mRNA_D-dichotoma_M_contig926.19991.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig926.19991.1
Unique NamemRNA_D-dichotoma_M_contig926.19991.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 4.760e-66
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGDKKKSQKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAGDKK++ KR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERV  ESG+LTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 193 bits (490), Expect = 9.440e-62
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGD-KKKSQKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKKAAKAPKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+ SE+G+LTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.840e-61
Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGDKKKSQKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAGDK K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+  E+GRL RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.140e-60
Identity = 100/118 (84.75%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGDKKKSQK--RIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKK G+K K++K  RIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+ SE+G+L+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 193 bits (490), Expect = 6.400e-60
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGD-KKKSQKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKKAAKAPKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+ SE+G+LTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 187 bits (474), Expect = 2.280e-59
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGDKKKSQKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKAAKAPKKAG K+   KR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+  E+ RL RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 185 bits (469), Expect = 1.410e-58
Identity = 96/116 (82.76%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGDKKKSQKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++AKAPKKA    KS+KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+ +E+G+L  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.730e-58
Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGDKKKSQKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKAA APKKAG K+ S+KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+ SE+G+L+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: A0A6G0XRP0_9STRA (Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRP0_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.350e-57
Identity = 93/114 (81.58%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:   13 PSKKAAKAPKKAGDKKKSQK--RIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            P+KK AKAPKK+G++KKS+K  R+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+G+E+ +L+RYNKK TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK+TSS
Sbjct:    6 PNKKTAKAPKKSGNEKKSRKTRRVESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIGAEASKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKYTSS 119
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BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Match: A0A835YLA9_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA9_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.350e-56
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:   16 SKKAAKAPKKAGD-KKKSQKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            SKKAAKAPKKA + KK+  KR+ESYSSYIYKVLKQVHPDTGISKRGMS+MNSFINDVFER+ SE+GRLTRYN + TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:   28 SKKAAKAPKKAVEGKKRRPKRVESYSSYIYKVLKQVHPDTGISKRGMSVMNSFINDVFERIASEAGRLTRYNNRQTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 138
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig926.19991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI4.760e-6693.10Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A836CJ22_9STRA9.440e-6288.89Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U0X3U9_9STRA5.840e-6186.21Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A485K2U0_9STRA1.140e-6084.75Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJT3_9STRA6.400e-6088.89Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU2.280e-5984.48Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
B7FWR8_PHATC1.410e-5882.76Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA4.730e-5885.34Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A6G0XRP0_9STRA5.350e-5781.58Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=10... [more]
A0A835YLA9_9STRA1.350e-5686.49Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig926contigD-dichotoma_M_contig926:141035..141385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue7e-51
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.3114562-CDS-D-dichotoma_M_contig926:141034..1413851622931160.3114562-CDS-D-dichotoma_M_contig926:141034..141385Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig926 141035..141385 -
1690799642.3566048-CDS-D-dichotoma_M_contig926:141034..1413851690799642.3566048-CDS-D-dichotoma_M_contig926:141034..141385Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig926 141035..141385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig926.19991.1prot_D-dichotoma_M_contig926.19991.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig926 141035..141385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig926.19991.1

>prot_D-dichotoma_M_contig926.19991.1 ID=prot_D-dichotoma_M_contig926.19991.1|Name=mRNA_D-dichotoma_M_contig926.19991.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=117bp
MAKTPSKKAAKAPKKAGDKKKSQKRIESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVGSESGRLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at D-dichotoma_M_contig926:141035..141385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig926.19991.1 ID=mRNA_D-dichotoma_M_contig926.19991.1|Name=mRNA_D-dichotoma_M_contig926.19991.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=351bp|location=Sequence derived from alignment at D-dichotoma_M_contig926:141035..141385- (Dictyota dichotoma ODC1387m male)
ATGGCTAAGACTCCCTCGAAGAAGGCTGCCAAAGCTCCTAAGAAGGCTGG
CGACAAGAAAAAGAGCCAGAAGAGGATTGAGTCCTACTCGTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCTGATACGGGCATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATTAACGATGTGTTCGAGAGAGTGGGCAG
TGAATCCGGAAGGCTCACAAGATACAACAAGAAGGCCACACTCTCCTCAC
GCGAGGTGCAGACAGCGGTGCGTCTGATGCTTCCCGGAGAGTTGGCGAAG
CATGCTGTTTCGGAGGGTACCAAAGCTGTCACGAAATTCACCTCATCTTA
A
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig926:141035..141385-

>mRNA_D-dichotoma_M_contig926.19991.1 ID=mRNA_D-dichotoma_M_contig926.19991.1|Name=mRNA_D-dichotoma_M_contig926.19991.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=702bp|location=Sequence derived from alignment at D-dichotoma_M_contig926:141035..141385- (Dictyota dichotoma ODC1387m male)
ATGGCTAAGACTCCCTCGAAGAAGGCTGCCAAAGCTCCTAAGAAGGCTGG
CGACAAGAAAAAGAGCCAGAAGAGGATTGAGTCCTACTCGTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCTGATACGGGCATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATTAACGATGTGTTCGAGAGAGTGGGCAG
TGAATCCGGAAGGCTCACAAGATACAACAAGAAGGCCACACTCTCCTCAC
GCGAGGTGCAGACAGCGGTGCGTCTGATGCTTCCCGGAGAGTTGGCGAAG
CATGCTGTTTCGGAGGGTACCAAAGCTGTCACGAAATTCACCTCATCTTA
AATGGCTAAGACTCCCTCGAAGAAGGCTGCCAAAGCTCCTAAGAAGGCTG
GCGACAAGAAAAAGAGCCAGAAGAGGATTGAGTCCTACTCGTCGTACATC
TACAAGGTGCTCAAGCAGGTGCACCCTGATACGGGCATCTCCAAGCGCGG
CATGTCCATCATGAACTCGTTCATTAACGATGTGTTCGAGAGAGTGGGCA
GTGAATCCGGAAGGCTCACAAGATACAACAAGAAGGCCACACTCTCCTCA
CGCGAGGTGCAGACAGCGGTGCGTCTGATGCTTCCCGGAGAGTTGGCGAA
GCATGCTGTTTCGGAGGGTACCAAAGCTGTCACGAAATTCACCTCATCTT
AA
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