mRNA_D-dichotoma_M_contig1101.900.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1101.900.1
Unique NamemRNA_D-dichotoma_M_contig1101.900.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1101.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1101contigD-dichotoma_M_contig1101:135553..137975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size890
Cds size888
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927615.0815506-CDS-D-dichotoma_M_contig1101:135554..1362521622927615.0815506-CDS-D-dichotoma_M_contig1101:135554..136252Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 135555..136252 -
1690798062.5616827-CDS-D-dichotoma_M_contig1101:135554..1362521690798062.5616827-CDS-D-dichotoma_M_contig1101:135554..136252Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 135555..136252 -
1622927615.1086056-CDS-D-dichotoma_M_contig1101:137785..1379751622927615.1086056-CDS-D-dichotoma_M_contig1101:137785..137975Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 137786..137975 -
1690798062.5711448-CDS-D-dichotoma_M_contig1101:137785..1379751690798062.5711448-CDS-D-dichotoma_M_contig1101:137785..137975Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 137786..137975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1101.900.1prot_D-dichotoma_M_contig1101.900.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1101 135555..137975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1101.900.1

>prot_D-dichotoma_M_contig1101.900.1 ID=prot_D-dichotoma_M_contig1101.900.1|Name=mRNA_D-dichotoma_M_contig1101.900.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=296bp
VSLVGSDRAGQVLLRTSSSGPEQRDRSRMLGALSSAGANGVRGFGRAPAR
TDGVGSSRSRLSAASHLGASVSSGDRLAMALTTDGPTNDRLSLSGPGERP
SSHRPQLERLSSLGAMLLSNDGLDGNSMTMAVSGGLPDGNADVGRSGLSE
GQPSTMDMDEGGAPEGGETGPPSAPPPPRPPPRASLTPPGDRPSVNPDPS
LSLSAASVQAARGGGPGDVAMSLRSTPGMEHDGDGSRLSLMNRGPGASSS
GASSGVSMASRGSPRDLHWGERDLTSQSAQFSAVNESGGRCGVMEG
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mRNA from alignment at D-dichotoma_M_contig1101:135553..137975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1101.900.1 ID=mRNA_D-dichotoma_M_contig1101.900.1|Name=mRNA_D-dichotoma_M_contig1101.900.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2423bp|location=Sequence derived from alignment at D-dichotoma_M_contig1101:135553..137975- (Dictyota dichotoma ODC1387m male)
