mRNA_D-dichotoma_M_contig1100.893.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1100.893.1
Unique NamemRNA_D-dichotoma_M_contig1100.893.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1100.893.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.800e-13
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 2 
Query: 1922 LCGVHQAQVLSAIDAQAVWTRHGELRTKKIRNQACFDASRALHFLGHGVQAERMECFQEACRAIYPGDQELHESI 2146
            LCGVH A +++A+  + V +R G     K RNQAC+D   A++  G GVQ +R +CF  ACRA++PG++E+  S+
Sbjct:   84 LCGVHHAHIIAAVRTEDVTSRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASV 158
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BLAST of mRNA_D-dichotoma_M_contig1100.893.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.320e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 2 
Query: 1922 LCGVHQAQVLSAIDAQAVWTRHG--ELRTKKIRNQACFDASRALHFLGHGVQAERMECFQEACRAIYPGDQELHESI*DAL 2158
            LCG + A+ ++ ID   V  R    E+ TK++RNQAC+DA  AL+  G GVQ  R ECF +ACRA++P DQ L  ++  AL
Sbjct:  116 LCGKYHAEHIANIDVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAAL 196
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BLAST of mRNA_D-dichotoma_M_contig1100.893.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.500e-10
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 2 
Query: 1922 LCGVHQAQVLSAIDAQAVWTRHG--ELRTKKIRNQACFDASRALHFLGHGVQAERMECFQEACRAIYPGDQEL 2134
            LCG + A+ ++ ID   V  R    E+ TK++RNQAC+DA  AL+  G GVQ  R ECF +AC A++P DQ L
Sbjct:   86 LCGKYHAEHIANIDVTRVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACCAVWPDDQPL 158
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BLAST of mRNA_D-dichotoma_M_contig1100.893.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.350e-8
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 2 
Query: 1925 CGVHQAQVLSAIDAQAVWTRHG--ELRTKKIRNQACFDASRALHFLGHGVQAERMECFQEACRAIYPGD 2125
            CG +  + ++ ID   V  R    E+ TK++RNQAC+DA  AL+  G GVQ  R ECF +ACRA++P D
Sbjct:  221 CGKYHGEHIANIDVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289
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BLAST of mRNA_D-dichotoma_M_contig1100.893.1 vs. uniprot
Match: A0A6H5JI26_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI26_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.190e-7
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 2 
Query: 1991 ELRTKKIRNQACFDASRALHFLGHGVQAERMECFQEACRAIYPGDQELHESI*DAL 2158
            E+ TK++ NQAC+DA  AL+  G GVQ    EC  +ACRA++P DQ L  ++  AL
Sbjct:   10 EITTKRMMNQACYDAGMALNARGRGVQLRSQECSTQACRAVWPDDQPLPAAVLAAL 65
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1100.893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JXX9_9PHAE1.800e-1344.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS7_9PHAE1.320e-1146.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE6.500e-1047.95Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE2.350e-846.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI26_9PHAE1.190e-748.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1100contigD-dichotoma_M_contig1100:228228..231919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2827
