mRNA_D-dichotoma_M_contig1105.925.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1105.925.1
Unique NamemRNA_D-dichotoma_M_contig1105.925.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1105.925.1 vs. uniprot
Match: D7FVF3_ECTSI (GBF1, ArfGEF protein of the BIG/GBF subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF3_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.320e-24
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 2 
Query:    2 SLERLVLEVHGIRAECWGEAFASVLLKLPVPLLPPSSKQRSDGDRIQGTSNEEVCLRCCKILSRAFLHHLQALASL 229
            +LERLVLE+HG+ A  WG AF+ VLL+LPVPLLPP  +  + G  +QGT +EEVC+RCC ILSRAFLHHLQAL SL
Sbjct: 1593 ALERLVLELHGVGAPAWGTAFSEVLLQLPVPLLPPHFRPAA-GVVVQGTWSEEVCIRCCSILSRAFLHHLQALTSL 1667
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BLAST of mRNA_D-dichotoma_M_contig1105.925.1 vs. uniprot
Match: A0A6H5JJL6_9PHAE (SEC7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.320e-24
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 2 
Query:    2 SLERLVLEVHGIRAECWGEAFASVLLKLPVPLLPPSSKQRSDGDRIQGTSNEEVCLRCCKILSRAFLHHLQALASL 229
            +LERLVLE+HG+ A  WG AF+ VLL+LPVPLLPP  +  + G  +QGT +EEVC+RCC ILSRAFLHHLQAL SL
Sbjct: 1625 ALERLVLELHGVGAPAWGTAFSEVLLQLPVPLLPPHFRPAA-GIVVQGTWSEEVCIRCCSILSRAFLHHLQALTSL 1699
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1105.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVF3_ECTSI1.320e-2467.11GBF1, ArfGEF protein of the BIG/GBF subfamily n=1 ... [more]
A0A6H5JJL6_9PHAE1.320e-2467.11SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1105contigD-dichotoma_M_contig1105:202196..207645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size232
Cds size231
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1105.925.1prot_D-dichotoma_M_contig1105.925.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1105 202196..207645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.8861487-CDS-D-dichotoma_M_contig1105:202195..2022661622927617.8861487-CDS-D-dichotoma_M_contig1105:202195..202266Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 202196..202266 -
1690798064.108812-CDS-D-dichotoma_M_contig1105:202195..2022661690798064.108812-CDS-D-dichotoma_M_contig1105:202195..202266Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 202196..202266 -
1622927617.8972332-CDS-D-dichotoma_M_contig1105:206575..2067101622927617.8972332-CDS-D-dichotoma_M_contig1105:206575..206710Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 206576..206710 -
1690798064.1218557-CDS-D-dichotoma_M_contig1105:206575..2067101690798064.1218557-CDS-D-dichotoma_M_contig1105:206575..206710Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 206576..206710 -
