mRNA_D-dichotoma_M_contig927.19996.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig927.19996.1
Unique NamemRNA_D-dichotoma_M_contig927.19996.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig927.19996.1 vs. uniprot
Match: D8LGY5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY5_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.270e-12
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:  298 AATCAFAHGLGELRHPTLDDEAIAGSVTDDSSSCASLDESPAA---------VEERHYERRLPTFVLLGHGNPP 492
            A +CAFAHGLGELRHPTLDDEAIA SV++DS SC S  ++  +         V     ERRLPTFV L  GN P
Sbjct:   51 AGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTP 124
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig927.19996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY5_ECTSI1.270e-1256.76C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig927contigD-dichotoma_M_contig927:28177..32720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-14_001450.1
Exons5
Model size629
Cds size627
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig927.19996.1prot_D-dichotoma_M_contig927.19996.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig927 28177..32720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.7785332-CDS-D-dichotoma_M_contig927:28176..282531622931160.7785332-CDS-D-dichotoma_M_contig927:28176..28253Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 28177..28253 -
1690799642.4127846-CDS-D-dichotoma_M_contig927:28176..282531690799642.4127846-CDS-D-dichotoma_M_contig927:28176..28253Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 28177..28253 -
1622931160.8030148-CDS-D-dichotoma_M_contig927:29765..299531622931160.8030148-CDS-D-dichotoma_M_contig927:29765..29953Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 29766..29953 -
1690799642.4234602-CDS-D-dichotoma_M_contig927:29765..299531690799642.4234602-CDS-D-dichotoma_M_contig927:29765..29953Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 29766..29953 -
1622931160.8205159-CDS-D-dichotoma_M_contig927:30258..303891622931160.8205159-CDS-D-dichotoma_M_contig927:30258..30389Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 30259..30389 -
1690799642.434371-CDS-D-dichotoma_M_contig927:30258..303891690799642.434371-CDS-D-dichotoma_M_contig927:30258..30389Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 30259..30389 -
1622931160.8388577-CDS-D-dichotoma_M_contig927:32223..323091622931160.8388577-CDS-D-dichotoma_M_contig927:32223..32309Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 32224..32309 -