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1100.893.1prot_D-dichotoma_M_contig1100.893.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1100 229981..231129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.4013455-UTR-D-dichotoma_M_contig1100:228227..2299801622927614.4013455-UTR-D-dichotoma_M_contig1100:228227..229980Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 228228..229980 +
1690798062.1154022-UTR-D-dichotoma_M_contig1100:228227..2299801690798062.1154022-UTR-D-dichotoma_M_contig1100:228227..229980Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 228228..229980 +
1622927614.4367237-UTR-D-dichotoma_M_contig1100:231129..2315591622927614.4367237-UTR-D-dichotoma_M_contig1100:231129..231559Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 231130..231559 +
1690798062.1435819-UTR-D-dichotoma_M_contig1100:231129..2315591690798062.1435819-UTR-D-dichotoma_M_contig1100:231129..231559Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 231130..231559 +
1622927614.4505336-UTR-D-dichotoma_M_contig1100:231671..2319191622927614.4505336-UTR-D-dichotoma_M_contig1100:231671..231919Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 231672..231919 +
1690798062.1536844-UTR-D-dichotoma_M_contig1100:231671..2319191690798062.1536844-UTR-D-dichotoma_M_contig1100:231671..231919Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1100 231672..231919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.4129474-CDS-D-dichotoma_M_contig1100:229980..2302471622927614.4129474-CDS-D-dichotoma_M_contig1100:229980..230247Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1100 229981..230247 +
1690798062.1266785-CDS-D-dichotoma_M_contig1100:229980..2302471690798062.1266785-CDS-D-dichotoma_M_contig1100:229980..230247Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1100 229981..230247 +
1622927614.4239237-CDS-D-dichotoma_M_contig1100:231000..2311291622927614.4239237-CDS-D-dichotoma_M_contig1100:231000..231129Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1100 231001..231129 +
1690798062.1353447-CDS-D-dichotoma_M_contig1100:231000..2311291690798062.1353447-CDS-D-dichotoma_M_contig1100:231000..231129Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1100 231001..231129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1100.893.1

>prot_D-dichotoma_M_contig1100.893.1 ID=prot_D-dichotoma_M_contig1100.893.1|Name=mRNA_D-dichotoma_M_contig1100.893.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=132bp
MYPNRPRTTNVFEALHGKSSKAGSRTLLPARRATPESLRGEHEGKQISVS
TTGTRCLCGVHQAQVLSAIDAQAVWTRHGELRTKKIRNQACFDASRALHF
LGHGVQAERMECFQEACRAIYPGDQELHESI*
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mRNA from alignment at D-dichotoma_M_contig1100:228228..231919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1100.893.1 ID=mRNA_D-dichotoma_M_contig1100.893.1|Name=mRNA_D-dichotoma_M_contig1100.893.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3692bp|location=Sequence derived from alignment at D-dichotoma_M_contig1100:228228..231919+ (Dictyota dichotoma ODC1387m male)
CATGTACCGTCAGTTGATACCGGTACAGTGCTAATGTACAGTAGTGCGAT
