mRNA_D-dichotoma_M_contig927.20004.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig927.20004.1
Unique NamemRNA_D-dichotoma_M_contig927.20004.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: A0A6H5KLH5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH5_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 5.180e-80
Identity = 168/386 (43.52%), Postives = 210/386 (54.40%), Query Frame = 1
Query:  223 PRRPSFSAEDIIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDD----GRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLR--------SKEERLLTSVKMGSRNMLLPLRDRSILLHASKLAIPHPTRPGEMVRMHAPPPASWLEICGKEVLQRM 1344
            PRRPSF  ED++Y+DN +L +NKPAG+LSQ DRTGD DVAALAREY+RVAA K+GEAFVA+VHRLDRPVSGVMC+ARTSKAAARLS SFR    VEKIYHAVV G L+G G++ D LV    +      GRGPRT L S              V+G +                               G R+L                             A  P S+           + G+ A LEW+ +    ++ + +       NP+ TL+R+RL+TGRKHQIR QLA MGHPVVGD RYG           + +E  +   + GS   + PL DRSILLHAS+L +PHPTR G MVR  A PP  W ++CG+  +  +
Sbjct:   36 PRRPSFRVEDVLYMDNHVLLVNKPAGLLSQSDRTGDADVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQDFLVSPDASGAVARRGRGPRTGLSS------------APVRGGA-------------------------------GGRLL-----------------------------AAGPTSS-----------SEGKLAQLEWEAIDVSPSSADRLRCPRTG-NPR-TLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSSWCQSRGGDATDESAVPPPRAGS---MEPLEDRSILLHASELIVPHPTRVGAMVRAVAAPPGMWSDLCGRSCIDEV 333          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: D8LGZ5_ECTSI (23S RNA-specific pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ5_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.510e-36
Identity = 110/307 (35.83%), Postives = 143/307 (46.58%), Query Frame = 1
Query:  439 MCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDD----GRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSR-NMLLPLRDRSILLHASKLAIPHPTRPGEMVRMHAPPPASWLEICGKEVLQRM 1344
            MC+ARTSKAAARLS SFR   +VEKIYHAVV G+L+G G++ D LV    +      GRGPR  L S            +  +G +                               G R+L                             A  P S+             G+ A LEW+ +  + ++    L      NP+ TL+R+RL+TGRKHQIR QLA MGHPVVGD RYG  R  +    ++V    R   + PL DRSILLHAS+L +PHPTR G  VR  A PP  W ++CG+  +  +
Sbjct:    1 MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRAGLSS------------VPARGGA-------------------------------GGRLL-----------------------------AAGPTSSPD-----------GKLAQLEWEAI-NVSSSSAVRLRCPRTGNPR-TLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDATDESAVPPPRRAGRIEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEV 222          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: A0A3M1NPK6_9BACT (RNA pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1NPK6_9BACT)

HSP 1 Score: 140 bits (354), Expect = 6.740e-35
Identity = 114/368 (30.98%), Postives = 155/368 (42.12%), Query Frame = 1