1622927617.907247-CDS-D-dichotoma_M_contig1105:207620..2076451622927617.907247-CDS-D-dichotoma_M_contig1105:207620..207645Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 207621..207645 -
1690798064.1362045-CDS-D-dichotoma_M_contig1105:207620..2076451690798064.1362045-CDS-D-dichotoma_M_contig1105:207620..207645Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 207621..207645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1105.925.1

>prot_D-dichotoma_M_contig1105.925.1 ID=prot_D-dichotoma_M_contig1105.925.1|Name=mRNA_D-dichotoma_M_contig1105.925.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=77bp
VSRASRAGGARNTSRVLGGSLRLRSSQTPCSPAPTEFEAAVRRGSHPGDI
ERGGVLEVLQDPVSSLLASLASFGEPP
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mRNA from alignment at D-dichotoma_M_contig1105:202196..207645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1105.925.1 ID=mRNA_D-dichotoma_M_contig1105.925.1|Name=mRNA_D-dichotoma_M_contig1105.925.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=5450bp|location=Sequence derived from alignment at D-dichotoma_M_contig1105:202196..207645- (Dictyota dichotoma ODC1387m male)
GTCTCTCGAGCGTCTCGTGCTGGAGGTACGCGAGACCTGTTGGGGTTTCC
TGTGAATCCTCCATCGATGAAGCTTTTTCGATGGTTTTCGCGACGATTGT
GGATGGTTACGGCCACTATGGTCGTTGCAGCAGTTGCGGTCGTTCCAGTC
GTTCCGGTCATTACGGTCGTTACCAGTCGTTACGGCCGTTACAGCCGTTA
CAGCTTACACGACGGATACAACGATTGCGTGTGTCACTCTATCCCACACT
CTTCATGTAGTTCATGCTAGTGTTCGTCCCTCCCACACGGAGGGAGACGT
TTTTAGGCGGCTACAGTGCTATCAATGATAAAAATCGGGCTCTTTTCACG
GCTACATACAAAATTCAAGTATAAAAATTGAAGAGCCCGATTGTTATCAT
TGATACAGTAGTGCACAAGGGTGTAACGGAGTACGTGAGGACAAAAACAG
TCCAAACCTGGCCCCACAACTTTTCTCACGAATATGGTCGGATCTAATTT
CATGAAAACATAAAGCAGTTCAAATCTGGCCTGAAAAGTTTGGTAACATT
TTTGGGGGGCCAGAATTGGACTGTTCTTTCCTCACGTATTCCGTTACACC
CGTGAGCACTACTGTAGAACTGTAGGTTGCGGACGGACATCCCAAGGGCT
TCAGCCTTGTGACGCCCCGTATGTTCCGGCTGCAATCATGACCACAGTGC
AAGGTCGGTCGGAAGACGAAACGTGAAGCTTTCGATGTTTTGATTGGTGG
AAAAGATGGCTCTACTTCGTGGGGTCCTCCAGGAAGAGAGAAGAGCATTG
GAAGGGGATCTCCGTCGTCGTACGCGCTGCAGCAGCAGTCACCGACGGAA
ACCTCGCATTTTTTCGCGGTGGATGCTGGAGAATAGTCCTTGGCGCTCAA
GGCATTATGGGCGTTGGCGTGTGTTTTGGTCGCAGGTGCACGGAATACGA
GCCGAGTGCTGGGGGGAAGCCTTCGCCTCCGTTCTTCTCAAACTCCCTGT
TCCCCTGCTCCCACCGAGTTCGAAGCAGCGGTCCGACGGGGATCGCATCC
AGGGGACATCGAACGAGGAGGTGAGGGAGTGCAAGGGAGTTCACAAAACG
GCGGTGATGAGGCGTTTTAGATGGTCATGGATGTTGATGACGGGGGTTGG
GGAAGGGGGGGGACTTGAGTGAGACGTGGCGTGAAGAAGCGAAAATTGGC
TCTCCGAAGAAATTTCGGGTAAAATTCCGACTCCTTTGCGGTTAGATGGG
CGGGTTCCACGTGATGGCTATCTTTTGGTTCGTGGCTTCTGATGATCGCT
