mRNA_D-dichotoma_M_contig1109.940.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1109.940.1
Unique NamemRNA_D-dichotoma_M_contig1109.940.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1109.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1109contigD-dichotoma_M_contig1109:70529..72140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927622.718584-CDS-D-dichotoma_M_contig1109:70528..706531622927622.718584-CDS-D-dichotoma_M_contig1109:70528..70653Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 70529..70653 +
1690798065.9955041-CDS-D-dichotoma_M_contig1109:70528..706531690798065.9955041-CDS-D-dichotoma_M_contig1109:70528..70653Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 70529..70653 +
1622927622.732956-CDS-D-dichotoma_M_contig1109:71912..721381622927622.732956-CDS-D-dichotoma_M_contig1109:71912..72138Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 71913..72138 +
1690798066.0051672-CDS-D-dichotoma_M_contig1109:71912..721381690798066.0051672-CDS-D-dichotoma_M_contig1109:71912..72138Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 71913..72138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1109.940.1prot_D-dichotoma_M_contig1109.940.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1109 70529..72138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1109.940.1

>prot_D-dichotoma_M_contig1109.940.1 ID=prot_D-dichotoma_M_contig1109.940.1|Name=mRNA_D-dichotoma_M_contig1109.940.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=117bp
RYPYLLPNILCALGALFCIPLVILFVPETKMRKGCCGRRPARSIPLTPFL
SPGQKRSDEVDDDDEAAAGVEVASPALSEVRTVDGGEDDHRPPSPPRSVE
ANDCTLYKTPARLGCGS
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mRNA from alignment at D-dichotoma_M_contig1109:70529..72140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1109.940.1 ID=mRNA_D-dichotoma_M_contig1109.940.1|Name=mRNA_D-dichotoma_M_contig1109.940.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1612bp|location=Sequence derived from alignment at D-dichotoma_M_contig1109:70529..72140+ (Dictyota dichotoma ODC1387m male)
AGGTATCCATATCTTCTCCCCAACATTCTGTGTGCTCTGGGTGCGCTTTT
CTGCATTCCCTTGGTCATATTGTTCGTTCCGGAGACCAAGATGAGGAAGG
GCTGCTGTGGAAGGCGTCCAGCGAGGTAGGGTTTAAGCGTTTCAGATACG
AACTGCCTCACTCTCAGATGTTCACATGAAACTTCGTTCCTCAACGCCAT
GCACCCTTCAGTGATCATCCTGCAGGCGTAATCGCACGTTTGGTGTTCTA
GGTTGCCGGCGACTCTTATTTTTCTGATAGTGGTTGGTATTCGATATTCG
ATATTCGCGAGTTGTTCGACCTCAAGAGGTAGGCCGAATGAATCCATGAC
ACTCGTCCTGGAGTGCATAAATCGTCTCCTTAGCACCCTTAATCCGTGCG
TCTCGCATAGAGCACCCCTGACTCGCATTTGTTTTGCCCATCCGTACAGG
CGTCCTGTAGATGAAGTTATGCCGAGCTCTGGTACATTTTGTTTAGCTCC
AGATGAAAAACGCAACGTGGCGGAAAAGCTGCATGGGATTTGTTCTGCCT
GGTCAACTTCGTCCATCAACCTCATTCTGAAGGTCGTCGTACCTCGTTTT
GAACTGAGTTCTCCGAAAAATATGCGAAGCTCGACATGCTCTTCCCGTCA
AGCTGAAAGCGACCTGCCTCTAGGAGTATAACGCGTCTCCACCCTTTTGG
GTTCTAAGACGTCCAGCGGATCCCTCTGCCCCGACCGAGACGGAGCTCAA
CCAATTCATTTTCATCCTAGCCGCAAGTCAATCCAGCCGCCTACGGTCAG
TGTACACGCTGAGGTACGTTTCAACTCCACTTCCAACCTGCGGAGATTGG
GTGCAACGAGAAGCTGCAGCTACTCTCAATTTCTACTATGTTTTCTCAGG
AAGATGTCGACAACAAGCAATTTGCAAGGAGGGAGGACCTCAATCGTCTA
TTTGAATCTTGAACCATGGATTGGGCTTGGAAACCTTCGCGACGGGTACG
ATTCGCGGAAATAAAGACATGAGTGCAGGTTTGACGGCGCCAACAACTTG
CCTGCATCGAGGAGCACCATAAATCACGTCTGGAAGCCGCACATGGTCGC
CATCGTCGTGAGACGATCGCATTTTAGCCCCAAATGCGGAAAGATGATGG
CAGCAGAGAAACCAAAAAGGATTTTCCCCTTCGAACAACATGCTTTGCCC
CACTCAATATTCCGGTGCTCGATCTCCTTCCCTAATCACCTTGGGAAGTC
CTAGTTGCTGCACGTCTTATCTTTGGGGTGACAGTTCCCCTTCCCATTCG
ACCAACTTTCTGATAGCGACGAGGATACCTCCAACTGAGAATAAGCTATT
CCTGTCGCACGCCATGCACGACACGTTGTCTCAGGTCAATCCCCTTGACG
CCGTTCCTTAGCCCTGGACAAAAGCGGAGCGACGAGGTTGATGATGATGA
CGAGGCTGCTGCGGGTGTCGAGGTGGCCTCTCCGGCTTTATCGGAAGTAC
GAACAGTAGACGGCGGGGAGGATGATCATCGCCCTCCAAGCCCTCCCAGA
TCAGTGGAAGCGAACGATTGCACTCTGTACAAGACTCCAGCGCGCCTTGG
GTGCGGTTCAGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1109:70529..72140+

>mRNA_D-dichotoma_M_contig1109.940.1 ID=mRNA_D-dichotoma_M_contig1109.940.1|Name=mRNA_D-dichotoma_M_contig1109.940.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=702bp|location=Sequence derived from alignment at D-dichotoma_M_contig1109:70529..72140+ (Dictyota dichotoma ODC1387m male)
AGGTATCCATATCTTCTCCCCAACATTCTGTGTGCTCTGGGTGCGCTTTT
CTGCATTCCCTTGGTCATATTGTTCGTTCCGGAGACCAAGATGAGGAAGG
GCTGCTGTGGAAGGCGTCCAGCGAGAGGTATCCATATCTTCTCCCCAACA
TTCTGTGTGCTCTGGGTGCGCTTTTCTGCATTCCCTTGGTCATATTGTTC
GTTCCGGAGACCAAGATGAGGAAGGGCTGCTGTGGAAGGCGTCCAGCGAG
GTCAATCCCCTTGACGCCGTTCCTTAGCCCTGGACAAAAGCGGAGCGACG
AGGTTGATGATGATGACGAGGCTGCTGCGGGTGTCGAGGTGGCCTCTCCG
GCTTTATCGGAAGTACGAACAGTAGACGGCGGGGAGGATGATCATCGCCC
TCCAAGCCCTCCCAGATCAGTGGAAGCGAACGATTGCACTCTGTACAAGA
CTCCAGCGCGCCTTGGGTGCGGTTCAGTCAATCCCCTTGACGCCGTTCCT
TAGCCCTGGACAAAAGCGGAGCGACGAGGTTGATGATGATGACGAGGCTG
CTGCGGGTGTCGAGGTGGCCTCTCCGGCTTTATCGGAAGTACGAACAGTA
GACGGCGGGGAGGATGATCATCGCCCTCCAAGCCCTCCCAGATCAGTGGA
AGCGAACGATTGCACTCTGTACAAGACTCCAGCGCGCCTTGGGTGCGGTT
CA
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