Query:  250 DIIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSRNMLLPLRDRSILLHASKLAIPHPTRPGEMVRMHAPPPASWLEICGKEVLQRMATA 1353
            D++YLDN +L +NKP G+L+Q D TGD DV  L + Y++   +K G  F+ +VHRLDRP SGVM +ARTSKAAARLS+ FR H + EK Y A+V GA  G+G   D+L+ V         RT                +RV  ++ HPG                                                                                 G+ A L W V+ G D               +++L+ +RL TGR HQIR QLA  GHP++GD+RYG  +                   P   R++ LH+  L + HPTR   M   H PPP SW      ++ + +ATA
Sbjct:    4 DVLYLDNHLLVVNKPPGMLAQADTTGDTDVVTLGKAYLKERFQKPGNVFLGLVHRLDRPASGVMVLARTSKAAARLSEQFRRH-SPEKRYLALVEGAWDGNGTAVDHLLKVG--------RT----------------VRVVPAT-HPG---------------------------------------------------------------------------------GKRAELAWRVL-GSDG--------------RVSLVEVRLTTGRPHQIRVQLAHRGHPLLGDLRYGARQ-------------------PFDGRNLALHSWYLGLEHPTRRVAMA-WHVPPPPSWGARFQPQIERLLATA 229          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: UPI001420CA78 (RNA pseudouridine synthase n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001420CA78)

HSP 1 Score: 137 bits (345), Expect = 1.320e-33
Identity = 114/368 (30.98%), Postives = 152/368 (41.30%), Query Frame = 1
Query:  250 DIIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSRNMLLPLRDRSILLHASKLAIPHPTRPGEMVRMH--APPPASWLEICGKEVLQRMA 1347
            D++YLDN +L +NKP G+L+Q D TGD DV  L + +++    K G  F+ +VHRLDRP SGVM +ARTSKAAARLS  FR  +  EK Y A+V G  +G+G   D+LV           RT                +RV  ++ HPG                                                                                  + A L W V+               D   +L+L+ +RL TGR HQ+R QLA  GHP++GD RYG  R                   PL  R++ LHA +L I HPTR    V MH  APPPA+W     + + +R+A
Sbjct:    4 DVLYLDNHLLVVNKPPGLLAQADHTGDPDVLTLGKAWLKARFGKPGRVFLGLVHRLDRPASGVMVLARTSKAAARLSDQFRR-RLPEKRYLALVEGVWTGAGTAVDHLVKAG--------RT----------------VRVVPAT-HPGA---------------------------------------------------------------------------------RRAELAWRVLA-------------TDEAERLSLVEVRLETGRPHQVRVQLAHRGHPLLGDFRYGASR-------------------PLDGRNLALHAYRLGIEHPTR---RVPMHWVAPPPAAWGTRFREAIRERLA 229          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: A0A848XZP8_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZP8_9BACT)

HSP 1 Score: 135 bits (340), Expect = 5.680e-33
Identity = 106/353 (30.03%), Postives = 150/353 (42.49%), Query Frame = 1
Query:  250 DIIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSRNMLLPLRDRSILLHASKLAIPHPTRPGEMVRMHAPPPASW 1308
            +++YLDN +L + KP G+L+Q DRTGD D+    + +++    K G  F+ +VHRLDRPVSGVM +ARTSKAA RLSK+FRE + VEK Y A+V G +SG+G + D L+     +DGR                    +R+  S+ HP                                                                                 +G+ AVL W  +                   +L+L+ ++L+TGR HQ+R QLA++G P++GD RYG  R                    L  R++ LHA +LA  HP R   +V   APPP SW
