mRNA_D-dichotoma_M_contig925.19984.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig925.19984.1
Unique NamemRNA_D-dichotoma_M_contig925.19984.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig925.19984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig925contigD-dichotoma_M_contig925:221153..221778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.4987254-CDS-D-dichotoma_M_contig925:221152..2213951622931159.4987254-CDS-D-dichotoma_M_contig925:221152..221395Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig925 221153..221395 +
1690799641.9865646-CDS-D-dichotoma_M_contig925:221152..2213951690799641.9865646-CDS-D-dichotoma_M_contig925:221152..221395Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig925 221153..221395 +
1622931159.5159116-CDS-D-dichotoma_M_contig925:221724..2217781622931159.5159116-CDS-D-dichotoma_M_contig925:221724..221778Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig925 221725..221778 +
1690799642.0016108-CDS-D-dichotoma_M_contig925:221724..2217781690799642.0016108-CDS-D-dichotoma_M_contig925:221724..221778Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig925 221725..221778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig925.19984.1prot_D-dichotoma_M_contig925.19984.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig925 221153..221778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig925.19984.1

>prot_D-dichotoma_M_contig925.19984.1 ID=prot_D-dichotoma_M_contig925.19984.1|Name=mRNA_D-dichotoma_M_contig925.19984.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=99bp
GIRDHSGGESRSTTSMSSQPRRHGVGTTDNAASRTAKSWNEEDPATGTDP
IGAMGRTESSQGTFAGTKVEGKRLPQRDGSRPGRGMRGGSVPKRRRGYH
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mRNA from alignment at D-dichotoma_M_contig925:221153..221778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig925.19984.1 ID=mRNA_D-dichotoma_M_contig925.19984.1|Name=mRNA_D-dichotoma_M_contig925.19984.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=626bp|location=Sequence derived from alignment at D-dichotoma_M_contig925:221153..221778+ (Dictyota dichotoma ODC1387m male)
GGGATTAGAGACCACTCTGGGGGGGAATCTCGTTCTACCACCTCCATGTC
GTCCCAACCTCGACGGCATGGGGTTGGTACCACGGATAATGCGGCATCGC
GAACGGCGAAAAGTTGGAATGAGGAAGACCCTGCAACTGGCACAGACCCG
ATTGGAGCTATGGGACGCACAGAAAGCAGCCAGGGAACTTTTGCTGGGAC
CAAAGTAGAAGGCAAACGATTACCACAGCGAGATGGTTCTAGGGTGAGCA
TGATGAGGTCGGGAAAGATAACGAAGGATAAAAATGGCTATTGTCCCTCA
GTTTATCGAACAGTTCGATTTGCTCTTGGCAGTGCTGTCCGCGTCATATG
TATCTCCCTTTGGGTTCAAGCGGTTCAACTTGGACCCTGTGAGTACTCCG
CCTTTGTTTCTTGTTTCTTTGGCTCGGTTTGTAACAGCTCATTAATGATA
CGGTGTCATGGCGCATCACAGGTGCTCCCAAGGTGACCTTTTTACGCGAT
CCTTCCTTTGGAGAGCCCCATGGATTCCCATCCACTGTAATCATTGCACT
CTCATGATTGCCACCTCATCAGCCAGGTCGAGGGATGCGCGGCGGCTCTG
TGCCCAAGAGAAGGCGTGGTTATCAT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig925:221153..221778+

>mRNA_D-dichotoma_M_contig925.19984.1 ID=mRNA_D-dichotoma_M_contig925.19984.1|Name=mRNA_D-dichotoma_M_contig925.19984.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=594bp|location=Sequence derived from alignment at D-dichotoma_M_contig925:221153..221778+ (Dictyota dichotoma ODC1387m male)
GGGATTAGAGACCACTCTGGGGGGGAATCTCGTTCTACCACCTCCATGTC
GTCCCAACCTCGACGGCATGGGGTTGGTACCACGGATAATGCGGCATCGC
GAACGGCGAAAAGTTGGAATGAGGAAGACCCTGCAACTGGCACAGACCCG
ATTGGAGCTATGGGACGCACAGAAAGCAGCCAGGGAACTTTTGCTGGGAC
CAAAGTAGAAGGCAAACGATTACCACAGCGAGATGGTTCTAGGGGGATTA
GAGACCACTCTGGGGGGGAATCTCGTTCTACCACCTCCATGTCGTCCCAA
CCTCGACGGCATGGGGTTGGTACCACGGATAATGCGGCATCGCGAACGGC
GAAAAGTTGGAATGAGGAAGACCCTGCAACTGGCACAGACCCGATTGGAG
CTATGGGACGCACAGAAAGCAGCCAGGGAACTTTTGCTGGGACCAAAGTA
GAAGGCAAACGATTACCACAGCGAGATGGTTCTAGGCCAGGTCGAGGGAT
GCGCGGCGGCTCTGTGCCCAAGAGAAGGCGTGGTTATCATCCAGGTCGAG
GGATGCGCGGCGGCTCTGTGCCCAAGAGAAGGCGTGGTTATCAT
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