mRNA_D-dichotoma_M_contig924.19977.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig924.19977.1
Unique NamemRNA_D-dichotoma_M_contig924.19977.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig924.19977.1 vs. uniprot
Match: A0A6H5KKY0_9PHAE (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.530e-20
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   34 LGRAVECLDRAIGLFKRCHDFARLRECWCLKARVCAELALQGSGDVADE--ALRERNKAAEALLAVLEAGARALAAPSPGLRIGPAEVLKYSTRAMSQVPW 330
            L RAV  LDRAI   KRCHDFA LREC  LKARVCAEL +    + +D+  A  ERN ++   LA+ +A ARALA PSPGL+IGPAEV +Y + +M  VPW
Sbjct:  865 LRRAVLNLDRAIAKLKRCHDFAGLRECLYLKARVCAEL-VSAHEEASDKYRATVERNASSRDFLAISKAVARALACPSPGLKIGPAEVRRYMSASMESVPW 964
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BLAST of mRNA_D-dichotoma_M_contig924.19977.1 vs. uniprot
Match: D7FTQ0_ECTSI (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.290e-20
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   34 LGRAVECLDRAIGLFKRCHDFARLRECWCLKARVCAELALQGSGDVADE--ALRERNKAAEALLAVLEAGARALAAPSPGLRIGPAEVLKYSTRAMSQVPW 330
            L RAV  LDRAI   KRCHDFA LREC  LKARVCAEL  +   + +D+  A  ERN ++   LAV +A ARALA PSPGL+IGPAEV +Y + ++  VPW
Sbjct:  660 LRRAVLNLDRAIAKLKRCHDFAGLRECLYLKARVCAELVSEHE-EASDKYRATVERNASSREFLAVSKAVARALACPSPGLKIGPAEVRRYMSASVESVPW 759
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig924.19977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKY0_9PHAE2.530e-2057.43Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
D7FTQ0_ECTSI4.290e-2057.43Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig924contigD-dichotoma_M_contig924:134120..136868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue6.8e-19
Seed eggNOG ortholog2880.D7FTQ0
Preferred nameAPC5
KEGG koko:K03352
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04657,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04657,map04914,map05166
KEGG ModuleM00389
GOsGO:0000151,GO:0000152,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0019538,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein K11-linked ubiquitination
EggNOG OGsKOG4322@1,KOG4322@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size856
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig924.19977.1prot_D-dichotoma_M_contig924.19977.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig924 134120..136351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.2015967-CDS-D-dichotoma_M_contig924:134119..1342451622931158.2015967-CDS-D-dichotoma_M_contig924:134119..134245Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig924 134120..134245 +
1690799641.3054967-CDS-D-dichotoma_M_contig924:134119..1342451690799641.3054967-CDS-D-dichotoma_M_contig924:134119..134245Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig924 134120..134245 +
