mRNA_D-dichotoma_M_contig1110.955.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1110.955.1
Unique NamemRNA_D-dichotoma_M_contig1110.955.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig1110.955.1 vs. uniprot
Match: A0A6H5L9J7_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9J7_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.450e-40
Identity = 121/263 (46.01%), Postives = 144/263 (54.75%), Query Frame = 1 
Query:    1 SDETAALARWMLQKDPQRRPTLTQALSCQPLRRHMNAFVKNYRPMNMAERQRRNDIKDLESQVASIHEQGGEDPKIPEDLEAGCGTLLPVSSQDGA---TAGVAESRDQGPSEARSEVVQGNTIASCGVNSGRGGGT-EADSSATRVTTRAATAPCDHIVSLPSLDTRETSKGAATISDGLGEVAGDGEAPGCG---------------------------NSTPGRRFGSPKPSKGLRSVMSWVPGNSTTVNQGGPDEGRDG 696
            SDE  ALARWMLQKDP RRPTLTQAL+CQPLRRHM++FVK+YRPMNMAERQRR+DIKDLE+QVASI E GG+DP+IP D+  GCGTL P  +QD     T   A+S+   P EAR   V+G    + GV     GG  E   +A     R  T   + + S  ++            +D    VA                                    N+TPGRRFGSP+ SKGLR+VMSW  G S T   G   EG DG
Sbjct:  333 SDEVTALARWMLQKDPLRRPTLTQALACQPLRRHMSSFVKHYRPMNMAERQRRHDIKDLEAQVASIIEHGGDDPQIPPDVTDGCGTL-PAGTQDETATDTLNRADSKSH-PGEARGGSVEG-VEGAAGVPMETAGGVGEGGFAAVAAAGRTRTVDRNSVRSPSAISITANGVPVGGRADEDENVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATPGRRFGSPQQSKGLRNVMSWATGGSITPPAGRGSEGDDG 592
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1110.955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9J7_9PHAE1.450e-4046.01Protein kinase domain-containing protein n=2 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1110contigD-dichotoma_M_contig1110:129059..132390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue8.9e-29
Seed eggNOG ortholog2880.D7FHW8
KEGG koko:K08857
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0589@1,KOG0589@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size1236
Cds size1206
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1110.955.1prot_D-dichotoma_M_contig1110.955.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1110 129059..132360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927624.9418983-CDS-D-dichotoma_M_contig1110:129058..1301081622927624.9418983-CDS-D-dichotoma_M_contig1110:129058..130108Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1110 129059..130108 -
1690798067.3006713-CDS-D-dichotoma_M_contig1110:129058..1301081690798067.3006713-CDS-D-dichotoma_M_contig1110:129058..130108Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1110 129059..130108 -
1622927624.9602897-CDS-D-dichotoma_M_contig1110:130473..1305871622927624.9602897-CDS-D-dichotoma_M_contig1110:130473..130587Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1110 130474..130587 -
1690798067.3146741-CDS-D-dichotoma_M_contig1110:130473..1305871690798067.3146741-CDS-D-dichotoma_M_contig1110:130473..130587Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1110 130474..130587 -
