mRNA_D-dichotoma_M_contig927.19999.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig927.19999.1
Unique NamemRNA_D-dichotoma_M_contig927.19999.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig927.19999.1 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.990e-11
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 2 
Query:  170 TVHDLTRALRQRFRDTGVINDVTARLRSQFVRELRRDGLGIPGAQRA 310
            ++HD+ RALR  FR TGVI+DVTARLR QFV ELRR GLG+PGAQ A
Sbjct:   49 SLHDVKRALRDNFRATGVIDDVTARLRRQFVLELRRKGLGVPGAQEA 95
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig927.19999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY8_ECTSI1.990e-1172.34LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig927contigD-dichotoma_M_contig927:56049..62491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig927.19999.1prot_D-dichotoma_M_contig927.19999.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig927 56049..62418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.8053684-CDS-D-dichotoma_M_contig927:56048..561201622931161.8053684-CDS-D-dichotoma_M_contig927:56048..56120Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 56049..56120 -
1690799642.7609768-CDS-D-dichotoma_M_contig927:56048..561201690799642.7609768-CDS-D-dichotoma_M_contig927:56048..56120Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 56049..56120 -
1622931161.8184392-CDS-D-dichotoma_M_contig927:62253..624181622931161.8184392-CDS-D-dichotoma_M_contig927:62253..62418Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 62254..62418 -
1690799642.7718172-CDS-D-dichotoma_M_contig927:62253..624181690799642.7718172-CDS-D-dichotoma_M_contig927:62253..62418Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 62254..62418 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.8340888-UTR-D-dichotoma_M_contig927:62418..624911622931161.8340888-UTR-D-dichotoma_M_contig927:62418..62491Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig927 62419..62491 -
1690799642.7823489-UTR-D-dichotoma_M_contig927:62418..624911690799642.7823489-UTR-D-dichotoma_M_contig927:62418..62491Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig927 62419..62491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig927.19999.1

>prot_D-dichotoma_M_contig927.19999.1 ID=prot_D-dichotoma_M_contig927.19999.1|Name=mRNA_D-dichotoma_M_contig927.19999.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=79bp
MAIPEEEDLGIEPEEAAMVTDIQDPLEDDEEPTVHDLTRALRQRFRDTGV
INDVTARLRSQFVRELRRDGLGIPGAQRA