GTTTCTCTCGTGGGGTCGGATAGGGCAGGCCAAGTGTTGCTGCGAACGTC
GTCATCTGGCCCCGAGCAGAGGGACAGGTCTCGCATGCTCGGCGCGCTGT
CGTCCGCCGGTGCGAACGGGGTGCGAGGCTTCGGGAGAGCGCCGGCGCGG
ACCGATGGCGTGGGCAGTAGCCGTTCCCGGCTCTCCGCGGGTAAGTTTCT
CACGGGGTCGCGACGATGCTTTGCTCCTGAGATGGACCCCTCATGTGTCT
CCCTCCTGTGGTACGCGGTTTGATTTTTTTTTTGACCGTGTGAGGTGAAG
TGTACTGTAACAGCTTTTCCTGACCTATGAGGACACACGAGAGGTGAGAA
AACTCGCTTGGGTCACTTTCTTCACGGTAGAGGGCGAGTGATCGTCCCCG
TTAGCTCTCGGGAGTTGTCACGTGAGAGAACAGAACCCTATTGCTCTCTG
TTAAGAGCTTTGCTTCTTCTAGAGTAGGGCTTGATGTGATGCGCGTCGCT
CCATGCTTTCAAACAAGCCTTCTCTGGCATGCACCAGGAACAGGATTTTA
TCCAACTTGGTCCCGTTGGAGCAATCTTGTACAATTTTCGTGGTATGGTA
GAGATTGCTGGAAAATCGAACGACCCAGTTGCCTGAGACCTTGGGGAATT
GTCCGCGCGAGACAGCTTGGGAGAGCACGTGATGCTGCGCTCACCTCGCG
TGGGAGAGACTCATCTCGCGGGTAAGCCATGATATCTCGGCTGAACGTTG
CAGCAGAACATGGTCGTTGTGCTTTTGTCCCGGCCGTTACTTTTTTGTGT
CTCCCATGGTTCTGTATGCTTTTTCTTGGATTTTGTTAGGGGGGCGTAAC
GGTCGTATGTGGTAGGGCATGAGACTTTTCGAGGTGAGAGTATTTCAAGT
CGCGACAGCGCTTCCCTCAAGAAGGGGCAGTCAGGACCTCTAGGCACGTC
CACGTTACTTAAAATCGTGACGCAGAACGGCTTCGGTTGACTGCATACGA
AGTCGAGGTCAAAGGGTTTTAGAGCCGTTTTGTTCAAGGGTGGCTCAATA
GCCAGACTATGGAACCCCTCTCTACCCCTCGATCCCCCTCAGGGTCTGTT
TTTCTACATTGCAATTGCAGATGGCACCTATGGCGGTAAACCTTGTCCTG
TACATCTAGGTGATGTCTGTATCCCTTATCGTCTTCTGGTGTTGTCTTAC
AATATGAGGTGCTTCAAACCCAGGTAACCTATAACCAAGTAGTCGGGTAA
GAGTATTCTCGACTAAAGTATTTGATGTATCGATGCTATAGTCGGGTGCA
CATATTTTGAGTGCTTTTGGGTCTCTCATTGTTTATAGAAGTAAATCAGG
ACGCTACTGAGTGATTGCGGGCCAATCCCCCCTGAACCGCCCCCCCCCTC
CCGACGGCCTTTTGATACCTGGAGCAGGCGTTTTCCATGCTATTTTTATT
GAGCTATCCCTGATTTTGTTGCTCTTCGAAATACTCTAGGGCGATGGTAC
ATCTTTTCCTGTGGTGTCTCTGACTCGTCCTCGAGTCCAAGGTGATGAGA
TGGTTCCCCTGGCAGTAAACACATTCCTGCTCTCTGATGCCCGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTACGCCCATGTGTGCTTTTCTCTACGAATGCCCTTGCATTACCTAC
CGGAACCGACCTTCTCGAAGCAGCGTCTCACCTTGGCGCTTCCGTTTCCT
CCGGGGACCGGTTGGCCATGGCTCTAACGACAGACGGGCCGACGAATGAC
CGATTATCTTTGTCCGGCCCCGGGGAGCGTCCTTCCTCACATCGACCCCA
ATTGGAACGGTTGTCCTCGCTTGGAGCTATGTTGCTTTCCAATGATGGGC
TGGATGGGAACAGCATGACGATGGCCGTATCGGGGGGCCTGCCCGACGGC
AACGCGGACGTGGGGAGGTCGGGATTGTCTGAGGGACAGCCGTCGACGAT
GGATATGGATGAAGGTGGTGCACCAGAGGGCGGTGAGACGGGGCCGCCGA
GTGCCCCACCTCCACCCCGACCCCCGCCACGGGCCTCTCTGACCCCTCCC
GGGGATCGCCCTTCAGTAAACCCCGATCCGTCGTTATCGTTGTCGGCGGC
ATCAGTGCAAGCAGCACGGGGGGGCGGGCCCGGGGATGTTGCCATGTCCC
TCCGGAGCACGCCTGGGATGGAGCACGACGGAGACGGGTCGCGCCTGTCG
CTGATGAATCGCGGTCCGGGAGCCTCCTCATCAGGAGCTTCTTCGGGAGT