1622927624.9756563-CDS-D-dichotoma_M_contig1110:132318..1323601622927624.9756563-CDS-D-dichotoma_M_contig1110:132318..132360Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1110 132319..132360 -
1690798067.3258421-CDS-D-dichotoma_M_contig1110:132318..1323601690798067.3258421-CDS-D-dichotoma_M_contig1110:132318..132360Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1110 132319..132360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927624.9929044-UTR-D-dichotoma_M_contig1110:132360..1323901622927624.9929044-UTR-D-dichotoma_M_contig1110:132360..132390Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1110 132361..132390 -
1690798067.3386176-UTR-D-dichotoma_M_contig1110:132360..1323901690798067.3386176-UTR-D-dichotoma_M_contig1110:132360..132390Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1110 132361..132390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1110.955.1

>prot_D-dichotoma_M_contig1110.955.1 ID=prot_D-dichotoma_M_contig1110.955.1|Name=mRNA_D-dichotoma_M_contig1110.955.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=402bp
MLQKDPQRRPTLTQALSCQPLRRHMNAFVKNYRPMNMAERQRRNDIKDLE
SQVASIHEQGGEDPKIPEDLEAGCGTLLPVSSQDGATAGVAESRDQGPSE
ARSEVVQGNTIASCGVNSGRGGGTEADSSATRVTTRAATAPCDHIVSLPS
LDTRETSKGAATISDGLGEVAGDGEAPGCGNSTPGRRFGSPKPSKGLRSV
MSWVPGNSTTVNQGGPDEGRDGSHGNRLRRSGGRGGIDDRGSGGHSVGNT
SNTSNNDENGERDYCCDTESRVDQERHSNDSVLADGTRIVDGVNESIGGE
NADLHIGNKSGGDTDGGGPDIRTIVVGNKKDSPGKVREEVISEGHCPVAD
ENVQDRECPDGGEPDLSTSARKSGSKHRSVSKSTESHELEERRRINDSSE
HD
back to top

mRNA from alignment at D-dichotoma_M_contig1110:129059..132390-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1110.955.1 ID=mRNA_D-dichotoma_M_contig1110.955.1|Name=mRNA_D-dichotoma_M_contig1110.955.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3332bp|location=Sequence derived from alignment at D-dichotoma_M_contig1110:129059..132390- (Dictyota dichotoma ODC1387m male)
AGTGACGAGACGGCGGCTCTGGCGCGTTGGATGCTGCAGAAAGATCCCCA
GCGACGTCCGACCCTGACTCAGGTATACCTTCGTTCATTGCCTTTGACGT
AGTAGTAGGTGTGGGATGATGATGTTGGAATACGGGACGATCCGGGCGTG
ATTTGGGCATATGCTACCATCATACCTTAGCCATCGCGAAGAAGGCCGGG
ACCTGATATTTCCTCGACCAACGCACAACGTTCAGTCTTTCAACGGCGAA
ATGAGTTTTTTGCATAAGAACCCTGAAGCCAAGCTCGAGAAGTTCAAATG
AGACTTTTTACGATGTGCATTTTTTGCATATGCGGTTGCGTCCTTTACTG
CGAGCACTCTTGGCTGCGCTAAGTGAACGTGGGTTATTTCATGTACTTCT
CTTGTTATAACCATCCCTGTTGTTCTTGCGATGCGTTTGTGATAGTTGGA
ATTTTGTGCGTCACTAGACTGGCCCAGCTGGTACTTAAAATCATTTGTTA
GCGACCTGTGAAGAAATCAAAGCAAGTTTCCTCGAGGGACTGGGACCTTC
AAGAACCAAGAGTTGGTCATTGAGCCGGAGAGAAACATTTAACCCGTTCT
TTGAATTTGCCTTTTTTTTTTTACTTATGGTCTTCTAAAGCTGTGTGCAT
CAGCGTCTTGGCCAGCCTAAAACCGTAAGTAGCAGCACCTACTACCCCAT
CGCCACAGGCATTGTTGTGATGCTTATTATTGATGAGATATTGAATGGTT