Sbjct:    2 EVLYLDNHLLVVVKPPGLLAQADRTGDTDLLTQGKAFLKEKFDKPGNVFLGLVHRLDRPVSGVMVLARTSKAAGRLSKAFRERR-VEKRYLALVEGRMSGAGEREDYLL----KEDGR--------------------VRIV-SADHP---------------------------------------------------------------------------------KGKRAVLRWQAL---------------GEEGRLSLVEVKLLTGRAHQVRVQLAALGTPILGDFRYGATRE-------------------LDGRNLALHAYRLAFEHPVRREPLV-FTAPPPVSW 212          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: A0A7K1ZH14_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium SB0668_bin_1 TaxID=2604896 RepID=A0A7K1ZH14_9BACT)

HSP 1 Score: 135 bits (339), Expect = 1.820e-32
Identity = 113/378 (29.89%), Postives = 156/378 (41.27%), Query Frame = 1
Query:  223 PRRPSFSAEDIIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSRNMLLPLRDRSILLHASKLAIPHP-TRPGEMVRMHAPPPASWLEICGKEVLQRMATA 1353
            P+RP      I+Y+DN +L +NKP G+L Q D T D D+  L + Y++    K G+AF+ +VHRLDRP SGV+ +ARTSKAAARLS  FR+ +  EK Y A+V G   GSG                     LR   H   A+ R G+R+                                             V  GD                                     A G+ A L+W                ++     L+LL +RL TGRKHQIR Q ++ GHP++GD RYG LR                    L  R++ LHA +L + HP TR  E +    PPP +W  +  +E+ Q +A++
Sbjct:   16 PKRPDLH---ILYMDNHLLVVNKPPGMLVQQDETNDPDLLRLGKRYLKETFAKKGQAFLGLVHRLDRPASGVVVLARTSKAAARLSDQFRQ-RTPEKEYLALVEGVCRGSGT--------------------LR---HTLAASVRGGVRI---------------------------------------------VPAGD-------------------------------------ASGKEARLQW---------------RSLGVQDDLSLLSVRLETGRKHQIRVQFSAEGHPILGDFRYGALRE-------------------LDGRNLALHAFRLTVAHPVTR--ERMTFCTPPPPAWGTLFAREIAQALASS 248          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: A0A800M4B4_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4B4_9BACT)

HSP 1 Score: 131 bits (330), Expect = 2.020e-31
Identity = 113/350 (32.29%), Postives = 146/350 (41.71%), Query Frame = 1
Query:  250 DIIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSRNMLLPLRD-RSILLHASKLAIPHPTRPGEMVRMHAPP 1296
            D++YLDN +L + KPAG+LSQ D TGD+DV   A++++R    K G  F  +VHRLDRPV G M IARTSKAA+RL++ FR+ +  EK Y A+V G L GSG + D L+             K R P        ++G RVK                                    RV  G D                                    GA+         AV+ W        T   VL +        +L+ + L TGR HQIR QL+ +GHP+VGD+RYG                      PL D R I LHA+ L I HPT+        APP
Sbjct:    4 DVLYLDNHLLVVAKPAGMLSQADDTGDLDVVTWAKDFLRREFDKPGNVFAGLVHRLDRPVGGAMVIARTSKAASRLAEQFRQ-RTPEKRYLAMVEGRLDGSGRETDWLL-------------KTRDP--------KRGTRVK------------------------------------RVRQGTD------------------------------------GAK--------RAVMTW--------TSRSVLGTR-------SLVEVGLETGRAHQIRVQLSGLGHPIVGDLRYG-------------------AEAPLGDGRGIALHATHLTIEHPTKRDRRTFTSAPP 217          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: A0A3N1UFZ4_9DELT (23S rRNA pseudouridine1911/1915/1917 synthase n=1 Tax=Desulfosoma caldarium TaxID=610254 RepID=A0A3N1UFZ4_9DELT)

