mRNA_D-dichotoma_M_contig923.19973.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig923.19973.1
Unique NamemRNA_D-dichotoma_M_contig923.19973.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: D7FN85_ECTSI (Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN85_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 2.710e-40
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            QIEIL V ++G LHLGHL+GTV+HFLKKMFGPD+KTR+RGSYFPFTEPS EVDIWFKG+WMEVLGCGMVDPRVL  AG
Sbjct:  310 QIEILNVRKSGELHLGHLKGTVDHFLKKMFGPDVKTRYRGSYFPFTEPSMEVDIWFKGKWMEVLGCGMVDPRVLEMAG 387          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: A0A836CFV6_9STRA (Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 8.670e-36
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            Q+EIL +   G L L HL+GTVE FL+KMFGPD+KTRFRGS+FPFTEPS EVDIWFKGRWMEVLGCGMVDPRVL  AG
Sbjct:  285 QVEILHLRRKGELTLAHLKGTVEAFLQKMFGPDVKTRFRGSFFPFTEPSMEVDIWFKGRWMEVLGCGMVDPRVLEMAG 362          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: A0A8J9S2H4_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S2H4_PHATR)

HSP 1 Score: 129 bits (324), Expect = 1.360e-34
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            Q+EIL +E+ G L+LGHL+GTVEHFL+ MFGP++K RFRGSYFPFTEPS EVD++F+G+W+EVLGCGMVDP VL  AG
Sbjct:  230 QVEILALEKRGELNLGHLKGTVEHFLQNMFGPNIKVRFRGSYFPFTEPSMEVDVFFRGKWLEVLGCGMVDPNVLEMAG 307          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: A0A7S3LIF5_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LIF5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.640e-34
Identity = 58/78 (74.36%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            Q+EIL +E+ G L LGHL+GTVEHFLK MFGPD+K RFRGSYFPFTEPS EVD++F+ +W+EVLGCGMVDPRVL +AG
Sbjct:  176 QVEILALEKRGELTLGHLKGTVEHFLKNMFGPDIKVRFRGSYFPFTEPSMEVDVFFRNKWLEVLGCGMVDPRVLEQAG 253          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: A0A7S2W8X3_9STRA (Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W8X3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.870e-34
Identity = 58/78 (74.36%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            Q+EIL +EE G L+LGHL+GTVEHFLK+MFGPD+K RFRGS+FPFTEPS EVD++F+G+W+EVLGCGMVDP VL  AG
Sbjct:  303 QVEILALEERGKLNLGHLKGTVEHFLKEMFGPDIKVRFRGSFFPFTEPSMEVDVFFRGKWLEVLGCGMVDPNVLTMAG 380          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: A0A7S2UZU5_9STRA (Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZU5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.460e-34
Identity = 57/78 (73.08%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            Q+EIL +EE GNL LGHL+GTVE+FL+KMFG D++ +FRGS+FPFTEPS EVD++FKG+W+EVLGCGMVDPRVLR  G
Sbjct:  314 QVEILAIEELGNLTLGHLKGTVEYFLRKMFGNDIQVKFRGSFFPFTEPSMEVDVFFKGKWLEVLGCGMVDPRVLRAVG 391          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: A0A1Z5K7B5_FISSO (Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7B5_FISSO)