1690799642.4481657-CDS-D-dichotoma_M_contig927:32223..323091690799642.4481657-CDS-D-dichotoma_M_contig927:32223..32309Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 32224..32309 -
1622931160.856574-CDS-D-dichotoma_M_contig927:32575..327201622931160.856574-CDS-D-dichotoma_M_contig927:32575..32720Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 32576..32720 -
1690799642.4567828-CDS-D-dichotoma_M_contig927:32575..327201690799642.4567828-CDS-D-dichotoma_M_contig927:32575..32720Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig927 32576..32720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig927.19996.1

>prot_D-dichotoma_M_contig927.19996.1 ID=prot_D-dichotoma_M_contig927.19996.1|Name=mRNA_D-dichotoma_M_contig927.19996.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=209bp
RSSKTDNLNLFRPFIPGHAPGHELEPFCKTWRRGSTTLHRLSLRHVPAGS
GRCEEVGIATKAETWPIRPGYCRDKPQLLCRAPMIYPGTHLWLAAIRLSA
ATCAFAHGLGELRHPTLDDEAIAGSVTDDSSSCASLDESPAAVEERHYER
RLPTFVLLGHGNPPTPRTEAKAIGASSMSNGDGGTPASSSAFWTQNGEQV
ARSDLTRL*
back to top

mRNA from alignment at D-dichotoma_M_contig927:28177..32720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig927.19996.1 ID=mRNA_D-dichotoma_M_contig927.19996.1|Name=mRNA_D-dichotoma_M_contig927.19996.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4544bp|location=Sequence derived from alignment at D-dichotoma_M_contig927:28177..32720- (Dictyota dichotoma ODC1387m male)
CGAAGTTCAAAAACTGACAATCTGAACTTATTCAGGCCGTTTATCCCTGG
TCACGCACCAGGGCACGAACTTGAGCCTTTCTGCAAGACGTGGCGACGGG
GCTCGACGACCCTCCATAGGCTTTCTCTCAGGCATGTCCCAGCAGGTTCG
TCAAGATCAACGAGTGTGCACCATCGATTTTGGCTGTCATGGTCAAAAAT
TCAGATGGTCACAAGTACGCCGCAAATTCCTGCGAGAAATACGGATGGTA
GCTCACGTCCTCTCAGGAGCATTGCTCTTCTTCTTGGGCACATCTGGACA
ATTTTCTTGCCTGTGAGTTCATAACTCCTAGCCCTCATGCTTCGAGAAAT
GTGTGTATCGTTGGTTTGCCGTATCCAATAACTGAAGGGCCGATGATTAT
GCAATCCACAGGTTCTGGGCGGTGCGAAGAAGTCGGGATCGCGACAAAAG
CGGAGACGTGGCCGATCAGGCCAGGGTATTGTCGAGATAAACCGCAAGGT
AGGATACATGTGGAAACCAGCTGTGTTTTGATGGATCCTTGGGCTCGATG
GATGTTACTATTGTCTACACTAGGAGCGATCATGATGGTGGGCTTGTAGA
TGCGCGGATACCTGCACTTTTTACGTGCAAGATTGCAAGGATCTTCCACC
GTGACTTATTCTCGCCAGTATTTCAACCAGTGTAGACGTGCAGGCACAAT
TAGATCCTACAAGTTTCCTAAACTTTCAATGGGTGATGTGCTTCGTGCCA
AGAGCGTGGTAACGTTCAGTACGAATTTGTCAGGAGACTGTACCTCCCCG
TACCAACTCTCGTGTTGTTCAGAGGAATCGCTGCTAGTGCCTAGAGTTAA
ACATGAAAATCTTCGTGTGCCTTACTTGGTTCGATCTCCATAGCTCGGAA
TCTGTTCAATCTGTGGTTCTGCCACAAGCTTTCCCTAAGCGCTGTCGTGC
GATGGGAAACCCTACTTGCTCCGAAGAGTTTGCTCCCTTGCTCTCCATGG
AATGTATGCTTACAGCAATGCTGAGCATCAACGGATTCCGTTCGTAAGCA
GTAGGGGTGTGCTTTGAGTCGCATCGTAGGGTCAACAAAGACTTGACTTC
TGTGGCATTAATTGCCAGGAATCTATCTCTCTGGAGATCTTGGGTGTCCT
