mRNA_D-dichotoma_M_contig1109.942.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1109.942.1
Unique NamemRNA_D-dichotoma_M_contig1109.942.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1109.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1109contigD-dichotoma_M_contig1109:155617..155949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927622.5294333-UTR-D-dichotoma_M_contig1109:155616..1556461622927622.5294333-UTR-D-dichotoma_M_contig1109:155616..155646Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1109 155617..155646 +
1690798065.90426-UTR-D-dichotoma_M_contig1109:155616..1556461690798065.90426-UTR-D-dichotoma_M_contig1109:155616..155646Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1109 155617..155646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927622.5422797-CDS-D-dichotoma_M_contig1109:155646..1559491622927622.5422797-CDS-D-dichotoma_M_contig1109:155646..155949Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 155647..155949 +
1690798065.9124665-CDS-D-dichotoma_M_contig1109:155646..1559491690798065.9124665-CDS-D-dichotoma_M_contig1109:155646..155949Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 155647..155949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1109.942.1prot_D-dichotoma_M_contig1109.942.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1109 155647..155949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1109.942.1

>prot_D-dichotoma_M_contig1109.942.1 ID=prot_D-dichotoma_M_contig1109.942.1|Name=mRNA_D-dichotoma_M_contig1109.942.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=101bp
MSLICCSSKKMPLLHTPFGSTSPCPKENIIFSFTIMLGNCDRGSGEICKK
WGRNGCHPFQRTSSTVAPNYLEKISPVVKTPSNLFPTAVRNFGRTLPCLP
N
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mRNA from alignment at D-dichotoma_M_contig1109:155617..155949+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1109.942.1 ID=mRNA_D-dichotoma_M_contig1109.942.1|Name=mRNA_D-dichotoma_M_contig1109.942.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=333bp|location=Sequence derived from alignment at D-dichotoma_M_contig1109:155617..155949+ (Dictyota dichotoma ODC1387m male)
GCCCAGCGGTACCACAAAGATCCTATTGCTATGTCATTGATATGTTGTTC
GTCCAAGAAAATGCCGTTGCTTCACACACCCTTCGGGTCTACGTCACCTT
GCCCCAAGGAAAATATCATTTTCTCATTCACGATAATGCTCGGCAACTGT
GATCGTGGGAGTGGAGAAATATGTAAGAAGTGGGGAAGGAACGGTTGCCA
CCCCTTCCAAAGGACTTCAAGCACCGTCGCACCCAACTACTTGGAGAAGA
TTTCACCCGTAGTGAAAACTCCGTCAAACCTCTTTCCCACCGCAGTCCGC
AATTTTGGGAGGACGCTTCCCTGTCTCCCAAAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1109:155617..155949+

>mRNA_D-dichotoma_M_contig1109.942.1 ID=mRNA_D-dichotoma_M_contig1109.942.1|Name=mRNA_D-dichotoma_M_contig1109.942.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=606bp|location=Sequence derived from alignment at D-dichotoma_M_contig1109:155617..155949+ (Dictyota dichotoma ODC1387m male)
ATGTCATTGATATGTTGTTCGTCCAAGAAAATGCCGTTGCTTCACACACC
CTTCGGGTCTACGTCACCTTGCCCCAAGGAAAATATCATTTTCTCATTCA
CGATAATGCTCGGCAACTGTGATCGTGGGAGTGGAGAAATATGTAAGAAG
TGGGGAAGGAACGGTTGCCACCCCTTCCAAAGGACTTCAAGCACCGTCGC
ACCCAACTACTTGGAGAAGATTTCACCCGTAGTGAAAACTCCGTCAAACC
TCTTTCCCACCGCAGTCCGCAATTTTGGGAGGACGCTTCCCTGTCTCCCA
AACATGTCATTGATATGTTGTTCGTCCAAGAAAATGCCGTTGCTTCACAC
ACCCTTCGGGTCTACGTCACCTTGCCCCAAGGAAAATATCATTTTCTCAT
TCACGATAATGCTCGGCAACTGTGATCGTGGGAGTGGAGAAATATGTAAG
AAGTGGGGAAGGAACGGTTGCCACCCCTTCCAAAGGACTTCAAGCACCGT
CGCACCCAACTACTTGGAGAAGATTTCACCCGTAGTGAAAACTCCGTCAA
ACCTCTTTCCCACCGCAGTCCGCAATTTTGGGAGGACGCTTCCCTGTCTC
CCAAAC
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