HSP 1 Score: 130 bits (327), Expect = 1.190e-33
Identity = 57/78 (73.08%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            Q+EIL +E+ G L+LGHL+GTVEHFLK+M GPD++ RFRGSYFPFTEPS EVD++F+G+WMEVLGCGMVDP VL  AG
Sbjct:  285 QVEILALEKRGELNLGHLKGTVEHFLKEMLGPDIQVRFRGSYFPFTEPSMEVDVFFRGKWMEVLGCGMVDPNVLEMAG 362          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: A0A7S1BJW0_9STRA (Phenylalanine--tRNA ligase alpha subunit n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJW0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.390e-32
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            Q+EIL +E+ G L LGHL+GTVE+FL++MFGPD+  RFRGSYFPFTEPS EVD++F+G+W+EVLGCGMVDP VL  AG
Sbjct:  298 QVEILAIEKRGELTLGHLKGTVEYFLQQMFGPDIDVRFRGSYFPFTEPSMEVDVFFRGKWLEVLGCGMVDPNVLEMAG 375          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: A0A7S3EN39_9RHOD (Phenylalanine--tRNA ligase alpha subunit n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EN39_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 2.000e-30
Identity = 51/74 (68.92%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVL 222
            QIEIL +++ G +HLGHL+GTV +FL++ FG D++ RFRGSYFPFTEPS EVD++F+G+W+EVLGCGMVDPRVL
Sbjct:  273 QIEILNLQKKGEVHLGHLKGTVIYFLQQFFGDDVEVRFRGSYFPFTEPSLEVDVFFRGKWLEVLGCGMVDPRVL 346          
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Match: S0F3V4_CHOCR (Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3V4_CHOCR)

HSP 1 Score: 116 bits (291), Expect = 5.520e-29
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSFEVDIWFKGRWMEVLGCGMVDPRVLRKAG 234
            QIEIL V++ G L+ G L+ TV HFLKKM G +++TRFRGSYFPFTEPS EVD++F+GRW+EVLGCGMVDP VL   G
Sbjct:  366 QIEILAVDKMGVLNFGGLKATVTHFLKKMLGEEIQTRFRGSYFPFTEPSVEVDVFFRGRWLEVLGCGMVDPAVLENVG 443          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig923.19973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN85_ECTSI2.710e-4083.33Phenylalanine--tRNA ligase alpha subunit n=2 Tax=E... [more]
A0A836CFV6_9STRA8.670e-3678.21Phenylalanine--tRNA ligase alpha subunit n=1 Tax=T... [more]
A0A8J9S2H4_PHATR1.360e-3471.79Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S3LIF5_9STRA1.640e-3474.36Phenylalanine--tRNA ligase n=1 Tax=Amphora coffeif... [more]
A0A7S2W8X3_9STRA1.870e-3474.36Phenylalanine--tRNA ligase alpha subunit n=2 Tax=E... [more]
A0A7S2UZU5_9STRA2.460e-3473.08Phenylalanine--tRNA ligase alpha subunit n=1 Tax=F... [more]
A0A1Z5K7B5_FISSO1.190e-3373.08Phenylalanine--tRNA ligase alpha subunit n=2 Tax=F... [more]
A0A7S1BJW0_9STRA3.390e-3270.51Phenylalanine--tRNA ligase alpha subunit n=4 Tax=C... [more]
A0A7S3EN39_9RHOD2.000e-3068.92Phenylalanine--tRNA ligase alpha subunit n=3 Tax=R... [more]
S0F3V4_CHOCR5.520e-2967.95Phenylalanine--tRNA ligase alpha subunit n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig923contigD-dichotoma_M_contig923:239074..239875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue4.4e-33
Seed eggNOG ortholog2880.D7FN85
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
EggNOG free text desc.phenylalanyl-tRNA aminoacylation
EggNOG OGsCOG0016@1,KOG2783@2759
EC6.1.1.20
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size235
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.5600483-CDS-D-dichotoma_M_contig923:239073..2391311622931157.5600483-CDS-D-dichotoma_M_contig923:239073..239131Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig923 239074..239131 -
1690799641.0282314-CDS-D-dichotoma_M_contig923:239073..2391311690799641.0282314-CDS-D-dichotoma_M_contig923:239073..239131Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig923 239074..239131 -
1622931157.5747335-CDS-D-dichotoma_M_contig923:239699..2398751622931157.5747335-CDS-D-dichotoma_M_contig923:239699..239875Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig923 239700..239875 -
1690799641.0420766-CDS-D-dichotoma_M_contig923:239699..2398751690799641.0420766-CDS-D-dichotoma_M_contig923:239699..239875Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig923 239700..239875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig923.19973.1prot_D-dichotoma_M_contig923.19973.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig923 239074..239875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig923.19973.1