CGAACATGGCTTGATGTATGTACGTACACGTTGCTGCTGTAAGTGCCTCT
TCAGCGATCCAACAAGGGTGTGAAGATCCTCACAGCGTGTGCTCTTCAAA
GCAAGCACCCTCAAGAGTCCATGTCCAACTGCAACCTTGCCTTGTCCAAT
TGGTGACGGATCCAATTCCTCCGCCATAAAAAACGGCCCTGTGCGTCGCG
CAGTATGTAGCATGGTATCCTGAAGATCCTCAGATCTCGCGTGGTTAGGT
GGGAAAGGCATGGTATCCGCACCTTGCAGCCCGACGAGGGGTTCTTAGGT
ATCGAACAATACGGGATTACCACGGATGTGCTAAAATGAGCCTGATCTTT
TCGAACGTAACGCGTGATAGGGATACATCGAGTGCTTGTATGTCGTAGAC
TAGCTGGTTGCGTGCTTTACATGTTCGATTACACTGCCCATGTGCAGGAC
CACAGGACACCGTGATCAAGCTTTGTTGGTAAGCATGAACCCGCCGCATG
ATCCGTTGCCTGCTGGTGCTGCAACTTCTGGCCGCGCAGACCAAGCTTTG
TCATCACTGGCGCACGGGAGCCTGCCCGTACGGAGGCAAGTCGAGGAATG
CATCCCGCACGACTGGCTACAACAGACGCAAGACTCGATGAGACGTCACC
TCGGAGCATGGCTGCAATGTGGTCGTTTTACCATTAACGACGCTGTACTC
CGAGGAGATGCATCCTCCGCCAAGCGGATTTCTCTGGTAGTCACGTGTGT
ACTGTATCGCAGCACGTAATACTCAGCAAATGGCCCCGTATCCACCGAAT
CGCTCGGCAGTAGCCCTGATTGCTCAGAGTGGAAGCCTGATTGCTCAGAA
TGGAAGAGGCAATGGCACGCTCAGGATCGACGCCGACTCCCCAGACGTAG
TCCTTTTTTCCACGATGCATCGCGACCCTCCGCGACTTCCTCGTGCCCAT
TCGAGGGACGAACATTCTTGGCTCCTGTTCTTTTTTCTAGTGATGGAATG
TTCCGAGTATATCAAAAAGATGATTCATGGCCCATGGTTTGCCCCCGCAT
GAGGGGGTAAGCTGGCGACCGTTGGCCTCGCCGTGGAAACCAACGATAAA
ATGGAAGGGAACCCGCCCTGTCGAAAGTTGCAGTGCTGCTGCTAGCGCCA
AAGCTGATCCACCCTGCACCCAACGTTCTGCTTGTTGTGTCGTGCCCCGA
TGATATACCCTGGAACTCACCTTTGGCTGGCGGCGATACGTCTCTCAGCG
GCCACCTGCGCCTTCGCGCACGGCTTGGGCGAGCTAAGACACCCCACCCT
AGACGATGAAGCGTGAGTGCCACAACTCGAGGGACGAGCGGCAGGCTGGA
TCTATAGAGCGGCGGTTGGTCGATCGATTGTGAAACTTGCATGACACTTC
GTCGCTTACGTCCCTGCGAGCTCGACGAGAGCGAACGCTATCGATAAGAA
CACCGTGCTTTTCAGGTGATTTTCCGCGAGTCGGAGCTTGAAAGGACTTG
TGTCTGCTAGGTTGCCTCTTCCAGCGTGACGTTCAGGGTGTCTCGTTCGG
GGAAGTCTTATCCCCGTGATTCGTTCGAAACCCCTTCGGTCATGCACGAT
TGCGCGGGGATCCGAAGCATCGCAGGGAGTGTGACGGATGACAGTAGCTC
TTGCGCTTCGTTGGATGAATCGCCGGCGGCGGTGGAGGAGCGGCACTACG
AGCGGCGCCTCCCGACCTTCGTCCTCCTCGGCCATGGCAATCCCCCTACC
CCACGAACCGAGGCGAAGGCGATTGGAGCCTCCTCCATGTCTAACGGGGA
TGGTGGTGAGTCCGGTTGCTTGGCCTTCGAGAACGGAGCTCGTGCGTCTT
TTATCGCAGCTTACTGGGAGACCAAGGCCCTCGAGCCCCCGTCGTGTGAC
AAATGATATATGATGCGTAAGGCGAGGGTAATTCACGTCACGGCATCTGC
AGTTGCTGCCGCCCTTACCTTAGCCTTGGACTTAGTTCCAGGCTGTCCAT
GATATGCCGGGGGTGTTAGGGGTGAGGAAGGCGGCGGATGGCGATGGTCT
CTAGAGGCAGAGATAGAGCGAGGAAGATAACTGCAGTAAAAATGCCCCGT
GTGAAATTATTCGCATCTAGGCCATGTACACGGCGGTCGCCTTTGGAATT
TCACCATCGAAACCGACGGAATGCCCCGTGATATTTGTTATGTTAGCGAC
CTCTTCCCCTGTTAGGCACATTGATCGTCCGGACGCTTCACCCGTACCTC
AAAACTGGGGCCAAGCCCCCACTATACATATACATACATACCCCATGGGT
ACAAACAACGATGGCTCCTAGCCCGCTCGGTGTTCTATTTCCTCCCTGTG
AGGCATCCGAGGTTGGATAATGGTTGCCACTTCGACAGCGGCCGCATCCT
CCTTGTTCCGTGCTGTTCCCGCCACGAAGGCAGGGCAAGGCAAGGCGGCA
GCTTGTAAGGATGCGACCATGCGAAGTCGAAACGGGAGCGTCGGTGAATT
