mRNA_D-dichotoma_M_contig1112.964.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1112.964.1
Unique NamemRNA_D-dichotoma_M_contig1112.964.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1112.964.1 vs. uniprot
Match: A0A6H5JV12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV12_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.030e-22
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 MKSWPDLRDIPDHPRKVIPDHTLHQQRVSIEASGPRIRKSCPNVGVLPEGATAEGLYASRMQELAKSVVDL----PTPPG 228
            MKSWPD+RD P HPRK +PD TLHQ R  IE+   RI+ +C +   LP+G TA+GLY SRM+ELA+SVV+L    P P G
Sbjct:   89 MKSWPDVRDTPSHPRKSLPDATLHQHRHCIESCNARIKNACMHTSSLPDGMTADGLYNSRMEELAESVVELSRSTPVPFG 168
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1112.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV12_9PHAE2.030e-2257.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1112contigD-dichotoma_M_contig1112:185653..186180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927625.683131-CDS-D-dichotoma_M_contig1112:185652..1858731622927625.683131-CDS-D-dichotoma_M_contig1112:185652..185873Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1112 185653..185873 -
1690798067.6996195-CDS-D-dichotoma_M_contig1112:185652..1858731690798067.6996195-CDS-D-dichotoma_M_contig1112:185652..185873Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1112 185653..185873 -
1622927625.7199695-CDS-D-dichotoma_M_contig1112:186047..1861801622927625.7199695-CDS-D-dichotoma_M_contig1112:186047..186180Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1112 186048..186180 -
1690798067.7102554-CDS-D-dichotoma_M_contig1112:186047..1861801690798067.7102554-CDS-D-dichotoma_M_contig1112:186047..186180Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1112 186048..186180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1112.964.1prot_D-dichotoma_M_contig1112.964.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1112 185653..186180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1112.964.1

>prot_D-dichotoma_M_contig1112.964.1 ID=prot_D-dichotoma_M_contig1112.964.1|Name=mRNA_D-dichotoma_M_contig1112.964.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=118bp
MKSWPDLRDIPDHPRKVIPDHTLHQQRVSIEASGPRIRKSCPNVGVLPEG
ATAEGLYASRMQELAKSVVDLPTPPGMKESVSVGKVLAAEQGDGGDELEL
HWYMPATVRSGDPRSKYG
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mRNA from alignment at D-dichotoma_M_contig1112:185653..186180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1112.964.1 ID=mRNA_D-dichotoma_M_contig1112.964.1|Name=mRNA_D-dichotoma_M_contig1112.964.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=528bp|location=Sequence derived from alignment at D-dichotoma_M_contig1112:185653..186180- (Dictyota dichotoma ODC1387m male)
ATGAAGAGTTGGCCTGATCTGCGGGACATACCCGATCACCCGCGGAAAGT
CATCCCGGACCACACCCTCCATCAGCAACGCGTGTCCATCGAAGCGTCTG
GGCCACGAATTAGGAAATCGTGCCCCAACGTCGGTGAGATTTGTACGGGG
CTTGGTCGCGCTATTGTCACGTTCGTGCGTGATTTTTCTGTTTGATTGTT
TCTACCCGTCACGCTGGATACTGCGTAAATGTGGTCTAGCAACAAAGTAC
ACGGCAGCTGAACGTGAACTAAGTCCCGTGTAAATATCTGATGGCTTTTC
CGTGCAGGTGTATTGCCTGAGGGTGCAACAGCAGAGGGCCTCTACGCGAG
TAGGATGCAGGAGCTGGCGAAGAGTGTCGTGGACCTACCAACACCTCCGG
GCATGAAGGAGTCTGTATCCGTTGGCAAAGTTCTGGCTGCCGAGCAGGGG
GATGGAGGCGATGAACTAGAGTTGCACTGGTACATGCCAGCCACAGTACG
CTCCGGCGATCCCCGGTCGAAGTACGGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1112:185653..186180-

>mRNA_D-dichotoma_M_contig1112.964.1 ID=mRNA_D-dichotoma_M_contig1112.964.1|Name=mRNA_D-dichotoma_M_contig1112.964.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=708bp|location=Sequence derived from alignment at D-dichotoma_M_contig1112:185653..186180- (Dictyota dichotoma ODC1387m male)
ATGAAGAGTTGGCCTGATCTGCGGGACATACCCGATCACCCGCGGAAAGT
CATCCCGGACCACACCCTCCATCAGCAACGCGTGTCCATCGAAGCGTCTG
GGCCACGAATTAGGAAATCGTGCCCCAACGTCGATGAAGAGTTGGCCTGA
TCTGCGGGACATACCCGATCACCCGCGGAAAGTCATCCCGGACCACACCC
TCCATCAGCAACGCGTGTCCATCGAAGCGTCTGGGCCACGAATTAGGAAA
TCGTGCCCCAACGTCGGTGTATTGCCTGAGGGTGCAACAGCAGAGGGCCT
CTACGCGAGTAGGATGCAGGAGCTGGCGAAGAGTGTCGTGGACCTACCAA
CACCTCCGGGCATGAAGGAGTCTGTATCCGTTGGCAAAGTTCTGGCTGCC
GAGCAGGGGGATGGAGGCGATGAACTAGAGTTGCACTGGTACATGCCAGC
CACAGTACGCTCCGGCGATCCCCGGTCGAAGTACGGGGTGTATTGCCTGA
GGGTGCAACAGCAGAGGGCCTCTACGCGAGTAGGATGCAGGAGCTGGCGA
AGAGTGTCGTGGACCTACCAACACCTCCGGGCATGAAGGAGTCTGTATCC
GTTGGCAAAGTTCTGGCTGCCGAGCAGGGGGATGGAGGCGATGAACTAGA
GTTGCACTGGTACATGCCAGCCACAGTACGCTCCGGCGATCCCCGGTCGA
AGTACGGG
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