ATCGACGACAATATCGACATAATATTACTGAATACCGTTGACACAGTATA
CTACAAACTTGGTAAGAGCAGCTTTGGAAATGATATCGATATCTATTATG
CAGTGTACATGCTACTTAAGATATTCAGAACCAACCTCGTCGAAACAAAA
TGTACAGTATTGGTAAATGTCAATAAGGTGAAGATTCGGCTACATGCATA
TCAAACGTGGGTTATTGGCTCCTGGAGATTTATTTCTTATTGTTTCAACG
ATTGTATCTTGGAATGGGTGCATATCGAGTACAAATAAATGTTACTATCA
TTTTTAAATTGTGCTTTAAACCCCTGCGAAGTAAACGACATACGAACGCG
ATGCGCGGAGCGTTGCGGGAAAGCGATGCGTGTCTATTTAGTCCTCGAGG
GTAGACGGATCCCACCGGATCATCGCGCGATGGCCGTCGAACGCCCTTGA
TGAGTTAGAATGGAGAAGTTCAGGCTGAAAGGTTCAATCGACGCTAGATA
CCAAGCAAGGGGACTCCTCGTTCCTCTCGTGTACTTTATGGCCATCATGT
GGACGGCTTTCTACAGGGCAACAAGAGATAAACGGTGAACTAGTGAAGAT
GACAGTTGATCGATCGACCATACCGGATGGCCGAGATCGGCATCGTGGAC
CTTCCATATTGATTTATACGTATGATCACGAACTAGAACAAGATGATTTT
CGTGAACTCGGAATCCTTTACCTTCAAATAGGAATCCACCGTCCAAGGTC
ACATACTGCTGTATGGTCTGAACGTTATGCGCTACACTGCACCAAAACAA
TGTTCTCCAATAGGATGATGAATTAAATTTGTCCTAATATAGAACATATG
TTGGCATGAAACGCTCATGAGTCCACCCTGCTTCATGGCTAATATGATGT
ACAATGCGCACATTGGCCCAAGGGCCTGCCGTTCAGGCATAAAAGCTTTC
CTTTGCGGCCTTACTAACGAAATCTCGGCGTGTAACTCTCCTCATCGCCG
CCAACCTACGTCGCATTTCGTTTGCAATGGCAACTGCGCTTGTGCGCGAT
AAGGCTCTCTCGTGTCAACCGCTTCGTCGACACATGAACGCCTTCGTGAA
GAACTACAGGCCGATGAACATGGCCGAGCGTCAGCGACGTAACGATATCA
AAGACCTCGAGTCTCAGGCGAGTTACCCACCCTCGCAACTGCCAGCAACA
AAGAACGTTCGGCGGGCCCAGGCGTCGCGTCAAGTTGGATCATGCAGTCT
CCGGAATTCGACCACTAGGGCGACGTTGCTCCGAAAATACTCCAGGAGGA
CCAGAGAAAGGATTGATGACATTAAGACACAATTTCACACTTCACCATCA
GGCGACGTCGCGAGAACATCTTGCGTGCCTCGTGATCGAGTGGTCGAGGT
CTCGGACCGTGACGACGGCCAACCGTTACGATTTCGGGCCGTTTCAACGT
CCCCTTCCTGATCTTCAAAAGATCCTCTCGTGTCCTTCAATCCAATCTGA
AGAACCCCTCCGCTTTCTCCTGCGGAGCGCAGGTCGCGTCGATCCATGAG
CAAGGGGGTGAGGACCCAAAGATCCCCGAAGACTTGGAAGCCGGCTGTGG
AACGCTTCTGCCGGTGAGCTCTCAAGACGGAGCCACGGCGGGTGTAGCGG
AATCCCGCGACCAAGGGCCGTCAGAGGCAAGAAGCGAAGTGGTCCAAGGG
AATACGATAGCTTCATGCGGTGTGAATTCGGGACGTGGGGGAGGCACCGA
GGCCGATTCTTCAGCGACTAGAGTCACGACCCGAGCAGCAACCGCGCCGT
GCGACCACATCGTTAGTCTTCCAAGCTTGGATACGCGTGAAACTTCAAAG
GGGGCGGCAACGATAAGCGACGGGCTCGGTGAGGTCGCGGGAGATGGAGA
AGCACCCGGTTGCGGCAATTCAACCCCAGGTCGTCGATTTGGCTCTCCCA
AACCTAGCAAGGGGCTTCGCAGTGTGATGTCTTGGGTACCAGGGAACTCG
ACGACGGTCAACCAGGGGGGTCCAGATGAGGGAAGAGATGGATCTCATGG
AAACCGCCTGAGAAGATCTGGAGGTCGGGGCGGGATCGATGATCGAGGCA
GTGGAGGCCATAGCGTCGGCAACACTAGCAACACCAGCAACAATGATGAA
AACGGTGAGCGGGATTATTGCTGTGACACAGAGAGTAGGGTCGACCAGGA
GCGCCATTCGAATGACTCGGTCCTCGCCGATGGCACTCGCATCGTGGACG
GAGTGAATGAATCGATCGGCGGGGAGAATGCGGATTTACATATCGGTAAC
AAGAGTGGGGGCGACACAGACGGTGGCGGCCCGGATATAAGGACCATTGT
TGTAGGAAACAAAAAGGATAGCCCAGGGAAGGTCAGGGAGGAGGTTATAT
CTGAAGGGCATTGCCCTGTTGCAGATGAAAACGTTCAGGATAGGGAGTGC
CCCGATGGTGGCGAACCGGATTTGAGCACATCAGCCAGGAAAAGCGGGTC
AAAACATCGCTCCGTTTCCAAGTCTACTGAATCCCATGAGCTCGAAGAGC
GACGACGGATCAATGATTCGAGTGAGCACGAC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1110:129059..132390-