CTCGAATCAGGATGATTGATTTAGCGGGTTTGAGACCCTCACCCCGTTCC
CAAAGGACATTCAGAGTCTTCGTAGGTACCACGGCGATTGACGTGAGATA
TAACAAGGGCTCCACGGGACCCATGGAGTCGGAGGATTCAGGAGTCAGTC
GGTTAAGTGGAGGAAGGAACGGAGGAGCTATGACGGCGAAGTGTTTTGCC
AAAGAGCTAACGATGTGCGATTCAGATACCGAGGAGTCCTCCAGTCGTTG
GACCGGATCGGCAGCCTGGCAGCGCTGTAGCAAGGCCTGAAAACCTAGAA
TGAGAGGCTTGGGATGCACGTAGCGACGAGGGGCGCGTGGGGCACGTTGG
TGATGGTAGCCTGGGGTCCACCTGTTCCACTCGGAGCAGCGACTGCATAT
GTTAATAGTTGCAGCCTTTCCAGCCCCCCCAGTCACGGTAAAAATGGGGC
ACCAGTCCCAAAAGGTTCAAAGCCGCCGCGACAGGGCACGACCATAATTG
AACCAAAAAAAAAGAGACAAAAAAAGAGAAAGCAATCATACTATATTCTA
TACTGAATCCTATACTACAGTAAATAATTGATGTTTTTGGGAGTATGGTG
CCTCTATTGCACCAGCTGGGACCCCCTTGTCCCTTCTGCCGATGCCGATG
CTTGAGTCGCCGCCTCTACTTCAATCGACCCATTTTGATATCAACGATGC
GGGCTCGTGATCAAGTGGTAAGCGTTCCGGCGTTGTCAATCCTCCTCGCT
CCCCGGTCGCTCTTTGCTCGCATGTCTTCCGTCCTCTCCGTTCTCTATCC
CCGGGAACGACGATAAGGGACGCCCGCATCGAGCTCTGCGTTTTGGACAC
AGAACGGGGAGCAAGTCGCGAGATCCGATCTCACCCGCCTATGA
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig927:28177..32720-

>mRNA_D-dichotoma_M_contig927.19996.1 ID=mRNA_D-dichotoma_M_contig927.19996.1|Name=mRNA_D-dichotoma_M_contig927.19996.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1254bp|location=Sequence derived from alignment at D-dichotoma_M_contig927:28177..32720- (Dictyota dichotoma ODC1387m male)
CGAAGTTCAAAAACTGACAATCTGAACTTATTCAGGCCGTTTATCCCTGG
TCACGCACCAGGGCACGAACTTGAGCCTTTCTGCAAGACGTGGCGACGGG
GCTCGACGACCCTCCATAGGCTTTCTCTCAGGCATGTCCCAGCAGCGAAG
TTCAAAAACTGACAATCTGAACTTATTCAGGCCGTTTATCCCTGGTCACG
CACCAGGGCACGAACTTGAGCCTTTCTGCAAGACGTGGCGACGGGGCTCG
ACGACCCTCCATAGGCTTTCTCTCAGGCATGTCCCAGCAGGTTCTGGGCG
GTGCGAAGAAGTCGGGATCGCGACAAAAGCGGAGACGTGGCCGATCAGGC
CAGGGTATTGTCGAGATAAACCGCAAGTTCTGGGCGGTGCGAAGAAGTCG
GGATCGCGACAAAAGCGGAGACGTGGCCGATCAGGCCAGGGTATTGTCGA
GATAAACCGCAATTGTTGTGTCGTGCCCCGATGATATACCCTGGAACTCA
CCTTTGGCTGGCGGCGATACGTCTCTCAGCGGCCACCTGCGCCTTCGCGC
ACGGCTTGGGCGAGCTAAGACACCCCACCCTAGACGATGAAGCTTGTTGT
GTCGTGCCCCGATGATATACCCTGGAACTCACCTTTGGCTGGCGGCGATA
CGTCTCTCAGCGGCCACCTGCGCCTTCGCGCACGGCTTGGGCGAGCTAAG
ACACCCCACCCTAGACGATGAAGCCATCGCAGGGAGTGTGACGGATGACA
GTAGCTCTTGCGCTTCGTTGGATGAATCGCCGGCGGCGGTGGAGGAGCGG
CACTACGAGCGGCGCCTCCCGACCTTCGTCCTCCTCGGCCATGGCAATCC
CCCTACCCCACGAACCGAGGCGAAGGCGATTGGAGCCTCCTCCATGTCTA
ACGGGGATGGTGCATCGCAGGGAGTGTGACGGATGACAGTAGCTCTTGCG
CTTCGTTGGATGAATCGCCGGCGGCGGTGGAGGAGCGGCACTACGAGCGG
CGCCTCCCGACCTTCGTCCTCCTCGGCCATGGCAATCCCCCTACCCCACG
AACCGAGGCGAAGGCGATTGGAGCCTCCTCCATGTCTAACGGGGATGGTG
GGACGCCCGCATCGAGCTCTGCGTTTTGGACACAGAACGGGGAGCAAGTC
GCGAGATCCGATCTCACCCGCCTATGAGGACGCCCGCATCGAGCTCTGCG
TTTTGGACACAGAACGGGGAGCAAGTCGCGAGATCCGATCTCACCCGCCT
ATGA
back to top