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mRNA from alignment at D-dichotoma_M_contig927:56049..62491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig927.19999.1 ID=mRNA_D-dichotoma_M_contig927.19999.1|Name=mRNA_D-dichotoma_M_contig927.19999.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=6443bp|location=Sequence derived from alignment at D-dichotoma_M_contig927:56049..62491- (Dictyota dichotoma ODC1387m male)
GCCTTCAGCCCTGGGATAATTCCTGGTATGAGCGATTTGCCATCGGAGGA
ACACCACACATCGACTGACAGAGATGGCTATTCCTGAAGAAGAGGATCTA
GGCATCGAGCCAGAGGAGGCGGCTATGGTGACCGATATCCAGGATCCTCT
CGAGGATGACGAGGAGCCTACAGTCCATGATCTTACGCGTGCACTTCGAC
AGCGTTTTCGCGACACAGGAGTCATCAACGACGTGACTGTAAGCGAAATT
GTCTCGCGGCATGGCACCGTTCTTAGCATACGAAGCCAAATCTGTTTCAA
TGTCCGCACCACCAACGGCTTCTAGTCGTGGCAAGCAGCATGGAATCCAG
CCCAGAGCTCAATGAAAAGTTGACGTAGTTCCTCTCGAGCGCATGGGGTT
TCACGAGTAATGGAGCCCTTGCATGGCGCTATCGCACATAATCCCTCGTC
ACTCACTCCGCAATAGACCAACGTTGGAATGATCAGGATTGTAGATTTCT
CTCTCTCCCCCTCCCTCGGTGTATGTATGGGTATATGCGTCAAATCGTGC
TACACCGCATCTGCGAGTAGCATTTACTCCAGTAGCAAGAAGTAGCATGA
GAGAGCATGCACTGTCGCGCAACGATCTTCTGCGGAACGTACTCATGAGG
ATAAATTTGAGCCCAACAACGCTGGATCAATCCTGATCCAATCCCTAATC
TTGGTCCCACCCACATCGTCGTCCGCCGCACGACTTTCAGCCCCGTAGCT
CTCGTAGTGTGATACCCATCCGCCACTTTTCCGTATAAAACACGTCGTGT
GGACACGCCCCAGTGGCCTGTCAGTCTCCTCCATCGTACGTACTGACATG
ACTGCAATCGAAACGCATGACACACCTTCTCGTCAGGAAGTCGTTCGCGT
GAACCTCGAGGAGATATTTCAACGAGATGCCTTCCACATGTCCGTAGTCA
ATAACTAATACAAATCCTATTCGTTACTGAGCGGTTTCCATACCAATCCC
ATGGAACGCCCAGCCTGTGAGTGACCGAGGACCTGCACGGAAGAAGGATG
TGCAGTGGGGGGAGCAATACCAAAATGGCTCTACGCCCTTTGTACTTGGA
TTTAGTGTTGGACCAAGCAAAGAGCCATTTTTTTCATTGCTCTCCGCACT
GTACGACAGTACTGTACTGTACATATGTATGCACAAGAGGGCTGCAACAG
GGTACCGTAAAGCAACCTCGATATGTGAGAAGTACTGTAGTGAAGATCAT
GAAAACCGTACGGGCTGAATCTTTAGAGTATTGATAGGCCGCGAACAGTG
ACAAGGGATCACAGGGGATTGTGCTCATTGGGATATCAGGTCTGGGATAC
AGTATACCGTACCTGGTACAGGACACTTTACCAGACAAAGACAAATGATA
CTGCTGTGACATCGGGACATTTCTACAGTACCAATGCACATATCACACGG
CCCAACCATAGAATCTTCCCCAAATTAATTCAGCCGTTGCTTCTGTGGAC
AGTGGAAACCCACCACCTCTAGATCGGCTCCACCCCGCCAAACACTCCTC
CTGCCTCTCCCAGCACGACACAGTACGGTATATACTGCAGTATACCCGTG
TACAGGAGGAGTACTGTGAATGCAAACATGAATTCCCCCCGGGCCGTATT
ATTAAGACCCAGTTCACATGCCACATATCCCCCCCCCCCCCCAACCCGCT
CCTATATAGGTGAATCAAGGAGGCGTTCGTTATATGGCATGCAATACGTC
CATGATCATTGTGTGATCCGGGGTTAACGCGAGGAGTGCATGGAATGGAA
GCGACCCGCGCTTCGAGATCGTATCATTTCATTCCACGTGACGGAGGCCA
ATGATGACGATCGAACATCAACTCATCAAGCGCACTGCGATACACTTGAA
CTAGAGTCGGCCTACCTCGTGGGTGGACGGATTACTTGAACGGACACCTC
CTCCGTGTTCCCATCTTCTGGAGTCGTTGCAAGTGAGTCAAGCAAAGGGT
TGTTTGTGTTAAAACGGCCCTCCTCGTTGTACTGTTCGCGCCACTGAGGA
AGGACCGTTTCGAAGATACTGCGCATTGTTCAAATTGTAACGCCTACATC
GCTGTAGCACTACTACAGCATTTTATTCCGCAGGTTTGTCGTGTGGGGAA
ACCCTGATACAGTCCTTACACCGAGATTCCAAGAACGTTTTGTCCACAGG
AGGAACCGAATCGTACGTCCACTCTGACATAATAAGTCGAGGATCCTGCT