HSP 1 Score: 127 bits (320), Expect = 1.190e-29
Identity = 110/352 (31.25%), Postives = 146/352 (41.48%), Query Frame = 1
Query:  253 IIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSRNMLLPLRDRSILLHASKLAIPHPTRPGEMVRMHAPPPASW 1308
            ++++DN +L + KPAG+L QGD +GD+ +  LAR++I+   +K G  FV +VHRLDRPVSG++ +ARTSKAA+RLS  FRE++  +KIY AVV G  S                                        R   +  H   G+IR +   ++                                                        +P+      K    Q A L +  V   D               Q TLL + L TGRKHQIRAQLA  G P+VGDVRYG                      PL  RSI LHA KL +PHPT+ GE V +  P P +W
Sbjct:   32 VLHVDNHLLAVYKPAGLLVQGDPSGDLSLLDLARKWIKERYKKPGNVFVGLVHRLDRPVSGLVLLARTSKAASRLSAVFRENR-AQKIYLAVVEGRPS----------------------------------------RACATLVH---GLIRQESKSVAV-------------------------------------------------------LPV------KTPGTQRAELHYRTVAFSD---------------QRTLLAVHLKTGRKHQIRAQLAHEGCPIVGDVRYG-------------------APTPLPYRSIALHAWKLTLPHPTK-GEAVEISCPLPLNW 243          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: A0A1M6P7L7_9BACT (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6P7L7_9BACT)

HSP 1 Score: 126 bits (316), Expect = 1.990e-29
Identity = 111/352 (31.53%), Postives = 144/352 (40.91%), Query Frame = 1
Query:  253 IIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSRNMLLPLRDRSILLHASKLAIPHPTRPGEMVRMHAPPPASW 1308
            ++YLDN +L +NKPAG+ SQGDR+G   V +L +  I+    K G  ++ +VHRLD PVSGVM +ARTSKAAARL + FRE + VEKIY A+V G L G GV  D + P                         R  MR+  S+ HP                                                               W                  G+ AVL W+ +                T   LTL+R+   TGRKHQIR QLA  G+PV+GD RY                 +R  L P     + LHA KL++ HPTR  E ++  AP P+ W
Sbjct:    9 VLYLDNHLLVVNKPAGLRSQGDRSGAPTVLSLGKALIKERFNKPGNVYLGLVHRLDAPVSGVMVLARTSKAAARLMQQFRE-RTVEKIYLALVEGELEGEGVWEDFIAPA------------------------RDHMRLV-SADHP---------------------------------------------------------------W------------------GKRAVLRWEALM---------------TRNGLTLVRLIPETGRKHQIRVQLAFRGYPVLGDRRYR----------------ARRWLAP---GQMALHAWKLSVTHPTR-RERMQWTAPVPSCW 218          
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Match: A0A1M5AMY6_9DELT (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Desulfacinum infernum DSM 9756 TaxID=1121391 RepID=A0A1M5AMY6_9DELT)

HSP 1 Score: 125 bits (314), Expect = 6.160e-29
Identity = 113/366 (30.87%), Postives = 148/366 (40.44%), Query Frame = 1
Query:  211 GASGPRRPSFSAEDIIYLDNQILGINKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSGVMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVSGNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSCSRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAWSPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQLTLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGSRNMLLPLRDRSILLHASKLAIPHPTRPGEMVRMHAPPPASW 1308
