mRNA_D-dichotoma_M_contig928.20028.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig928.20028.1
Unique NamemRNA_D-dichotoma_M_contig928.20028.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5KF48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF48_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.320e-7
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 2 
Query:  227 YDVPYKRGAFANAPKGSTVAEVRLAAFKA--IKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTMRE 505
            ++VP + G+  NA + + V++  +A+      K+N PQ +  +AE + +    G +++TPPY P FQPIELFW   K+YV+  +   ++GR M E
Sbjct:  321 FEVPAE-GSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWG-LIWTPPYMPTFQPIELFWQHGKHYVSIHF---EKGRNMLE 410
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.210e-7
Identity = 33/93 (35.48%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  227 YDVPYKRGAFANAPKGSTVAEVRLAAFKA--IKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTM 499
            ++VP  +G+  NA + + V++  +A+      K+N PQ +  +AE + +    G +++TPPY P FQPIELFW   K+YV+  +   ++GR M
Sbjct:  298 FEVP-AQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWG-LIWTPPYMPTFQPIELFWQHGKHYVSIHF---EKGRNM 385
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.270e-7
Identity = 33/93 (35.48%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  227 YDVPYKRGAFANAPKGSTVAEVRLAAFKA--IKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTM 499
            ++VP  +G+  NA + + V++  +A+      K+N PQ +  +AE + +    G +++TPPY P FQPIELFW   K+YV+  +   ++GR M
Sbjct:  380 FEVP-AQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWG-LIWTPPYMPTFQPIELFWQHGKHYVSIHF---EKGRNM 467
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5KGN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.390e-7
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  227 YDVPYKRGAFANAPKGSTVAEVRLAAFKA--IKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTM 499
            ++VP  +G+  NA + + V++  +A+      K+N PQ +  +AE + +    G +++TPPY P FQPIELFW   K+Y++  +   ++GR M
Sbjct:   52 FEVP-AQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEKKAETYMREKGWG-LIWTPPYMPTFQPIELFWQHGKHYLSIHF---EKGRNM 139
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5KL68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL68_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.460e-6
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 2 
Query:  227 YDVPYKRGAFANAPKGSTVAEVRLAAFKA--IKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVA 463
            ++VP  +G+  NA + + V++  +A+      K+N PQ +  +AE + +    G +++TPPY P FQPIELFW   K+YV+
Sbjct:  331 FEVP-AQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWG-LIWTPPYMPTFQPIELFWQQGKHYVS 409
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.460e-6
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  227 YDVPYKRGAFANAPKGSTVAEVRLAAFKA--IKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTM 499
            ++VP  +G+  NA + + V++  +A+      K+N PQ +  +AE + +    G +++TPPY P FQPIELFW   K+YV+  +   ++GR +
Sbjct:  336 FEVP-AQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWG-LIWTPPYMPTFQPIELFWQHGKHYVSIHF---EKGRNI 423
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5L605_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L605_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.820e-6
Identity = 31/93 (33.33%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  227 YDVPYKRGAFANAPKGSTVAEVRLAAFKA--IKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTM 499
            ++VP  +G+  NA + + V++  +A+      K+N PQ +  +AE + +    G +++TPPY P FQP+ELFW   ++YV+  +   ++GR M
Sbjct:  105 FEVP-AQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYIREKGWG-LIWTPPYTPTFQPMELFWQHGRHYVSIHF---EKGRKM 192
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5JIC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.730e-6
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 2 
Query:  227 YDVPYKRGAF---ANAPKGSTVAEVRLAAFKAIKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTMRE 505
            ++VP + G+     N   G + AEV  A  + I+ N P+ +  R   + K N    +++TPPY P  QPIELFW   K YV+ T+   +  R MRE
Sbjct:  386 FEVPTEPGSSFPAGNREGGVSRAEVATATRENIRLNHPERLEKRVLTFMK-NKGWALIWTPPYMPSLQPIELFWQHGKQYVSVTF---ELKRKMRE 477
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: A0A6H5JG34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG34_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.580e-6
Identity = 31/91 (34.07%), Postives = 53/91 (58.24%), Query Frame = 2 
Query:  236 PYKRGAFANAPKGSTVAEVRLAAFKA--IKENRPQDILTRAEKWFKGNDAGY-MLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTM 499
            P   G+  NA + + V++  +A+      K+N P+ +  +AE + +  + G+ +++TPPY P FQPIELFW   K+YV+  +   + GR M
Sbjct:  479 PKPTGSLPNANRKNGVSKEEIASVTRTYFKKNFPKKLEEKAETYMR--EQGWRLIWTPPYMPTFQPIELFWQHGKHYVSIHF---ERGRNM 564
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BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.770e-5