TAGGAAATTCTCCGATAGTAGGAAACGGACCCTACTGAGGAAGGAATCAG
CAACCATGACATGGTAGCACAAAAGGGGGGAAATTATACCCATACCCCTG
TGTTTGGATATCGTGCAACATGGACGTATTCCCTGGAGGGTGGAAGTAGC
GGCTAGATAGAGGTGGAAGTTTTGGTTATTCGCCGCGTTCATGGATGAGA
GGGTCGTTCGCGCTCCGTCCGCGTGAGCAAAATTCCCTCGTCAGGAAAAG
CGGACAGGCTTTGGTCAAGCAAGATCCTCGACGACTGTACTCGAATGGCA
CTGTGCGCTATGCAGTGCTGTACTGCAAACCCTAGGGACACAACAATTCC
ATGGCCAGGGACGCTCGCGAGCTGCTCCCCATTATTTCGCGCCGAAAAAA
AAAACTACTTTGGCTGAGACCGCGGGAACCGATATGCGAATTCAGCAACC
CTTCTTCTATACTACTGTGGTAGCCCTGAGGATCGAGTCGCTTATTTTCT
CTATTGATTTGAAGACATACTCCTGTACAGGTTCAGTAGATTCCCCGTTA
TAGAGCGGTCCTGAGTTGCGCGGCTCTCCGTCAGAGGAATTAGGTAAGGT
AACCCTTGTCGCACCACAGCGGGAAATATGCAGCCAACCGCTGCAGAGTA
CAGTACAGTATGCAGTTTGTCGCACGCGACAAAGTTCCTTTCAGTACAGC
GAGGTATAATCGCGTCCCTAGAGTAGTAGTTAGGGCCGTTCTAAACGCGC
CACATTCTTTTTCATTTGCCTGGAAAATTGAAGGCGTTCGTCCAAGTAAT
CCGTTCATGTAAATCGACTGTAGTTCAAGGGATTCGCACCCCGCTTGCGA
TATCTTATCATCTTCGGCGTCCTTTGCATGAAGTGGACTGACAGCACCTC
AGTGCGGGTCGATTCCATTCCATGCACTCGCAGCAACGCCGGACTATATG
AAGGGATTGCTTGGATCTACGCCTTCCATTTTCCAGGCATCCGGGGGAAA
AGTGGCGCGTTTAGAACGGCCCTTAGATAGCGGTTGAGGTTGGGGTTATT
ACCCGCATCCGCATGGATGAAAAGCTATCCCTCTTGAGGCTCCCAAAGGT
TATAGAGCGGATGGATGCCTTCTATATAGCACGGGTCACCTACGGCACTA
AGAGCCCAACTTCGGCGCCTAACCGGTTAAACGCGCCTGTCCCTTCTGTA
CGGCATTGGATTTGCAACATCGGGATGACGGATCAGACATTCACGGCACA
ATACTTGGGGGAAACAGGAGAATAACACCATGTCTTACTGCTATCCCTGT
CTCCTCGGTGGACCACCTCGACGAGTTACTCCGGGATTGATTCCTTGTTG
TCATGATGTCTGTGCATCCCGTATACGTCGCGTAAAATAACAGTGTACTA
TCCGCTTGCGGTTCGTAAATAGCCCTTAAGCCGCCTAGCGGAACCGTAGT
TGGGTATGTCATAATTCCGCCCCCGTTACCCCGACCGATTTGACTAGACG
TACATGAGTAAGACGCTCCCACATGAGGGGCCTGGGAGAAGAATATGCTC
TAATGCGATGAGGAAGCTAGCCATTAAAAAAAGTACTTTGAAATCGGAAG
GCTACAGTATATAGGCGTCAATCTTCCGCGCCCAGTAACCTGGGATGATC
AACGTGCAGCTGTTTAGAGATCGATTCTGTCGCAATTTGAATAACCAACA
AAACTTGTTGGTTTCGGGACTAATTAATTCAGTTGCACTTTAAATTAATT
AATCCAATCCCTCCATGCCGTGCTCACCTCAGCTATTATAGTCTAACCTC
CAGATTAAGACACCCATGGGACGTGCCTTAATCTAGAAGGTGCCTTAATC
TAGCCAAGGGATGGCTAAGTAATTTGGGGATGAAACGCAGCAAATTATCA
CATATCCTATGTCTGTATAATGCAATCTTCTTGCCGCACAGGTATACCAT
TGATATTCATGTTATGTCACGAATTTCTGTATCATCGAAACCCAGGGGGA
GCTGAAATTCCTCGGGCTAGTACGACCCTTGGGGGTGCCTTAATCCGGAG
GGGACCCTAATGAGGGGGTGTCTTAATCTGGAGGTTCAACTGCACTTCAG
TACTTCGCAGCATCGTGACGAACTGGATTTTTGATTGGCTGTACACAGTC
GTTGAAAGAATAAAAAAATTGATCTTCATACCAATTACTTGTTTTGAGTG
TGCGGAGTAGTACCCAAGATCCATCTTGTTCAAATCGTCACAAGATGGAT
GATCTTATTGACTTGCTGCTGCATTTCAAATCGAAGTCAATCGATGAAAG
AGCCGAGCCGTTTTGATACACGATGCAAAGTACGTATTGTTTTTGGTGTT
ATCCATGCAGTGCGGCCTTGTTTGCCGGCTATTCGAGGTCGGAGCAAAAG
AAACATGTACGGAATAATCAATGCCCGTAGCGCTCATGGTTTAACAGGGA
GGGTCCCCGTCCAGCGCGGTAGCCTTGGTCCCCCCAATGCGAGGAGGAGG
GGGAGGAAAACTCAGCCCTGCCCTGGGTGTCGATCGTAGGGTGACCCAGT