CTCCATGGCATCTCGCGGATCTCCCCGGGACTTGCACTGGGGTGAACGTG
ACCTAACAAGCCAGTCGGCGCAGTTCTCGGCAGTGAACGAAAGCGGCGGA
AGGTGTGGGGTGATGGAAGGCGT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1101:135553..137975-

>mRNA_D-dichotoma_M_contig1101.900.1 ID=mRNA_D-dichotoma_M_contig1101.900.1|Name=mRNA_D-dichotoma_M_contig1101.900.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1776bp|location=Sequence derived from alignment at D-dichotoma_M_contig1101:135553..137975- (Dictyota dichotoma ODC1387m male)
GTTTCTCTCGTGGGGTCGGATAGGGCAGGCCAAGTGTTGCTGCGAACGTC
GTCATCTGGCCCCGAGCAGAGGGACAGGTCTCGCATGCTCGGCGCGCTGT
CGTCCGCCGGTGCGAACGGGGTGCGAGGCTTCGGGAGAGCGCCGGCGCGG
ACCGATGGCGTGGGCAGTAGCCGTTCCCGGCTCTCCGCGGGTTTCTCTCG
TGGGGTCGGATAGGGCAGGCCAAGTGTTGCTGCGAACGTCGTCATCTGGC
CCCGAGCAGAGGGACAGGTCTCGCATGCTCGGCGCGCTGTCGTCCGCCGG
TGCGAACGGGGTGCGAGGCTTCGGGAGAGCGCCGGCGCGGACCGATGGCG
TGGGCAGTAGCCGTTCCCGGCTCTCCGCGGCGTCTCACCTTGGCGCTTCC
GTTTCCTCCGGGGACCGGTTGGCCATGGCTCTAACGACAGACGGGCCGAC
GAATGACCGATTATCTTTGTCCGGCCCCGGGGAGCGTCCTTCCTCACATC
GACCCCAATTGGAACGGTTGTCCTCGCTTGGAGCTATGTTGCTTTCCAAT
GATGGGCTGGATGGGAACAGCATGACGATGGCCGTATCGGGGGGCCTGCC
CGACGGCAACGCGGACGTGGGGAGGTCGGGATTGTCTGAGGGACAGCCGT
CGACGATGGATATGGATGAAGGTGGTGCACCAGAGGGCGGTGAGACGGGG
CCGCCGAGTGCCCCACCTCCACCCCGACCCCCGCCACGGGCCTCTCTGAC
CCCTCCCGGGGATCGCCCTTCAGTAAACCCCGATCCGTCGTTATCGTTGT
CGGCGGCATCAGTGCAAGCAGCACGGGGGGGCGGGCCCGGGGATGTTGCC
ATGTCCCTCCGGAGCACGCCTGGGATGGAGCACGACGGAGACGGGTCGCG
CCTGTCGCTGATGAATCGCGGTCCGGGAGCCTCCTCATCAGGAGCTTCTT
CGGGAGTCTCCATGGCATCTCGCGGATCTCCCCGGGACTTGCACTGGGGT
GAACGTGACCTAACAAGCCAGTCGGCGCAGTTCTCGGCAGTGAACGAAAG
CGGCGGAAGGTGTGGGGTGATGGAAGGCCGTCTCACCTTGGCGCTTCCGT
TTCCTCCGGGGACCGGTTGGCCATGGCTCTAACGACAGACGGGCCGACGA
ATGACCGATTATCTTTGTCCGGCCCCGGGGAGCGTCCTTCCTCACATCGA
CCCCAATTGGAACGGTTGTCCTCGCTTGGAGCTATGTTGCTTTCCAATGA
TGGGCTGGATGGGAACAGCATGACGATGGCCGTATCGGGGGGCCTGCCCG
ACGGCAACGCGGACGTGGGGAGGTCGGGATTGTCTGAGGGACAGCCGTCG
ACGATGGATATGGATGAAGGTGGTGCACCAGAGGGCGGTGAGACGGGGCC
GCCGAGTGCCCCACCTCCACCCCGACCCCCGCCACGGGCCTCTCTGACCC
CTCCCGGGGATCGCCCTTCAGTAAACCCCGATCCGTCGTTATCGTTGTCG
GCGGCATCAGTGCAAGCAGCACGGGGGGGCGGGCCCGGGGATGTTGCCAT
GTCCCTCCGGAGCACGCCTGGGATGGAGCACGACGGAGACGGGTCGCGCC
TGTCGCTGATGAATCGCGGTCCGGGAGCCTCCTCATCAGGAGCTTCTTCG
GGAGTCTCCATGGCATCTCGCGGATCTCCCCGGGACTTGCACTGGGGTGA
ACGTGACCTAACAAGCCAGTCGGCGCAGTTCTCGGCAGTGAACGAAAGCG
GCGGAAGGTGTGGGGTGATGGAAGGC
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