            G   PR     A  ++Y DN ILG+ KPAG+L QGDRTGD  +  LAR +I+    K G  F+ +VHRLDRPVSGV+  ARTSKAA+RLS+SFRE + V++ Y AVV G                     + P   +    H          RV G S                                 RV                             +A + P+               Q A L + V+               +T    +LL +RL TGRKHQIR QLA++G P+ GD+RYG  +                   PL ++ I LHA ++  PHPTR   MV +  P P  W
Sbjct:    2 GQEEPRIFFHPAWPVLYEDNHILGVYKPAGLLVQGDRTGDPCLLELARRWIKEEYGKPGNVFLGLVHRLDRPVSGVLVFARTSKAASRLSRSFRERETVKE-YLAVVEGRP-------------------KDPEATIVHHVH----------RVPGGS--------------------------------TRV-----------------------------TAGTHPA--------------AQRASLSYRVL---------------ETGGSRSLLFVRLDTGRKHQIRVQLAALGCPIAGDLRYGASK-------------------PLANQQIALHARRICFPHPTR-ASMVEIVCPVPRQW 227          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig927.20004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLH5_9PHAE5.180e-8043.52PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D8LGZ5_ECTSI1.510e-3635.8323S RNA-specific pseudouridylate synthase n=1 Tax=... [more]
A0A3M1NPK6_9BACT6.740e-3530.98RNA pseudouridine synthase n=1 Tax=Bacteroidetes b... [more]
UPI001420CA781.320e-3330.98RNA pseudouridine synthase n=1 Tax=Rhodocaloribact... [more]
A0A848XZP8_9BACT5.680e-3330.03RNA pseudouridine synthase n=1 Tax=Rhodothermaceae... [more]
A0A7K1ZH14_9BACT1.820e-3229.89RluA family pseudouridine synthase n=1 Tax=Bactero... [more]
A0A800M4B4_9BACT2.020e-3132.29RluA family pseudouridine synthase n=1 Tax=Bactero... [more]
A0A3N1UFZ4_9DELT1.190e-2931.2523S rRNA pseudouridine1911/1915/1917 synthase n=1 ... [more]
A0A1M6P7L7_9BACT1.990e-2931.53Ribosomal large subunit pseudouridine synthase D n... [more]
A0A1M5AMY6_9DELT6.160e-2930.87Ribosomal large subunit pseudouridine synthase D n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig927contigD-dichotoma_M_contig927:138306..141081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score125.2
Seed ortholog evalue7.1e-26
Seed eggNOG ortholog518766.Rmar_1191
Preferred namerluC
KEGG koko:K06177,ko:K06180
EggNOG free text desc.RNA pseudouridylate synthase
EggNOG OGs1FJD9@1100069,4NFS8@976,COG0564@1,COG0564@2
EC5.4.99.23,5.4.99.28,5.4.99.29
COG Functional cat.J
Best tax levelBacteroidetes Order II. Incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_001350.1
Exons3
Model size1658
Cds size1224
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig927.20004.1prot_D-dichotoma_M_contig927.20004.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig927 138441..140782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.5521305-UTR-D-dichotoma_M_contig927:138305..1384401622931162.5521305-UTR-D-dichotoma_M_contig927:138305..138440Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig927 138306..138440 +
