mRNA_D-dichotoma_M_contig1101.901.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1101.901.1
Unique NamemRNA_D-dichotoma_M_contig1101.901.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1101.901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1101contigD-dichotoma_M_contig1101:138021..139290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size553
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1101.901.1prot_D-dichotoma_M_contig1101.901.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1101 138021..139044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927615.17837-CDS-D-dichotoma_M_contig1101:138020..1381061622927615.17837-CDS-D-dichotoma_M_contig1101:138020..138106Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 138021..138106 -
1690798062.5800629-CDS-D-dichotoma_M_contig1101:138020..1381061690798062.5800629-CDS-D-dichotoma_M_contig1101:138020..138106Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 138021..138106 -
1622927615.1966531-CDS-D-dichotoma_M_contig1101:138824..1390441622927615.1966531-CDS-D-dichotoma_M_contig1101:138824..139044Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 138825..139044 -
1690798062.5929463-CDS-D-dichotoma_M_contig1101:138824..1390441690798062.5929463-CDS-D-dichotoma_M_contig1101:138824..139044Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 138825..139044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927615.212904-UTR-D-dichotoma_M_contig1101:139044..1392901622927615.212904-UTR-D-dichotoma_M_contig1101:139044..139290Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1101 139045..139290 -
1690798062.6058433-UTR-D-dichotoma_M_contig1101:139044..1392901690798062.6058433-UTR-D-dichotoma_M_contig1101:139044..139290Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1101 139045..139290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1101.901.1

>prot_D-dichotoma_M_contig1101.901.1 ID=prot_D-dichotoma_M_contig1101.901.1|Name=mRNA_D-dichotoma_M_contig1101.901.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=102bp
MERSVGSSAGCQALCAGNRQHDALSTGEEKEVEDYVTGDASPAPVREELS
EGLDGPTNVPATPAADVNELEVAASGDPAAVVSRSTGPMKEGLGVPMPPR
GG
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mRNA from alignment at D-dichotoma_M_contig1101:138021..139290-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1101.901.1 ID=mRNA_D-dichotoma_M_contig1101.901.1|Name=mRNA_D-dichotoma_M_contig1101.901.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1270bp|location=Sequence derived from alignment at D-dichotoma_M_contig1101:138021..139290- (Dictyota dichotoma ODC1387m male)
CTACAGAACCTCGAACACGCCGTCTGAAAGTGAGGAAGTGTGGGTGGTAG
CTTTTCCACAGCCAAGTAGGGCTCGGGGCTCGGCACCCTTCCGGATGATC
TTGGCTCAGCCGTGGGCTGAGTATCCTGGTTTATGGGGACGTGCGCTCGA
CGCAGGGGAAAGAAAAAATAACCCCAAAGAAATTAGTCGCGAGCAAAAAG
CCTGGAGCAGCGGCATCAGGACAAACGGACACGATCATAGCGGGCAATGG
AGCGAAGCGTAGGATCATCAGCAGGATGTCAAGCTTTATGCGCGGGCAAC
CGCCAACATGATGCTTTGTCTACTGGCGAAGAAAAGGAGGTTGAAGATTA
TGTGACAGGTGATGCTTCGCCAGCACCGGTGCGTGAGGAACTCTCCGAAG
GCCTCGACGGTCCAACGAATGTGCCAGCAACTCCTGCTGCCGATGTGAAT
GAGCTCGAAGTTGCGGGTGAGTCCCGGCAAAGTTTCCTGAAGCTATCGTT
TGGATGCAAAACATATTTTTTCATAGAACACGCATCATTTTTCCCTGAGA
TGTTGTCGTCGGTATGTGGTTGGGATGTCAAGCATGCTCAGAGCGTCACG
TTGGGTCGGTTGGCGCTCCAGTTTCGAATTGGACGAAGCAACACTATTTT
TTTTGAAATATAACAACGCGCTTAGCTTTTCTAGGCGCCTTCCCAACAGG
GAACATGCACGTTTCTTCGTGCTTCACTAGTCTTTGATAGTTTTCCCTCT
GCCCATGTTCAACACACCTGGGGCTCGCGATCATAATTTCTTCCACCCAA
GAGCTTTACAGCGGAGTTGAGTCACGTCGACCTCTCCGTCCGTTCGCAGC
ATTTTTTGGTTGAAAATCGGTGCAGCTTCTTTTGGTCCCTATCCGGAGGG
TAGGTCTGTGTCGCCTTCTGATTTCCACCTTTTGGAGTCCTCATCGAATA
CGATGCTCCAAGAGACCCGTGGACCCCCTTCCCGACGGGACCTGTGATTC
TCTCCCTCCGATACCCCGACTCCTGCGCGAAGTACCCCGCGGTGTACCCC
CGGTGGCGAATTCCTGACGAGCAAACCGTCTAGAAACCCAGATGAGGAGC
GCCCACCTAAACAATCCTAGTTTTCACGTTTCTCCCCTATATCGATTTCC
CGAACTGGTTCGACATCCGCGCTGATGATGGCAGCGTCTGGCGACCCGGC
AGCCGTTGTATCACGTTCGACTGGGCCAATGAAAGAGGGCCTCGGCGTAC
CCATGCCACCGAGAGGCGGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1101:138021..139290-

>mRNA_D-dichotoma_M_contig1101.901.1 ID=mRNA_D-dichotoma_M_contig1101.901.1|Name=mRNA_D-dichotoma_M_contig1101.901.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=612bp|location=Sequence derived from alignment at D-dichotoma_M_contig1101:138021..139290- (Dictyota dichotoma ODC1387m male)
ATGGAGCGAAGCGTAGGATCATCAGCAGGATGTCAAGCTTTATGCGCGGG
CAACCGCCAACATGATGCTTTGTCTACTGGCGAAGAAAAGGAGGTTGAAG
ATTATGTGACAGGTGATGCTTCGCCAGCACCGGTGCGTGAGGAACTCTCC
GAAGGCCTCGACGGTCCAACGAATGTGCCAGCAACTCCTGCTGCCGATGT
GAATGAGCTCGAAGTTGCGGATGGAGCGAAGCGTAGGATCATCAGCAGGA
TGTCAAGCTTTATGCGCGGGCAACCGCCAACATGATGCTTTGTCTACTGG
CGAAGAAAAGGAGGTTGAAGATTATGTGACAGGTGATGCTTCGCCAGCAC
CGGTGCGTGAGGAACTCTCCGAAGGCCTCGACGGTCCAACGAATGTGCCA
GCAACTCCTGCTGCCGATGTGAATGAGCTCGAAGTTGCGGCGTCTGGCGA
CCCGGCAGCCGTTGTATCACGTTCGACTGGGCCAATGAAAGAGGGCCTCG
GCGTACCCATGCCACCGAGAGGCGGGCGTCTGGCGACCCGGCAGCCGTTG
TATCACGTTCGACTGGGCCAATGAAAGAGGGCCTCGGCGTACCCATGCCA
CCGAGAGGCGGG
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