>mRNA_D-dichotoma_M_contig1110.955.1 ID=mRNA_D-dichotoma_M_contig1110.955.1|Name=mRNA_D-dichotoma_M_contig1110.955.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2412bp|location=Sequence derived from alignment at D-dichotoma_M_contig1110:129059..132390- (Dictyota dichotoma ODC1387m male)
ATGCTGCAGAAAGATCCCCAGCGACGTCCGACCCTGACTCAGATGCTGCA
GAAAGATCCCCAGCGACGTCCGACCCTGACTCAGGCTCTCTCGTGTCAAC
CGCTTCGTCGACACATGAACGCCTTCGTGAAGAACTACAGGCCGATGAAC
ATGGCCGAGCGTCAGCGACGTAACGATATCAAAGACCTCGAGTCTCAGGC
TCTCTCGTGTCAACCGCTTCGTCGACACATGAACGCCTTCGTGAAGAACT
ACAGGCCGATGAACATGGCCGAGCGTCAGCGACGTAACGATATCAAAGAC
CTCGAGTCTCAGGTCGCGTCGATCCATGAGCAAGGGGGTGAGGACCCAAA
GATCCCCGAAGACTTGGAAGCCGGCTGTGGAACGCTTCTGCCGGTGAGCT
CTCAAGACGGAGCCACGGCGGGTGTAGCGGAATCCCGCGACCAAGGGCCG
TCAGAGGCAAGAAGCGAAGTGGTCCAAGGGAATACGATAGCTTCATGCGG
TGTGAATTCGGGACGTGGGGGAGGCACCGAGGCCGATTCTTCAGCGACTA
GAGTCACGACCCGAGCAGCAACCGCGCCGTGCGACCACATCGTTAGTCTT
CCAAGCTTGGATACGCGTGAAACTTCAAAGGGGGCGGCAACGATAAGCGA
CGGGCTCGGTGAGGTCGCGGGAGATGGAGAAGCACCCGGTTGCGGCAATT
CAACCCCAGGTCGTCGATTTGGCTCTCCCAAACCTAGCAAGGGGCTTCGC
AGTGTGATGTCTTGGGTACCAGGGAACTCGACGACGGTCAACCAGGGGGG
TCCAGATGAGGGAAGAGATGGATCTCATGGAAACCGCCTGAGAAGATCTG
GAGGTCGGGGCGGGATCGATGATCGAGGCAGTGGAGGCCATAGCGTCGGC
AACACTAGCAACACCAGCAACAATGATGAAAACGGTGAGCGGGATTATTG
CTGTGACACAGAGAGTAGGGTCGACCAGGAGCGCCATTCGAATGACTCGG
TCCTCGCCGATGGCACTCGCATCGTGGACGGAGTGAATGAATCGATCGGC
GGGGAGAATGCGGATTTACATATCGGTAACAAGAGTGGGGGCGACACAGA
CGGTGGCGGCCCGGATATAAGGACCATTGTTGTAGGAAACAAAAAGGATA
GCCCAGGGAAGGTCAGGGAGGAGGTTATATCTGAAGGGCATTGCCCTGTT
GCAGATGAAAACGTTCAGGATAGGGAGTGCCCCGATGGTGGCGAACCGGA
TTTGAGCACATCAGCCAGGAAAAGCGGGTCAAAACATCGCTCCGTTTCCA
AGTCTACTGAATCCCATGAGCTCGAAGAGCGACGACGGATCAATGATTCG
AGTGAGCACGACGTCGCGTCGATCCATGAGCAAGGGGGTGAGGACCCAAA
GATCCCCGAAGACTTGGAAGCCGGCTGTGGAACGCTTCTGCCGGTGAGCT
CTCAAGACGGAGCCACGGCGGGTGTAGCGGAATCCCGCGACCAAGGGCCG
TCAGAGGCAAGAAGCGAAGTGGTCCAAGGGAATACGATAGCTTCATGCGG
TGTGAATTCGGGACGTGGGGGAGGCACCGAGGCCGATTCTTCAGCGACTA
GAGTCACGACCCGAGCAGCAACCGCGCCGTGCGACCACATCGTTAGTCTT
CCAAGCTTGGATACGCGTGAAACTTCAAAGGGGGCGGCAACGATAAGCGA
CGGGCTCGGTGAGGTCGCGGGAGATGGAGAAGCACCCGGTTGCGGCAATT
CAACCCCAGGTCGTCGATTTGGCTCTCCCAAACCTAGCAAGGGGCTTCGC
AGTGTGATGTCTTGGGTACCAGGGAACTCGACGACGGTCAACCAGGGGGG
TCCAGATGAGGGAAGAGATGGATCTCATGGAAACCGCCTGAGAAGATCTG
GAGGTCGGGGCGGGATCGATGATCGAGGCAGTGGAGGCCATAGCGTCGGC
AACACTAGCAACACCAGCAACAATGATGAAAACGGTGAGCGGGATTATTG
CTGTGACACAGAGAGTAGGGTCGACCAGGAGCGCCATTCGAATGACTCGG
TCCTCGCCGATGGCACTCGCATCGTGGACGGAGTGAATGAATCGATCGGC
GGGGAGAATGCGGATTTACATATCGGTAACAAGAGTGGGGGCGACACAGA
CGGTGGCGGCCCGGATATAAGGACCATTGTTGTAGGAAACAAAAAGGATA
GCCCAGGGAAGGTCAGGGAGGAGGTTATATCTGAAGGGCATTGCCCTGTT
GCAGATGAAAACGTTCAGGATAGGGAGTGCCCCGATGGTGGCGAACCGGA
TTTGAGCACATCAGCCAGGAAAAGCGGGTCAAAACATCGCTCCGTTTCCA
AGTCTACTGAATCCCATGAGCTCGAAGAGCGACGACGGATCAATGATTCG
AGTGAGCACGAC
back to top