GTTCGAGAAATCGTGAGAAAAAATGGAGGGAAAACGGGAAAATATATGAA
AAAGATGGGGAAAGATGCAGGCGGAGCAGTAGATGGAAAAAATGATGGAA
AAATAGATCGAATATAGATGAAAGAATGGATTGGAAATTATATCGGAAAT
AGATGGGAAAATATACGGGAAAGTCACGGGAAAATGGGAAAGATAGGAGA
GATAGATAGGAATATCCTGGTCGAAGTTTGGGAGCGTATGGTATGGATTT
TTCTAACCTCTGTGTCACCTGGGATTCCGAGAGTTCGTGTTGGTTAGGCC
CGCACATCTTGACCCTGATTCGGGGTGTCAGGAGGGATTTCATGCCTTGA
AAATGTCGGATCGCGGAAGATGGAAAGTCGTGCAAGTTCGAGCGTAGCTT
CGGTCGTTTATTTCAATCAGGCCGTACAGCACTTCAAATCGTTACAAAAT
GGATCTTTGACGCAATATACTTGGATTCAGTATGTAAACCGTCGAATCTC
CGTTTGCTGCGATTCGATGTGAAACCTTGTTGGCGTGTACGGGAATCGCA
AACCGTATCATAATGGTTCTTCGTTGTTAATTACTTGGATTTAAAGACCA
TTCCATCGAAGATCCTAAACGGTACGATTTGAACCACTGTACTGTGACGG
TTCCAGAATACAGCTCCGTGTCGTGGCAGAAGTATCACGGCTGCTCCGGG
GAAATGGCATGGATTTCGAAAACTACGGGCGACAGAAAAGCGAATGTGAA
AGCAGGGGGATGTTCTAATGGGCTATGGCGATATGTTATCTATCCCTAAG
TTCGTTTGGTTAGTCGAGCTCATGGCGTGCTTGTCCATTTCTGATATCGG
TGAAGGCATTGTGCCCTCCCGAGAAGCAAAGGTGGTCGCTCTCAGCATAC
CACGGTAAATGATAATGTTTCAGTTTAGCTTTTGAATCATGGTAAGATGA
ATATATATATATATATATATGTATATATATAAAGGGGTTCAAATCGTAAC
ATTTTGGATCTTCGATTGGCTTCCCTTTAAATCCAAGTAAATAAGATTGA
GAACGATAAGCTTACGGTCTGCGAGTGCCGCACACGCCGACGAGATATCA
CATGGAATCGCAGCAAACGAAAATTCGGCGGTTTACGTACTGAATCGTAG
TAAATTGCATTAAAGATCCGTTCGGTTTCGATTTAAAGTACTGTATATAT
GTGGATCTTAGGGTATGTTGGTAGTACAGTATAGTAGGGGGTCTGTTCGA
TGTACAGATCCGTCCCTCCGATGAATTGCCGGGCACCACTGTGATGTACG
TGGACCCCCCCCCCCCGCACTCGTCCCCTCTTTGATTGTTTCCGAAACCC
CGATTCTTCTCAAAAGGTTTCTTTTGTGACTAAAGAAGGGAGAGCTACCA
GTTGGGCCAGTCAAGGAAGGAAGATTATCCCAAATGAGCAAAAGTAGCGG
GCTGGGATGAACCCCAAGGCAATCCCTCGGAGGTAGCAAGGAAAACAGTC
AGTGACCCAGTATAGCATGGTACCCGTTACCGCGCTATAGAGGGCAACCG
CGCCACTCTGACCGGATCGCAGTCAAGGTTTCATACTCCGGATGGGTGAA
TCTACTACTCTAATTCCAGTATAAAGTCAACGGGTAGTCGAGTTGAATCA
ATTTGTTCATTGGGGATTTGGAGGGATCACGAGCGGTATTCTGTTTGGGA
CCAGCGTCAGTTCTCACGTTCTCGAGGTCGGGCTACCGTGATGAAATAGA
TGAATGATCTTAATCCAGTTGAGTTGATCGAATCAGGCATTCTTCAAATT
CTAGAGTGAATAAATTCATCCGATGTACGCAAGGTTTCCATCCATGGATA
CGGGAAGTAAGGCCTCCCTCCACCTCCAACTCTGCCACTCTCCAGGGAGC
TCTGTAGGTTCATCGACTCCTGAAACTGCTGGTGCAATTGAGCGGAGGAA
ATTTTCATTTCTCTCATCATGTGGATCACCCTACGTCTCATTCAAACTCG
TTATTGTGCGACTGTGTTTCTCGTTATTGTGCGACTGTGGTTACCGTGCT
ACAAAGGGTCTTCGCGTTACATAGGGCCGTCGACTGTACGTGCACAAGTC
CTGCGCATGGTGGTGGTTTCGAATTTTGCGTACGTCGGACCATACTTCTC
GGAAGGATAATCGGAGCCTGAAGAATTTCAAGGGTTGAGTTTATTGGACA
AAACATGGGGTGTCCTGGTCGAGAAGATTGGGTTTCGATTGGATGGGTGT
CCTGTCGTCGCGCGGTAGCTGGCCGCTGGCGGCATCAATAATTCGATGTG
TTTCTGTGCGGTGGGGATAACGGCTTGCCTGCGCTTGATCTCTTCCGCGC
GATCCTTTTCTCGTCGTGTAGCTCCCAGCTCCCACCCCAGCCGACCGACG
GCTTGGATTCTTGCCGAACGGGTTAACAAACGGCGAAGGAGAGTAGATGC
AATTGGGTTCGTGTTCGATGCAAGCGGTTTGTCAAGAATGGTGACTTGGT