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 2 
Query:  227 YDVPYKRGAF---ANAPKGSTVAEVRLAAFKAIKENRPQDILTRAEKWFKGNDAGYMLFTPPYCPDFQPIELFWGDAKNYVASTYPGDDEGRTMRE 505
            ++VP + G+     N   G + AEV  A  + I+ N P+ +  R   + K      +++TPPY P FQPIELFW   K YV+  +   +  R MRE
Sbjct:  486 FEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMK-KKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNF---ELKRKMRE 577
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig928.20028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5KF48_9PHAE3.320e-735.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LE74_9PHAE4.210e-735.48Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP14_9PHAE4.270e-735.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGN0_9PHAE5.390e-734.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL68_9PHAE1.460e-637.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE1.460e-634.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L605_9PHAE1.820e-633.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIC9_9PHAE2.730e-636.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG34_9PHAE9.580e-634.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM6_ECTSI1.770e-535.42DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig928contigD-dichotoma_M_contig928:227167..227672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size506
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.5582564-UTR-D-dichotoma_M_contig928:227166..2273451622931163.5582564-UTR-D-dichotoma_M_contig928:227166..227345Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig928 227167..227345 +
1690799643.616982-UTR-D-dichotoma_M_contig928:227166..2273451690799643.616982-UTR-D-dichotoma_M_contig928:227166..227345Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig928 227167..227345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.573826-CDS-D-dichotoma_M_contig928:227345..2276721622931163.573826-CDS-D-dichotoma_M_contig928:227345..227672Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig928 227346..227672 +
1690799643.6271143-CDS-D-dichotoma_M_contig928:227345..2276721690799643.6271143-CDS-D-dichotoma_M_contig928:227345..227672Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig928 227346..227672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig928.20028.1prot_D-dichotoma_M_contig928.20028.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig928 227346..227672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig928.20028.1

>prot_D-dichotoma_M_contig928.20028.1 ID=prot_D-dichotoma_M_contig928.20028.1|Name=mRNA_D-dichotoma_M_contig928.20028.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=109bp
MSSLYCTALAARSISSTTYRISAVHSPTLRKGPRLLRSGWLLSRQLRRIG
LKIFLPAQRSGSRAMMQDTCCSHHLTALTSSPSSSSGVMPKTTLQAPTQE
MMKVERCER
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mRNA from alignment at D-dichotoma_M_contig928:227167..227672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig928.20028.1 ID=mRNA_D-dichotoma_M_contig928.20028.1|Name=mRNA_D-dichotoma_M_contig928.20028.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=506bp|location=Sequence derived from alignment at D-dichotoma_M_contig928:227167..227672+ (Dictyota dichotoma ODC1387m male)
TCAGTAGCTTCCGAGGATCGATATTGCTGTGCTTATCTGCACTTCACCTG
AGGCATTTGGGTGAGGGACGAGACTTCGCGCCAAAAGCCTGTATCTCACC
TTACAGTACCTTCTAGCCGAGGGCTCTAGCCCCAGAAACAAGGTGGTGAA
AGTTCGAAATACAGTACTGCATCTTCGCCATGTCCAGTTTGTACTGTACT
GCCCTTGCGGCAAGAAGCATATCGAGTACGACGTACCGTATAAGCGCGGT
GCATTCGCCAACGCTCCGAAAGGGTCCACGGTTGCTGAGGTCCGGCTGGC
TGCTTTCAAGGCAATTAAGGAGAATCGGCCTCAAGATATTCTTACCCGCG
CAGAGAAGTGGTTCAAGGGCAATGATGCAGGATACATGCTGTTCACACCA
CCTTACTGCCCTGACTTCCAGCCCATCGAGCTCTTCTGGGGTGATGCCAA
AAACTACGTTGCAAGCACCTACCCAGGAGATGATGAAGGTCGAACGATGC
GAGAGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig928:227167..227672+

>mRNA_D-dichotoma_M_contig928.20028.1 ID=mRNA_D-dichotoma_M_contig928.20028.1|Name=mRNA_D-dichotoma_M_contig928.20028.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=654bp|location=Sequence derived from alignment at D-dichotoma_M_contig928:227167..227672+ (Dictyota dichotoma ODC1387m male)
ATGTCCAGTTTGTACTGTACTGCCCTTGCGGCAAGAAGCATATCGAGTAC
GACGTACCGTATAAGCGCGGTGCATTCGCCAACGCTCCGAAAGGGTCCAC
GGTTGCTGAGGTCCGGCTGGCTGCTTTCAAGGCAATTAAGGAGAATCGGC
CTCAAGATATTCTTACCCGCGCAGAGAAGTGGTTCAAGGGCAATGATGCA
GGATACATGCTGTTCACACCACCTTACTGCCCTGACTTCCAGCCCATCGA
GCTCTTCTGGGGTGATGCCAAAAACTACGTTGCAAGCACCTACCCAGGAG
ATGATGAAGGTCGAACGATGCGAGAGGATGTCCAGTTTGTACTGTACTGC
CCTTGCGGCAAGAAGCATATCGAGTACGACGTACCGTATAAGCGCGGTGC
ATTCGCCAACGCTCCGAAAGGGTCCACGGTTGCTGAGGTCCGGCTGGCTG
CTTTCAAGGCAATTAAGGAGAATCGGCCTCAAGATATTCTTACCCGCGCA
GAGAAGTGGTTCAAGGGCAATGATGCAGGATACATGCTGTTCACACCACC
TTACTGCCCTGACTTCCAGCCCATCGAGCTCTTCTGGGGTGATGCCAAAA
ACTACGTTGCAAGCACCTACCCAGGAGATGATGAAGGTCGAACGATGCGA
GAGG
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