dichotoma_M_contig931:48486..48546Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig931 48487..48546 -
1622931171.9189274-CDS-D-dichotoma_M_contig931:48712..488681622931171.9189274-CDS-D-dichotoma_M_contig931:48712..48868Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig931 48713..48868 -
1690799647.8214011-CDS-D-dichotoma_M_contig931:48712..488681690799647.8214011-CDS-D-dichotoma_M_contig931:48712..48868Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig931 48713..48868 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.9400842-UTR-D-dichotoma_M_contig931:48868..489021622931171.9400842-UTR-D-dichotoma_M_contig931:48868..48902Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig931 48869..48902 -
1690799647.834225-UTR-D-dichotoma_M_contig931:48868..489021690799647.834225-UTR-D-dichotoma_M_contig931:48868..48902Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig931 48869..48902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig931.20054.1

>prot_D-dichotoma_M_contig931.20054.1 ID=prot_D-dichotoma_M_contig931.20054.1|Name=mRNA_D-dichotoma_M_contig931.20054.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=72bp
MGQLRLNLWRWAGTLEIEVFCVLDRQEVHELMRSVTLHVPPKESVPCSQY
RKGMDNVLRDSNFVNKVSSAVL
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mRNA from alignment at D-dichotoma_M_contig931:48487..48902-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig931.20054.1 ID=mRNA_D-dichotoma_M_contig931.20054.1|Name=mRNA_D-dichotoma_M_contig931.20054.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=416bp|location=Sequence derived from alignment at D-dichotoma_M_contig931:48487..48902- (Dictyota dichotoma ODC1387m male)
CACGTTCAGCAACGTGCGTTGAGGAAGAAAGATAATGGGGCAACTCAGAC
TGAACCTCTGGAGGTGGGCAGGCACGCTTGAAATAGAGGTTTTCTGCGTC
TTAGATCGGCAAGAGGTACATGAGCTGATGCGGTCGGTCACCCTCCATGT
ACCGCCGAAGGAGAGCGTTCCATGTTCACAGTATCGTAAGGTTCGTGGTG
TTCAAGCGTGCAGAAGGAAACTGGGTTTTTCACGTAATGAGGAGGCCCGA
GTCACGTTTGGCTTTGCAGTAATGCATGTTACTCTGAAGGACGCACCCTA
CTTTACCGGACTCGAACCTATGCCTTCCCTTCCCTGTCCATGCGCCCGCT
CTCCAGGGGATGGATAACGTGCTGCGCGACTCAAACTTTGTCAATAAGGT
TTCTTCAGCCGTTTTG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig931:48487..48902-

>mRNA_D-dichotoma_M_contig931.20054.1 ID=mRNA_D-dichotoma_M_contig931.20054.1|Name=mRNA_D-dichotoma_M_contig931.20054.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=432bp|location=Sequence derived from alignment at D-dichotoma_M_contig931:48487..48902- (Dictyota dichotoma ODC1387m male)
ATGGGGCAACTCAGACTGAACCTCTGGAGGTGGGCAGGCACGCTTGAAAT
AGAGGTTTTCTGCGTCTTAGATCGGCAAGAGGTACATGAGCTGATGCGGT
CGGTCACCCTCCATGTACCGCCGAAGGAGAGCGTTCCATGTTCACAGTAT
CGTAAGATGGGGCAACTCAGACTGAACCTCTGGAGGTGGGCAGGCACGCT
TGAAATAGAGGTTTTCTGCGTCTTAGATCGGCAAGAGGTACATGAGCTGA
TGCGGTCGGTCACCCTCCATGTACCGCCGAAGGAGAGCGTTCCATGTTCA
CAGTATCGTAAGGGGATGGATAACGTGCTGCGCGACTCAAACTTTGTCAA
TAAGGTTTCTTCAGCCGTTTTGGGGATGGATAACGTGCTGCGCGACTCAA
ACTTTGTCAATAAGGTTTCTTCAGCCGTTTTG
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