mRNA_D-dichotoma_M_contig1101.898.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1101.898.1
Unique NamemRNA_D-dichotoma_M_contig1101.898.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1101.898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1101contigD-dichotoma_M_contig1101:59253..59876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size624
Cds size372
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927615.3023028-CDS-D-dichotoma_M_contig1101:59252..596241622927615.3023028-CDS-D-dichotoma_M_contig1101:59252..59624Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 59253..59624 +
1690798062.6256878-CDS-D-dichotoma_M_contig1101:59252..596241690798062.6256878-CDS-D-dichotoma_M_contig1101:59252..59624Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1101 59253..59624 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927615.319801-UTR-D-dichotoma_M_contig1101:59624..598761622927615.319801-UTR-D-dichotoma_M_contig1101:59624..59876Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1101 59625..59876 +
1690798062.6363976-UTR-D-dichotoma_M_contig1101:59624..598761690798062.6363976-UTR-D-dichotoma_M_contig1101:59624..59876Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1101 59625..59876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1101.898.1prot_D-dichotoma_M_contig1101.898.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1101 59253..59624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1101.898.1

>prot_D-dichotoma_M_contig1101.898.1 ID=prot_D-dichotoma_M_contig1101.898.1|Name=mRNA_D-dichotoma_M_contig1101.898.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=124bp
MVKSYLAYTSPSLHPGTKAKQLHKRQPLRASKLSAEWAYLTPPRKPLWKG
PHTPVSAPPPFQSPAHAERQRPTSRKPLQLRDLANSAAIRDNLLSTLTYN
SLSPTSTHNGGANLLKESSHHQQ*
back to top

mRNA from alignment at D-dichotoma_M_contig1101:59253..59876+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1101.898.1 ID=mRNA_D-dichotoma_M_contig1101.898.1|Name=mRNA_D-dichotoma_M_contig1101.898.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=624bp|location=Sequence derived from alignment at D-dichotoma_M_contig1101:59253..59876+ (Dictyota dichotoma ODC1387m male)
ATGGTCAAATCTTATCTAGCTTATACTTCGCCTTCCTTACACCCCGGGAC
AAAAGCCAAACAATTGCACAAGCGCCAACCCTTAAGAGCCTCAAAATTGA
GCGCAGAGTGGGCCTACCTTACCCCTCCGAGGAAACCCCTCTGGAAGGGA
CCCCACACGCCGGTCTCAGCACCACCGCCTTTTCAATCGCCTGCACATGC
CGAACGCCAACGTCCTACCTCTAGGAAACCCCTTCAACTTCGGGATCTTG
CAAATAGCGCTGCCATCCGGGACAATCTTCTTTCCACACTCACTTACAAT
TCCCTATCGCCTACATCCACTCACAACGGAGGCGCAAATTTACTCAAGGA
GTCGTCGCATCATCAACAATAACCGTCCAACCTGCTTCGGGCCTGTCACC
CGGCTATCCACATCGTACGCGGTTCTTCAAAAGAACTGGCCGCGGTACAA
AGGTCCTACACGCTAAAGCTATAACATCGCGTGGCGCACGTCAGGTAAAT
AATCCCATCCCACGCACGTACAACACCGTTCGACTCTACCCTACACCGTC
CACTCAAGAGAATCCAACAGCTCCAAGCAATCGTCGCCAAGCTCGCCCTG
CGGCCCGAGACGACCATCGGGCAA
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1101:59253..59876+

>mRNA_D-dichotoma_M_contig1101.898.1 ID=mRNA_D-dichotoma_M_contig1101.898.1|Name=mRNA_D-dichotoma_M_contig1101.898.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=744bp|location=Sequence derived from alignment at D-dichotoma_M_contig1101:59253..59876+ (Dictyota dichotoma ODC1387m male)
ATGGTCAAATCTTATCTAGCTTATACTTCGCCTTCCTTACACCCCGGGAC
AAAAGCCAAACAATTGCACAAGCGCCAACCCTTAAGAGCCTCAAAATTGA
GCGCAGAGTGGGCCTACCTTACCCCTCCGAGGAAACCCCTCTGGAAGGGA
CCCCACACGCCGGTCTCAGCACCACCGCCTTTTCAATCGCCTGCACATGC
CGAACGCCAACGTCCTACCTCTAGGAAACCCCTTCAACTTCGGGATCTTG
CAAATAGCGCTGCCATCCGGGACAATCTTCTTTCCACACTCACTTACAAT
TCCCTATCGCCTACATCCACTCACAACGGAGGCGCAAATTTACTCAAGGA
GTCGTCGCATCATCAACAATAAATGGTCAAATCTTATCTAGCTTATACTT
CGCCTTCCTTACACCCCGGGACAAAAGCCAAACAATTGCACAAGCGCCAA
CCCTTAAGAGCCTCAAAATTGAGCGCAGAGTGGGCCTACCTTACCCCTCC
GAGGAAACCCCTCTGGAAGGGACCCCACACGCCGGTCTCAGCACCACCGC
CTTTTCAATCGCCTGCACATGCCGAACGCCAACGTCCTACCTCTAGGAAA
CCCCTTCAACTTCGGGATCTTGCAAATAGCGCTGCCATCCGGGACAATCT
TCTTTCCACACTCACTTACAATTCCCTATCGCCTACATCCACTCACAACG
GAGGCGCAAATTTACTCAAGGAGTCGTCGCATCATCAACAATAA
back to top