1622931158.225269-CDS-D-dichotoma_M_contig924:136138..1363511622931158.225269-CDS-D-dichotoma_M_contig924:136138..136351Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig924 136139..136351 +
1690799641.3180318-CDS-D-dichotoma_M_contig924:136138..1363511690799641.3180318-CDS-D-dichotoma_M_contig924:136138..136351Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig924 136139..136351 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.2486224-UTR-D-dichotoma_M_contig924:136351..1368681622931158.2486224-UTR-D-dichotoma_M_contig924:136351..136868Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig924 136352..136868 +
1690799641.3271658-UTR-D-dichotoma_M_contig924:136351..1368681690799641.3271658-UTR-D-dichotoma_M_contig924:136351..136868Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig924 136352..136868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig924.19977.1

>prot_D-dichotoma_M_contig924.19977.1 ID=prot_D-dichotoma_M_contig924.19977.1|Name=mRNA_D-dichotoma_M_contig924.19977.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=113bp
GKAPGSGQGGGLGRAVECLDRAIGLFKRCHDFARLRECWCLKARVCAELA
LQGSGDVADEALRERNKAAEALLAVLEAGARALAAPSPGLRIGPAEVLKY
STRAMSQVPWVR*
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mRNA from alignment at D-dichotoma_M_contig924:134120..136868+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig924.19977.1 ID=mRNA_D-dichotoma_M_contig924.19977.1|Name=mRNA_D-dichotoma_M_contig924.19977.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2749bp|location=Sequence derived from alignment at D-dichotoma_M_contig924:134120..136868+ (Dictyota dichotoma ODC1387m male)
GGGAAGGCACCGGGGTCAGGGCAGGGTGGCGGTCTCGGGCGAGCTGTGGA
ATGCCTCGACCGTGCGATCGGGCTGTTCAAGCGGTGTCATGACTTCGCCA
GGCTGCGGGAGTGCTGGTGTCTTAAGGTAGGGAACGCGATTGGCTGTCAA
GGCGATTTTCGAACGAATTTGGTCGGCCAAGATGCTTCCTTCGATGGAAG
ACTCTTTCTATTAACGACTGAGTGGGAATGCGGCGGGTGCCCGCTCGTCT
ATCGTTTCTTAGACGACAGATGTACTTCAGGCGTGGTAAGCCAGGGGGAG
CACTGCGGAGGGTGTACAGTCGGAAACTACTCTAGCGCATCAGTTATACG
CATGAAATGCATTACAGATAATGTTCCTTGGATTTTGAATGTATATACAA
TCGACCCCCCAAATTAAGGCGCCCCATGATTGGGTTCTCCCCTCAGATTA
GCCCTTCTAGAGCTGGAACCAACAGGGTGTTGGGTTTATTATTATTCCGA
GGTAACATCCCAATACTCTACTGTACTCCGTGATCCAATCATGTACGAAA
CAAGAAATACCACAAGGTCGTGGTGTGGATACATCTATTGGTGTCCGTAT
TAGAGGGTTGGATCATAAGAGTAGAGCAGAGTAGAGTATCGGGATATTAC
CTCGGAATAATGATTAACCCAACACCCTGTACCCTGTTGGGTCCAGTCTT
AGAAGGGTTAAGGCCGCCACAAAGGTACTGTAGGAGTTCAGTACGGAAAT
TATAGGGCTGGCCGTCCCTTGGTCAGATTAAGACCACCACGATGGACGCC
TGCCTGGCTTAATCTGAGGGGTCGAATCCATATATATATATATATATATT
TGTGGCTTATCGCCTCTTGGCTCCGCCTCCACAGGGTCGTCACAGTCCTT
GAAATCGGAGCACAACGATTCTTTCGTTCATTTACTTGGGGTTAATATGT
GTCCTCTCAAAGATCCATTTTGTTAGGATTTCAAGTACTGTAGATGTGAG
AATCTCTGGCGTTCTTGCTAGAATTTCAGGTCCTGTAGTATATAGTTCGA
TATCGTTTCTTTTACGATTTGACGTATTCTAGCCACCACCAGCTCATACG