1690799643.137367-UTR-D-dichotoma_M_contig927:138305..1384401690799643.137367-UTR-D-dichotoma_M_contig927:138305..138440Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig927 138306..138440 +
1622931162.6265643-UTR-D-dichotoma_M_contig927:140782..1410811622931162.6265643-UTR-D-dichotoma_M_contig927:140782..141081Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig927 140783..141081 +
1690799643.188288-UTR-D-dichotoma_M_contig927:140782..1410811690799643.188288-UTR-D-dichotoma_M_contig927:140782..141081Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig927 140783..141081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.5682075-CDS-D-dichotoma_M_contig927:138440..1385781622931162.5682075-CDS-D-dichotoma_M_contig927:138440..138578Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 138441..138578 +
1690799643.1495311-CDS-D-dichotoma_M_contig927:138440..1385781690799643.1495311-CDS-D-dichotoma_M_contig927:138440..138578Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 138441..138578 +
1622931162.5854874-CDS-D-dichotoma_M_contig927:139017..1391711622931162.5854874-CDS-D-dichotoma_M_contig927:139017..139171Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 139018..139171 +
1690799643.1617677-CDS-D-dichotoma_M_contig927:139017..1391711690799643.1617677-CDS-D-dichotoma_M_contig927:139017..139171Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 139018..139171 +
1622931162.6086054-CDS-D-dichotoma_M_contig927:139850..1407821622931162.6086054-CDS-D-dichotoma_M_contig927:139850..140782Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 139851..140782 +
1690799643.1766438-CDS-D-dichotoma_M_contig927:139850..1407821690799643.1766438-CDS-D-dichotoma_M_contig927:139850..140782Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 139851..140782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig927.20004.1

>prot_D-dichotoma_M_contig927.20004.1 ID=prot_D-dichotoma_M_contig927.20004.1|Name=mRNA_D-dichotoma_M_contig927.20004.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=408bp
MTSRLAVRGLSFHHLDKSGILIRRSGASGPRRPSFSAEDIIYLDNQILGI
NKPAGILSQGDRTGDIDVAALAREYIRVAARKSGEAFVAMVHRLDRPVSG
VMCIARTSKAAARLSKSFREHKNVEKIYHAVVVGALSGSGVQADNLVPVS
GNDDGRGPRTKLRSPYHEKEAATRQGMRVKGSSCHPGTGIIRADGLDLSC
SRANPSTLGRPSSSGARVLNGMDDVDTGDKGGDIASQEDQGGDQDNESAW
SPPSNIPLEGARFEKVARGQNAVLEWDVVCGLDATENPVLASNVDTNPQL
TLLRIRLVTGRKHQIRAQLASMGHPVVGDVRYGNLRSKEERLLTSVKMGS
RNMLLPLRDRSILLHASKLAIPHPTRPGEMVRMHAPPPASWLEICGKEVL
QRMATAF*
back to top

mRNA from alignment at D-dichotoma_M_contig927:138306..141081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig927.20004.1 ID=mRNA_D-dichotoma_M_contig927.20004.1|Name=mRNA_D-dichotoma_M_contig927.20004.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2776bp|location=Sequence derived from alignment at D-dichotoma_M_contig927:138306..141081+ (Dictyota dichotoma ODC1387m male)