AAGCCACGAGCAGCATTCGAAGGGCGCAGCAGTCGGATGTGGTGGAAGCT
TTGGCCATTTTCCACTGCTTCTATGGATGGAACCGCCGACTACAGTATCC
CGAGGCCAGCCATATTTGGCGCGGGGTCCCGGTTCTGCGCGCGGTGACTT
ACAGCGCTTTAAACCGGGACCCCCCATTGCACTGGATCTATCGTATCTCT
CTCCGGCGTCCTCGAGCCTTCTTGATATTCGGTCACTCCTCGTGGCGACG
AGAAGTGGAAGATCGCGTTGGTTCCCTCCTCTACTGTGCGGCTGGGGGGA
AACCGTGAACGGCGGTCTTCAGATTTGCACCGATTGTGGGTGCAATTACC
CAACGCGAATCTGCAATGTGTAGAACGGGGGACTCCGGTTAAGTGCTTTT
GTCCAGTCTAGGACCGCGTGTTTGGTCGTATTTTAACAGGCGAAAAGCAC
CACCACCCCAGCTTTCAATGATAGGTTTGACCGCCGTGTCTCCCGCGTAA
GTGCTACAGCAGAAGCCCCCCTGACCGAGAGATCGTTCTCACCACCTTCT
CATCGATCATGGTGGGACGGACGCCAGGCATGCTTTTGTTCTCCCACCAT
CGACAGTGCAGCGACATCTCAAGTGGCTTTGGAAACCTGCACCGTCAGCG
CGTCCACCAGTCCCCACGGCCGGTTACGGCGGCGCGATGGGTAGCCAATA
ACGCGCACGCTTGGGGAGGGTAGAAACATTGTGCAACATCGACTCCACCA
TTGATTCCACGGCACCCAAGTCGGTTCTCCCGCCGCCCTCTTGCTCATCC
ACTTGGATCCCGTTGCTATCGTCGCCATCCCCATAGAGTCGCCGACAAGG
GAATGCCCGGAATCATGGCTCCGAGCAGTGTACACTCTTGACCTTTTTGG
CTGCCCGATATGCTTTCCTCCTTGAAGGAAGGCCACGTCGTCCTGTGAGC
CGCACGTCGAAGTCGTCATAGAAACGGGTCTCACGACAAAAGCCGAATGG
AAGGCGGGGGGCGGAGTCGTCGATCACTGGTCAACTGAGGGTTGTCATCT
CTCCAATCAGAGGCGTGTACACTTCTCGTGAAGCTTCAGCACCAGGTCAT
CGAGGCCCCGGTTCAGAAGGACGGCGTCGAGGAGAACTCGCCCCGAAGCC
AGTCGCCCGTTGCGCTCACAGCGGCACCCTCTCCCCGCCCCGTCTTCGGG
TCCTCGATCGATTCGTTCGACCTTTCAAGGCTTACCTTCCGTGACTCTTG
TCGTGTCGGTGTACAACTTACGTACCTCTTCTCTCCCGACGTGCTCAGAG
CGGAGTCGGGGCCAGTTCCTCCCTTCATGGTGACCGTCCATCTGTCCGAT
CGAAATAGCCCGAAGGTACTGGAAAACGTTACAATGATTCACTTGCATCA
TTTAGATCGAACCATCGCGTAGCACTACCGTAATTCGTCCTGTTACGCTG
TCGGTGCGCGCTCCCGAGTACGACCCTACTGCCTGAAACTCGCCGCCGCC
TTAACCCCCGAGGTTCTCACCACCCGGACGAACTCGCCGTGGTTGGTACC
TTGTGCTATGCTGTTCGGTAGGCACGCCTGCGCAGCCAGTTTGTCCGGGA
GCTACGAAGAGATGGGCTAGGGATCCCTGGAGCACAACGGGCT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig927:56049..62491-

>mRNA_D-dichotoma_M_contig927.19999.1 ID=mRNA_D-dichotoma_M_contig927.19999.1|Name=mRNA_D-dichotoma_M_contig927.19999.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=474bp|location=Sequence derived from alignment at D-dichotoma_M_contig927:56049..62491- (Dictyota dichotoma ODC1387m male)
ATGGCTATTCCTGAAGAAGAGGATCTAGGCATCGAGCCAGAGGAGGCGGC
TATGGTGACCGATATCCAGGATCCTCTCGAGGATGACGAGGAGCCTACAG
TCCATGATCTTACGCGTGCACTTCGACAGCGTTTTCGCGACACAGGAGTC
ATCAACGACGTGACTATGGCTATTCCTGAAGAAGAGGATCTAGGCATCGA
GCCAGAGGAGGCGGCTATGGTGACCGATATCCAGGATCCTCTCGAGGATG
ACGAGGAGCCTACAGTCCATGATCTTACGCGTGCACTTCGACAGCGTTTT
CGCGACACAGGAGTCATCAACGACGTGACTGCACGCCTGCGCAGCCAGTT
TGTCCGGGAGCTACGAAGAGATGGGCTAGGGATCCCTGGAGCACAACGGG
CTGCACGCCTGCGCAGCCAGTTTGTCCGGGAGCTACGAAGAGATGGGCTA
GGGATCCCTGGAGCACAACGGGCT
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