mRNA_D-dichotoma_M_contig1112.965.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1112.965.1
Unique NamemRNA_D-dichotoma_M_contig1112.965.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1112.965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1112contigD-dichotoma_M_contig1112:211179..212054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size878
Cds size861
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927625.7522748-UTR-D-dichotoma_M_contig1112:211178..2111931622927625.7522748-UTR-D-dichotoma_M_contig1112:211178..211193Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1112 211179..211193 +
1690798067.7191167-UTR-D-dichotoma_M_contig1112:211178..2111931690798067.7191167-UTR-D-dichotoma_M_contig1112:211178..211193Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1112 211179..211193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927625.7655137-CDS-D-dichotoma_M_contig1112:211193..2120541622927625.7655137-CDS-D-dichotoma_M_contig1112:211193..212054Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1112 211194..212054 +
1690798067.7295403-CDS-D-dichotoma_M_contig1112:211193..2120541690798067.7295403-CDS-D-dichotoma_M_contig1112:211193..212054Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1112 211194..212054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1112.965.1prot_D-dichotoma_M_contig1112.965.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1112 211194..212054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1112.965.1

>prot_D-dichotoma_M_contig1112.965.1 ID=prot_D-dichotoma_M_contig1112.965.1|Name=mRNA_D-dichotoma_M_contig1112.965.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=287bp
MPRYGRLIVEALLEGIWPDDFKERVATEARFREISGDPNQFYDLMEDMLP
IQTAREEERRILRPGRTWSGGNRAGHGDGTSGDGLHAGGAGGNTNSGDGG
AQGYGDGWGSSWRGSRGVAGSGFHQGGGNGGYGAYADGTRGGNGGPARGW
GWGNDGDGGYADGTSGASGGFTRGRSWGGDRGSWSRSGNGGGWSSRGHGN
GGGFSGHGHGAMVASAAVAAHISKVTAASGAVATHTTTAAASVVMVTVAT
VASAAVAAHTPKVTAASGAVATHTTTAAASVVVRLGG
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mRNA from alignment at D-dichotoma_M_contig1112:211179..212054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1112.965.1 ID=mRNA_D-dichotoma_M_contig1112.965.1|Name=mRNA_D-dichotoma_M_contig1112.965.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=876bp|location=Sequence derived from alignment at D-dichotoma_M_contig1112:211179..212054+ (Dictyota dichotoma ODC1387m male)
CAGCGTTTCAATTTCATGCCGCGGTATGGGCGGCTGATCGTGGAGGCTCT
TCTGGAAGGGATTTGGCCTGACGATTTCAAGGAGCGGGTAGCAACCGAGG
CCCGTTTTCGAGAGATTTCCGGGGATCCTAACCAATTTTACGATCTGATG
GAAGATATGCTGCCCATCCAGACGGCAAGGGAGGAGGAGCGCCGGATCCT
GCGACCTGGACGGACGTGGTCAGGAGGGAACCGGGCAGGGCACGGAGACG
GGACGAGTGGCGACGGCTTACACGCTGGTGGAGCGGGCGGCAACACAAAT
AGCGGTGACGGTGGCGCCCAGGGCTACGGCGATGGCTGGGGCTCTTCGTG