CAATATGCCAGAACGTGCGTGCAGTTTACCTGTACAGTGCATTTATCACT CTTCCTCCTCTGTAGTAGTACACGATCTCCGCAGGATTGTCCTGAGCTTC ACTCCACGAACAACTGGGTGTGAACACACCGGAATATGACAAGCAGACTG GCAGTTCGTGGTCTCTCCTTCCACCACTTGGATAAGAGTGGCATACTCAT CAGGCGTTCAGGGGCCAGTGGACCAAGAAGGCCCTCCTTCTCAGCAGAGG ATATTATATACCTGGATAACCAGGTGGGTTATGGTGACTCATCCGTAGAC TATCTTGGGAGCAAAAGCAGTATGGTACATAGTATTGTGCCGTACGGCCA TGAACTCCAGATCCAGTACTTGAACACGGAATAGCGTTGTTCATACGATG CTAAAGGTCAAGAGATTAGATACTAAAGCAGTTAGGTGCTTCAGGGTAGC TGCTGTGTCTACATCACAGTGCATCATGAACGAAAGTGTGTCGCATCGCA GCACTCCTTACAAATTCGGCAACATGTATCTCACAGAGTGTATGCGGCCA TCACACAAGACTCGAATTGCCCCGGATAAGTTCGAGATGGCGTGTACTAA CGAGTGTGGGACAACGTATTTGGTGGTTCTTCAACCAGGGAGCTCGAGCC AGTTAGCAGAGGAAAGTTTCACCAGTTCCTCCATCCCCTTATTCAACTTA TCGTTGGCACAGATCCTGGGGATCAATAAACCAGCAGGAATTCTGTCTCA AGGCGATCGCACGGGAGACATCGACGTCGCTGCGTTGGCTCGAGAATACA TCAGAGTTGCTGCACGCAAATCTGGGGAGGCATTCGTCGCCATGGTGCAC AGACTTGATCGCCCAGGTCAGGAGTTTGATCCAGGAAAGACCGGGGGCTC GATCAAGAAGCTGCAAGAACTTGACCGACCCAAGAAGCAATCCCGAGAGA ACTTGCTCAGTTACAGTAGATGTCTATGAACAAGACATAGTAGTGCAAGC TTTTGCACGCCTAATCTGTTTGATGTTGCCGTATTCAAGGCATCCCCGGA TTGCATGCAAAATACCCAATCTGAACTACATGTAGTTGCCACCAACGGGT TGCCGATGTTCATGGGGTGCTGTACAGTACAGTGCGGACCTTTTCCGCCA TATTCGCGTTGCCTTATTGATGATAGGCAGACATCTACTGTATCCAAAAC CAAACGTTGCTCACCCAGCTGTAGCTTCGTCAGGAACGAAGTACCAAATT ATATCAGTACCACCGCTGTCTCGACGTTCATCTCGAGTTTGTCATTGTTC AAATGCGTCTGAACACCTGCGAATGGTCCATTGATGCCATGTGATGTAGT ACGATATTGCACTATTGTGCCATGTACATTGTTTACTACGCCCGTCACGG AAAGACCCGTGAGTCTCATCTAATCAGTACTAACACGCGCGTTCATTTCG TCGTGGGCAGCAGTACACGGTGACAGGGTGACCGACGGATTCCAGCTCGC CGTCCACCGTACGTCGCGATGCCGCAAATCTATCCTGCCCTTCAGTTTCC GGAGTGATGTGCATAGCCCGTACAAGCAAGGCTGCAGCCCGACTCTCGAA GAGTTTCCGAGAACACAAGAACGTTGAAAAAATCTACCATGCCGTCGTGG TTGGAGCTCTCTCTGGAAGTGGGGTCCAGGCGGACAACCTGGTTCCCGTT AGCGGAAATGACGATGGACGAGGTCCCAGAACAAAACTACGCTCTCCGTA CCACGAGAAGGAAGCCGCAACGAGGCAAGGCATGAGGGTGAAAGGTAGCA GTTGCCACCCAGGCACCGGCATCATCCGTGCTGACGGTTTGGACTTATCG TGTTCCAGGGCAAATCCATCGACATTGGGCAGACCGTCATCATCCGGTGC ACGAGTTCTTAATGGAATGGACGACGTCGACACCGGGGATAAGGGCGGAG ACATTGCGTCGCAAGAGGATCAAGGGGGAGACCAGGATAACGAAAGCGCT TGGTCACCTCCATCCAATATCCCCCTCGAGGGGGCTAGGTTCGAGAAGGT TGCACGGGGGCAGAACGCGGTGCTAGAATGGGATGTTGTCTGTGGCCTAG ACGCAACAGAAAATCCTGTACTGGCTTCCAACGTTGATACCAATCCCCAG CTCACACTCTTACGCATTCGCCTCGTGACCGGACGCAAGCACCAAATACG AGCACAGCTTGCTAGCATGGGACACCCCGTGGTGGGAGACGTTCGGTACG GCAACCTTCGCTCGAAAGAGGAGCGATTGTTGACAAGCGTGAAAATGGGG AGCAGAAACATGCTTTTACCTCTTCGAGACCGTAGCATCCTGCTTCATGC TAGTAAGCTGGCAATACCTCATCCCACGAGGCCAGGGGAGATGGTGCGCA TGCACGCGCCGCCACCCGCCTCGTGGCTCGAGATATGCGGAAAGGAGGTC TTGCAACGAATGGCGACCGCTTTTTAAGAGACGCGGAGAGTTGTGTACCC TCTAGCTCCTTGCGTACCTCGGTTTCAGCAGAGCAGAGCATCGTCAGCCA TGATTCCTGTCGACAATCCGTGAAGCTGTGTCGTTAACACGATTTAGTAG GCAGTTTCTGGTGACCAGTATTACTAAGGTTTTAATGGGTAGAGTGCACC CATCACATATATGTCCGTCGGAAACGTTTTGGTATGAGTCTGCTGTTCCA ACACGTTGCCGTCCTGGAGTTCAATGAAATATACACTCAGCTTTTTAGGA CGTGTTTGTCAACCGCACGAAGGGAT