AAGCAGCAGGACAACATAACTTGTGACAAGCGTACAGTAGTAACCAGCTC
AAGGGTGCATTATAACGGAGTACGTGAGGAAACAAATGCCCAAATCTGGC
CCCACAAAATTTCTCACGAGGATGGTCCGGTGCACATTCATGGAAAACAT
GAGAACAGTCCAAATTTGACCCCCAAAAATTCGCTCACCATTTTTTTGGG
GCCAGATTTGGAATGTTTTCTTGCTCGCGTACTGTACTCCGTTCCGCCCG
TGAGCTGGTTACTACTGTAGGCAACGACCACCATTTTTCGTAGCAACGAG
CGCACAAATCCTGTAAACTGTACGATGAATGATTTTCGGGAAGAAACATA
ACGTTATAAATTAGGGTCTTAAGTCTCAATTATAACCTAGAGTTTCGGTA
TCGCCAAAATGCTGTGTCGGGTGCACGAGGGCAGGGAATGACGACTCCAC
GCATCTGGAAAAGACACAAATCACAGCCTTCTCTCGGAAAAGTCGTCGTT
CTGCACGCCCTCGTCCGCTTTGAAACCTCTTCTACCTTGTGGGGACTGGA
TCAGCACAGTTTGAACGTTGTCTTGGTGTGGGGCGCAATCAGAAGGACGG
GACGCAAGTCCTTGATATGAGTTTAGATCAAGCCACCGACGATCGTCGTG
GCCTAGGGACATCAGAACTATGGAGGCAATGCTATTTGCTTCATTCGCCC
GTGGATAGATGCCCCCCCCCAGGAACCCCATCAACCGTGCCGCGTCTGCT
GTAGTCTCCTGTTCATCGAGTAGCTAGGTGGAAGCTCCCGGTACATGGAG
GCATGCCATATCCATGTCTGTTTCCATATCCACCTTGGACTCGAGTCCGA
CTCTGCCTCTCTTAACCCCGTCAAGTTTCTAACGGGCCGTGTTGCTTTAT
CTGCCGGGTTCCCTTGCAGGCCCGAGTTTGCGCTGAGTTGGCCCTGCAAG
GCAGCGGTGACGTTGCGGACGAGGCACTGCGGGAGAGGAACAAAGCGGCT
GAGGCGTTACTGGCGGTTCTAGAGGCAGGGGCTCGTGCTCTGGCAGCCCC
TTCTCCCGGGCTGAGGATAGGCCCCGCTGAGGTGTTAAAGTATTCGACTA
GGGCCATGTCGCAGGTCCCCTGGGTCCGTTAGATTCCGACAGCAAGTATG
ATTGGTTGGCTAGCTGCTAGGTTGTATTGATTGGATGGCTTCTTTGATGC
CGTACCCGTACCCGTCCGCCGAAGAGCCGTCTTTCTCGGCTCAGCCGAGG
GGGGTCCAGATGGTCACAAATCAAAGGTTCGGCTAGTTTCAAACTAAATG
AAAGTGAATCGTCCGAGGATCTTTTTTTTGTTAAGACTTTGAAATGGTGT
ACCGACAGGTATCTGTACATGACGGAGGCCTCTTGATGGCGTGGCACACA
CAGGAGAATCTACCTACGGGAGGATGGCGTTAGTCGATTGGTTATTCGCT
CGTTCGTGAGTGTAACTCCAGCGTTCGGCCAGTCCAACGAAGCGTTCGCG
ATTCAAGGGCATTCGCCTCATTCGTTGAGTCGGTAGGAAGTTAACCCAAG
TATGAACGGTTTATTCTCGGGTGAAGGTGCACGTCTGGTCATGAACGAGG
TGCTTCTGTGAGTCCAATCGCGGTGAAAAAGAAACTCGTTATCCCATGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig924:134120..136868+

>mRNA_D-dichotoma_M_contig924.19977.1 ID=mRNA_D-dichotoma_M_contig924.19977.1|Name=mRNA_D-dichotoma_M_contig924.19977.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=678bp|location=Sequence derived from alignment at D-dichotoma_M_contig924:134120..136868+ (Dictyota dichotoma ODC1387m male)
GGGAAGGCACCGGGGTCAGGGCAGGGTGGCGGTCTCGGGCGAGCTGTGGA
ATGCCTCGACCGTGCGATCGGGCTGTTCAAGCGGTGTCATGACTTCGCCA
GGCTGCGGGAGTGCTGGTGTCTTAAGGGGAAGGCACCGGGGTCAGGGCAG
GGTGGCGGTCTCGGGCGAGCTGTGGAATGCCTCGACCGTGCGATCGGGCT
GTTCAAGCGGTGTCATGACTTCGCCAGGCTGCGGGAGTGCTGGTGTCTTA
AGGCCCGAGTTTGCGCTGAGTTGGCCCTGCAAGGCAGCGGTGACGTTGCG
GACGAGGCACTGCGGGAGAGGAACAAAGCGGCTGAGGCGTTACTGGCGGT
TCTAGAGGCAGGGGCTCGTGCTCTGGCAGCCCCTTCTCCCGGGCTGAGGA
TAGGCCCCGCTGAGGTGTTAAAGTATTCGACTAGGGCCATGTCGCAGGTC
CCCTGGGTCCGTTAGGCCCGAGTTTGCGCTGAGTTGGCCCTGCAAGGCAG
CGGTGACGTTGCGGACGAGGCACTGCGGGAGAGGAACAAAGCGGCTGAGG
CGTTACTGGCGGTTCTAGAGGCAGGGGCTCGTGCTCTGGCAGCCCCTTCT
CCCGGGCTGAGGATAGGCCCCGCTGAGGTGTTAAAGTATTCGACTAGGGC
CATGTCGCAGGTCCCCTGGGTCCGTTAG
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