GCGCGGTTCCAGGGGTGTTGCCGGCAGTGGTTTCCACCAGGGCGGCGGCA
ATGGAGGATACGGAGCTTACGCGGATGGAACGCGTGGCGGGAATGGAGGT
CCTGCCCGTGGCTGGGGCTGGGGAAACGATGGAGACGGAGGATATGCAGA
CGGAACGAGCGGTGCCAGTGGCGGCTTCACCCGTGGCAGGAGCTGGGGAG
GCGATCGGGGGAGCTGGTCAAGAAGCGGCAATGGTGGCGGCTGGTCCAGC
CGCGGCCACGGCAACGGCGGCGGTTTCAGTGGTCATGGCCACGGTGCAAT
GGTGGCTTCAGCGGCGGTGGCGGCTCACATATCCAAGGTAACGGCGGCTT
CGGGGGCGGTGGCGACCCACACGACCACGGCAGCGGCTTCAGTGGTCATG
GTCACGGTAGCAACGGTGGCTTCAGCGGCGGTGGCGGCTCACACGCCCAA
GGTAACGGCGGCTTCGGGGGCGGTGGCGACCCACACGACCACGGCGGCGG
CTTCAGTGGTGGTCCGATTGGGAGGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1112:211179..212054+

>mRNA_D-dichotoma_M_contig1112.965.1 ID=mRNA_D-dichotoma_M_contig1112.965.1|Name=mRNA_D-dichotoma_M_contig1112.965.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1722bp|location=Sequence derived from alignment at D-dichotoma_M_contig1112:211179..212054+ (Dictyota dichotoma ODC1387m male)
ATGCCGCGGTATGGGCGGCTGATCGTGGAGGCTCTTCTGGAAGGGATTTG
GCCTGACGATTTCAAGGAGCGGGTAGCAACCGAGGCCCGTTTTCGAGAGA
TTTCCGGGGATCCTAACCAATTTTACGATCTGATGGAAGATATGCTGCCC
ATCCAGACGGCAAGGGAGGAGGAGCGCCGGATCCTGCGACCTGGACGGAC
GTGGTCAGGAGGGAACCGGGCAGGGCACGGAGACGGGACGAGTGGCGACG
GCTTACACGCTGGTGGAGCGGGCGGCAACACAAATAGCGGTGACGGTGGC
GCCCAGGGCTACGGCGATGGCTGGGGCTCTTCGTGGCGCGGTTCCAGGGG
TGTTGCCGGCAGTGGTTTCCACCAGGGCGGCGGCAATGGAGGATACGGAG
CTTACGCGGATGGAACGCGTGGCGGGAATGGAGGTCCTGCCCGTGGCTGG
GGCTGGGGAAACGATGGAGACGGAGGATATGCAGACGGAACGAGCGGTGC
CAGTGGCGGCTTCACCCGTGGCAGGAGCTGGGGAGGCGATCGGGGGAGCT
GGTCAAGAAGCGGCAATGGTGGCGGCTGGTCCAGCCGCGGCCACGGCAAC
GGCGGCGGTTTCAGTGGTCATGGCCACGGTGCAATGGTGGCTTCAGCGGC
GGTGGCGGCTCACATATCCAAGGTAACGGCGGCTTCGGGGGCGGTGGCGA
CCCACACGACCACGGCAGCGGCTTCAGTGGTCATGGTCACGGTAGCAACG
GTGGCTTCAGCGGCGGTGGCGGCTCACACGCCCAAGGTAACGGCGGCTTC
GGGGGCGGTGGCGACCCACACGACCACGGCGGCGGCTTCAGTGGTGGTCC
GATTGGGAGGGATGCCGCGGTATGGGCGGCTGATCGTGGAGGCTCTTCTG
GAAGGGATTTGGCCTGACGATTTCAAGGAGCGGGTAGCAACCGAGGCCCG
TTTTCGAGAGATTTCCGGGGATCCTAACCAATTTTACGATCTGATGGAAG
ATATGCTGCCCATCCAGACGGCAAGGGAGGAGGAGCGCCGGATCCTGCGA
CCTGGACGGACGTGGTCAGGAGGGAACCGGGCAGGGCACGGAGACGGGAC
GAGTGGCGACGGCTTACACGCTGGTGGAGCGGGCGGCAACACAAATAGCG
GTGACGGTGGCGCCCAGGGCTACGGCGATGGCTGGGGCTCTTCGTGGCGC
GGTTCCAGGGGTGTTGCCGGCAGTGGTTTCCACCAGGGCGGCGGCAATGG
AGGATACGGAGCTTACGCGGATGGAACGCGTGGCGGGAATGGAGGTCCTG
CCCGTGGCTGGGGCTGGGGAAACGATGGAGACGGAGGATATGCAGACGGA
ACGAGCGGTGCCAGTGGCGGCTTCACCCGTGGCAGGAGCTGGGGAGGCGA
TCGGGGGAGCTGGTCAAGAAGCGGCAATGGTGGCGGCTGGTCCAGCCGCG
GCCACGGCAACGGCGGCGGTTTCAGTGGTCATGGCCACGGTGCAATGGTG
GCTTCAGCGGCGGTGGCGGCTCACATATCCAAGGTAACGGCGGCTTCGGG
GGCGGTGGCGACCCACACGACCACGGCAGCGGCTTCAGTGGTCATGGTCA
CGGTAGCAACGGTGGCTTCAGCGGCGGTGGCGGCTCACACGCCCAAGGTA
ACGGCGGCTTCGGGGGCGGTGGCGACCCACACGACCACGGCGGCGGCTTC
AGTGGTGGTCCGATTGGGAGGG
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