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig927:138306..141081+

>mRNA_D-dichotoma_M_contig927.20004.1 ID=mRNA_D-dichotoma_M_contig927.20004.1|Name=mRNA_D-dichotoma_M_contig927.20004.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2448bp|location=Sequence derived from alignment at D-dichotoma_M_contig927:138306..141081+ (Dictyota dichotoma ODC1387m male)
ATGACAAGCAGACTGGCAGTTCGTGGTCTCTCCTTCCACCACTTGGATAA
GAGTGGCATACTCATCAGGCGTTCAGGGGCCAGTGGACCAAGAAGGCCCT
CCTTCTCAGCAGAGGATATTATATACCTGGATAACCAGATGACAAGCAGA
CTGGCAGTTCGTGGTCTCTCCTTCCACCACTTGGATAAGAGTGGCATACT
CATCAGGCGTTCAGGGGCCAGTGGACCAAGAAGGCCCTCCTTCTCAGCAG
AGGATATTATATACCTGGATAACCAGATCCTGGGGATCAATAAACCAGCA
GGAATTCTGTCTCAAGGCGATCGCACGGGAGACATCGACGTCGCTGCGTT
GGCTCGAGAATACATCAGAGTTGCTGCACGCAAATCTGGGGAGGCATTCG
TCGCCATGGTGCACAGACTTGATCGCCCAGATCCTGGGGATCAATAAACC
AGCAGGAATTCTGTCTCAAGGCGATCGCACGGGAGACATCGACGTCGCTG
CGTTGGCTCGAGAATACATCAGAGTTGCTGCACGCAAATCTGGGGAGGCA
TTCGTCGCCATGGTGCACAGACTTGATCGCCCAGTTTCCGGAGTGATGTG
CATAGCCCGTACAAGCAAGGCTGCAGCCCGACTCTCGAAGAGTTTCCGAG
AACACAAGAACGTTGAAAAAATCTACCATGCCGTCGTGGTTGGAGCTCTC
TCTGGAAGTGGGGTCCAGGCGGACAACCTGGTTCCCGTTAGCGGAAATGA
CGATGGACGAGGTCCCAGAACAAAACTACGCTCTCCGTACCACGAGAAGG
AAGCCGCAACGAGGCAAGGCATGAGGGTGAAAGGTAGCAGTTGCCACCCA
GGCACCGGCATCATCCGTGCTGACGGTTTGGACTTATCGTGTTCCAGGGC
AAATCCATCGACATTGGGCAGACCGTCATCATCCGGTGCACGAGTTCTTA
ATGGAATGGACGACGTCGACACCGGGGATAAGGGCGGAGACATTGCGTCG
CAAGAGGATCAAGGGGGAGACCAGGATAACGAAAGCGCTTGGTCACCTCC
ATCCAATATCCCCCTCGAGGGGGCTAGGTTCGAGAAGGTTGCACGGGGGC
AGAACGCGGTGCTAGAATGGGATGTTGTCTGTGGCCTAGACGCAACAGAA
AATCCTGTACTGGCTTCCAACGTTGATACCAATCCCCAGCTCACACTCTT
ACGCATTCGCCTCGTGACCGGACGCAAGCACCAAATACGAGCACAGCTTG
CTAGCATGGGACACCCCGTGGTGGGAGACGTTCGGTACGGCAACCTTCGC
TCGAAAGAGGAGCGATTGTTGACAAGCGTGAAAATGGGGAGCAGAAACAT
GCTTTTACCTCTTCGAGACCGTAGCATCCTGCTTCATGCTAGTAAGCTGG
CAATACCTCATCCCACGAGGCCAGGGGAGATGGTGCGCATGCACGCGCCG
CCACCCGCCTCGTGGCTCGAGATATGCGGAAAGGAGGTCTTGCAACGAAT
GGCGACCGCTTTTTAATTTCCGGAGTGATGTGCATAGCCCGTACAAGCAA
GGCTGCAGCCCGACTCTCGAAGAGTTTCCGAGAACACAAGAACGTTGAAA
AAATCTACCATGCCGTCGTGGTTGGAGCTCTCTCTGGAAGTGGGGTCCAG
GCGGACAACCTGGTTCCCGTTAGCGGAAATGACGATGGACGAGGTCCCAG
AACAAAACTACGCTCTCCGTACCACGAGAAGGAAGCCGCAACGAGGCAAG
GCATGAGGGTGAAAGGTAGCAGTTGCCACCCAGGCACCGGCATCATCCGT
GCTGACGGTTTGGACTTATCGTGTTCCAGGGCAAATCCATCGACATTGGG
CAGACCGTCATCATCCGGTGCACGAGTTCTTAATGGAATGGACGACGTCG
ACACCGGGGATAAGGGCGGAGACATTGCGTCGCAAGAGGATCAAGGGGGA
GACCAGGATAACGAAAGCGCTTGGTCACCTCCATCCAATATCCCCCTCGA
GGGGGCTAGGTTCGAGAAGGTTGCACGGGGGCAGAACGCGGTGCTAGAAT
GGGATGTTGTCTGTGGCCTAGACGCAACAGAAAATCCTGTACTGGCTTCC
AACGTTGATACCAATCCCCAGCTCACACTCTTACGCATTCGCCTCGTGAC
CGGACGCAAGCACCAAATACGAGCACAGCTTGCTAGCATGGGACACCCCG
TGGTGGGAGACGTTCGGTACGGCAACCTTCGCTCGAAAGAGGAGCGATTG
TTGACAAGCGTGAAAATGGGGAGCAGAAACATGCTTTTACCTCTTCGAGA
CCGTAGCATCCTGCTTCATGCTAGTAAGCTGGCAATACCTCATCCCACGA
GGCCAGGGGAGATGGTGCGCATGCACGCGCCGCCACCCGCCTCGTGGCTC
GAGATATGCGGAAAGGAGGTCTTGCAACGAATGGCGACCGCTTTTTAA
back to top