>prot_D-dichotoma_M_contig923.19973.1 ID=prot_D-dichotoma_M_contig923.19973.1|Name=mRNA_D-dichotoma_M_contig923.19973.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=78bp
QIEILRVEEAGNLHLGHLRGTVEHFLKKMFGPDMKTRFRGSYFPFTEPSF
EVDIWFKGRWMEVLGCGMVDPRVLRKAG
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mRNA from alignment at D-dichotoma_M_contig923:239074..239875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig923.19973.1 ID=mRNA_D-dichotoma_M_contig923.19973.1|Name=mRNA_D-dichotoma_M_contig923.19973.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=802bp|location=Sequence derived from alignment at D-dichotoma_M_contig923:239074..239875- (Dictyota dichotoma ODC1387m male)
CAGATCGAGATTCTGAGGGTGGAGGAAGCTGGCAACCTGCATCTCGGCCA TCTCCGAGGCACGGTGGAGCACTTCCTCAAGAAGATGTTCGGGCCCGACA TGAAGACGAGGTTCCGGGGGAGTTACTTTCCGTTCACCGAGCCCAGTTTT GAGGTGGACATCTGGTTCAAGGGAAGGTGGGTCGATCGCCCTTGGTGTAA AGGAAGACGAAGCTGTTCGTGGGAGGCTAAGGCACTCGCCGTAACGGCAG TGTCCAGCTTACCGACGGATACCAGGACTTATCTCCCGCTCCCGATCGAC CGCTGCTGCCAGAGCTCCAATCTAGTATTTGGCTATCTGCTATATGCGTG GGAACTTTTGACTATCGAGATTAGATGCTGGTTTGACGTGTGCACGTTCC GCACCACCGACAGCTTCCTCTGGCATATGATGTACGCCAGTTAAGCCGAG AGCAGTTGCCATCTTACTGAGGGAAGTTGCTGGCTTACCAAGAGTGATTC TGGGTTACCGGTATCATCTGCCCCCCTAGCGAGAGCGGTTCCCACGCTAC CGAGAGCAGTTTCTGGCTTACCGACAGGAGGAGGACATGAATACCCTCAT CTCACCTCACCTTACGTTACGTTACGTTACCTTACCGCTCGAGCTTTTGG CAGCTACGCTGACAATGATGTGGGTCCTTGTTCCGTGGACTGCGGTCCTT GAATACATGGCAGCACTAACGCTAACGCCATGATGGCGCCACAGGTGGAT GGAGGTGTTGGGGTGCGGGATGGTAGATCCTCGGGTGCTGAGGAAGGCCG GG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig923:239074..239875-

>mRNA_D-dichotoma_M_contig923.19973.1 ID=mRNA_D-dichotoma_M_contig923.19973.1|Name=mRNA_D-dichotoma_M_contig923.19973.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=468bp|location=Sequence derived from alignment at D-dichotoma_M_contig923:239074..239875- (Dictyota dichotoma ODC1387m male)
CAGATCGAGATTCTGAGGGTGGAGGAAGCTGGCAACCTGCATCTCGGCCA
TCTCCGAGGCACGGTGGAGCACTTCCTCAAGAAGATGTTCGGGCCCGACA
TGAAGACGAGGTTCCGGGGGAGTTACTTTCCGTTCACCGAGCCCAGTTTT
GAGGTGGACATCTGGTTCAAGGGAAGCAGATCGAGATTCTGAGGGTGGAG
GAAGCTGGCAACCTGCATCTCGGCCATCTCCGAGGCACGGTGGAGCACTT
CCTCAAGAAGATGTTCGGGCCCGACATGAAGACGAGGTTCCGGGGGAGTT
ACTTTCCGTTCACCGAGCCCAGTTTTGAGGTGGACATCTGGTTCAAGGGA
AGGTGGATGGAGGTGTTGGGGTGCGGGATGGTAGATCCTCGGGTGCTGAG
GAAGGCCGGGGTGGATGGAGGTGTTGGGGTGCGGGATGGTAGATCCTCGG
GTGCTGAGGAAGGCCGGG
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