TGCCACTGGACGTAACGTTGTATCGCTTGACGCTTGAAAGTAGTTGCGCA
ATGGGTGGAAATTGGGCCGCTTCATGGTATTTATTATCTTGGAAGGCGTT
TCGACGTGAAGGACGAGTTTCGTTGGATGAAAATCCTAGCCGCAGTCCTT
GAAACGGTAACTCTTTTTTTTTCGATTCCATTTTTTTTGTAACGAATGCC
GTGGAACCTTGTGTTCGGAGACCACCTCCAAGTGACTACAGCACTTCAAG
CCATAACATTTTGGATCTCGCAGGAACTTACTTGGATTCAATGTACTAGC
AACCAAAGATCCATCGTGTTGAGATTTGAAGTACTGCGGTGGGATGGTTC
TTCGGGTATGCAACTCGTAGCAGGATTCGTTTTTTGATTGGGTGTATACT
TAATTCAAGTGAATAGATAGCTTTCATTTCCACACCGTTATTATTTGGAT
CACTGTACTAATGAATGGCTTATTTTCAGATGATTTGAACAAGTAGACCA
TCTATTGTATCTATTCAGCAAAACATGCAAGGAATGGATTTGAAGCAAGG
AGTTGATATTTCAAGGACCTATCTAGAGGGGAGTACCTTGAAGATCGTTT
CCGAGTTAGAGTGGCTACGCCGCTGTTCTACTCTAAATCCTAGAGTACCT
CAAGTCATAATACAATATCTCTATAAACCCCATTTTCTTGGGATTCGTAT
GTTTCCAATCGAAGAGCCATTTTGTGACGGTTCGGAGGAGTCCAGTCGAG
GTGGTACCTCTTTAGGCTCTTCAAGGGTTCCCACGATAGTACCGTCGTCC
TAGTTTAGTTCGGGACCTCTGTCGCACTACAACGAGAAATGCTGCCATCC
CCCATCCCCTGGCTTTGGATGATGATATGTAGGGTGATTGATATACATAC
TGGAAATGAAATAAAACGTTCATCGGCGCCGTAAGGCCATCAGTTTCGTG
AGCAGGCGAGCCTACAGAGCTCCCCGAGGGTGGCAGTTTTTGGGTGTGGG
AGGCGTGGGTGGTTATTTGATGCATTCATGGATGAACGTGTCCATCTCGG
TCCGTCCGCTTTAGTTCCACTCCCCGCATTGATTCGGGTACGGCGGGAGA
ACTAAGTATCACGGTGGGAAGTAATAAATGGTATCAAATTTACGGGAGAA
ATCTACCCATATCTCAGCGAATACGAACGCGATTTCACTCATTCTTCGTG
CATCATCGTGTTCTCTAGGTGGTTACCACTAATCGAGTAGAAATTGATGG
AGATTGAACCAATTTGGTGTCGTTTATTATGTCCCACCGTGATACTTGTG
TACCTGTTTTGGGCTGTACTACTACAGAAGATGCCTCTTTTGGGCTGATG
CGAAAGTCATCCATATGGAGGGGGCAATGCACGTACAGTCGTTGTAAGTA
TTGCAGTATGAAGATCCGACCAGCTGCATGTTAAGTGCCACTAAGATGGA
CCTGAATGGACCCTTTCATTTTTGAATGTTTCAAGTACTGCGTTAATGGT
TACGTCTTTTTGCCCATGGCCGCAGCGAGCGCGTCTGAGAGTGTCCTCGC
CCTGGAAACGATGATTCCGTCGCCTCCAGGTGTGCTTGAGGTGCTGCAAG
ATCCTGTCTCGAGCCTTCTTGCATCACTTGCAAGCTTTGGCGAGCCTCCC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1105:202196..207645-

>mRNA_D-dichotoma_M_contig1105.925.1 ID=mRNA_D-dichotoma_M_contig1105.925.1|Name=mRNA_D-dichotoma_M_contig1105.925.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=462bp|location=Sequence derived from alignment at D-dichotoma_M_contig1105:202196..207645- (Dictyota dichotoma ODC1387m male)
GTCTCTCGAGCGTCTCGTGCTGGAGGTCTCTCGAGCGTCTCGTGCTGGAG
GTGCACGGAATACGAGCCGAGTGCTGGGGGGAAGCCTTCGCCTCCGTTCT
TCTCAAACTCCCTGTTCCCCTGCTCCCACCGAGTTCGAAGCAGCGGTCCG
ACGGGGATCGCATCCAGGGGACATCGAACGAGGAGGTGCACGGAATACGA
GCCGAGTGCTGGGGGGAAGCCTTCGCCTCCGTTCTTCTCAAACTCCCTGT
TCCCCTGCTCCCACCGAGTTCGAAGCAGCGGTCCGACGGGGATCGCATCC
AGGGGACATCGAACGAGGAGGTGTGCTTGAGGTGCTGCAAGATCCTGTCT
CGAGCCTTCTTGCATCACTTGCAAGCTTTGGCGAGCCTCCCGTGTGCTTG
AGGTGCTGCAAGATCCTGTCTCGAGCCTTCTTGCATCACTTGCAAGCTTT
GGCGAGCCTCCC
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