GAAAAAGGTGTCGCAATGCACGCAGCCGTGTAGAGAAGAAAGGCCCCTGA
TTGTTCCCTACACAATCCAAATCAAATCCTGTTAAGTGTACCTTAAGCTG
CAAGCTGTCTCAAAACAATCACTTGAGGAGCACTTGAAGCTCTCAATGTC
CATTGCACGAACGACAGCCTCGATGCTCATCGTAGGGACATCATCAAGTG
GTGACAAAAGGCTCAAGACGAACCAAACTGAGACGTCGTAGTGGGAGATC
GAGACAGTCGATTCCTACTGCTACCTTGGGAAGTGCTGTTACCTCACCTT
CACCTCGAGCAGGAATACAGAGATATGGAAGGGGAAGCAAAAGGTATGGA
TTGAGACTGCTAAATCGGCTGTGGATAAATGCTGCGCACGCGCGTCGTCT
CTCTCGCTTTCGCCTCATGTCGATGATATCGACCGTACATGGGTGCCACG
ATCACAGTGTATCAACTTGCATACTGTATTGGATGCAGTTACGGGATCCT
CCACTTTCATGGGGTGCAAAGTGATGAGATATGCATTTCTTGCTGCATCG
GGTTAGGCGATTGTTGAAGCCCATGGGGGCGATATCATCGGGACCGCCTT
CCCGCTCATATGAGACTTACCCACATCAGTGCATGTGTAGAGATTGTATT
GCATGTGAAATTGGCCAGTTTAGTGGTTGGTGATGTATCGTGCGCCGAAG
TGGTGAGGGAGAGACGGCGTCCGAAAGTCTTCTGCTGGCACCGAGGAGTA
GGAAGATCCTGTGCTGACCCTTCGTTTGTCCCCACAGAGGTTGGTCCGGT
TATTTCTCATGTTCTATCGAGTCCGGGGCCCATTTGGCTTTTCGTTCGTC
GAAAGTAAGGAATGGGGAAGATCGGAATTCACTGACAAGGTGCTGTAGAT
ATATAGAGAAGCGACTCGTAAGTCTTCGGTCGAGAGTGGGAACGGTTATA
AGGTGCACAGTACTTCAAATCGTCATGTAATGGATCTTTTGCTTACTATT
AATACTGTACTACAATGCACTGTACTGTACTGTGCGGTACTGCTGTACAG
ATGATAAATCCCAGTAGAGTGAGGAGAGCAATAAAAAAATGGCTCTACGC
CCTTCTTAGTTGGATTTAGTGTTTGACCAAGAGAAAAGCCATTTTTTATT
TGCGCCCCCCACGGTAGTACTATATCACTGTACTGTATCAATAGATGATT
TAAAGAACCGCTGTATGGCAGAGTACAGTAGTACATCTATTAACCCTTCA
AACGCTTGGGGATATTACGGACCAAAAAACAAGGAAGGAACGACCGATAG
TAGAAGAGCGACAGGGGAGCTATTGCCCGAACCCCCGAGGGAAACGCAGC
ACAAGATAAAGAAATGCTATAGATAATACCCAACATGGGAGTATAGGCTA
AGTCGTCCAGTTTGAGTTAGTGCTCCTAACTGTGGTGCAAATTACTACAG
TCGGGTTTTGTATTGCGGTAGAAGGATATGCATCTCCAAGTCTTCAACTC
CGTACCTTGATCAGGAACAGCACAGAGAAAGTATAAATTTAGTAATCTGA
TTCTCGTTGTGTTGATTCATCAAAGCAACGGAAGCTGAAACCCGAAAAGA
CAGCCCTGTACGCAGGAAGTATGGCTCAACCCGTGCAGTTTGACCTACCC
GAGCCTGAGGTGGGTGCTTTTGTAGGAGGCGATGCATCAGCTATCTACGT
TCAATGTATCCAAATCGCCCAAGAACTACCAACGTATTTGAGGCCCTTCA
TGGAAAAAGCAGCAAGGCAGGTAGCCGGACACTTCTGCCCGCACGGAGAG
CAACCCCCGAGAGTCTTAGAGGGGAACACGAGGGCAAGCAGATTAGCGTC
TCTACAACTGGGACACGATGTCTTTGCGGTGTTCATCAGGCGCAAGTCCT
ATCGGCGATAGATGCTCAAGCTGTATGGACCAGGCATGGCGAGCTGAGGA
CGAAAAAAATTCGCAATCAGGTGAGCTCGAAGGACAAAATCGCAGGGAGA
TAGTTATTCGTCATCGATGCGTTGTCTTGGATAGTTCCGGTGCTTTTGTG
TCAGAGGGCATGTCGACATTTGTGCTTTCTTGTACTCGTTTCGAGTCGTC
CAGTAGTCCAGAGTGCCGGGTGTGTACAGTAGTTGGTGCGGACCTCAATT
TTTTGTTCGTTTCTAGAGGCAAACGAAGCCACGAACGTGGTGCGCAGGAA
TATGGTGTATTGTGATAACTCTCCAAAAGCGAAGCAACTGATCAGAGGAA
CAACGTGATGCTCATATCGAGGTGGACGGTTGCTTGGGGTTCTAGTGTGT
ACCACTCGAAGAGAGGTAAATGGAGTCCTGCTTTCATCGCGTCATGAGCT
CCGAGCATGAGGTACGATACTGGAAAAAGGCAGATAAGATGAGAACGGCT
TTCCTTGAAATGTTCACGGTTTGAGTCAGAGCATGTCGTGCCCTCCTTGT
GTCGTTGAGGGAAGAGCTGTATAGACGGTCGTGTACGAGAGATTCTCCGA
GAGATAACATTATAACGCGCTAGGCACGTACGCTGTGCTCCACGATGTGG
GGTGTCGCCGGTATTATAAAATGCGATATTTGAGTTTCTATTGTACGTCC
CAACACGGAAGGAAGATCATTCGATACGTCACGCCTATGTTACGTCACGG
CTCTAACACCAGCATTCAATCTCCACACTTACATGTCCACAATTGGCTTC
CCACCCTCATGTTCGTTTTCCAGGCCTGCTTTGACGCTTCGAGAGCTTTG
CATTTTCTGGGGCATGGAGTTCAAGCGGAGAGGATGGAATGCTTTCAGGA
AGCTTGTAGAGCCATCTATCCCGGGGACCAAGAACTTCACGAGAGCATCT
GAGATGCTTTATGCTGGGTTGTTGCTGTACCATTCGTTGCCATACTGTGT
GGTATCCGGTACTTTGCATGATTTCGGTACGTCTTTTTTGCCTCGTCTAC
CCTGAACGACTGCGCGAAGGCGCTCGAGCCTTGTGGAGGATGACTGTTGC
CTTTATCCTTCCAGGCATCGTGGGGTAGCATGGCCCTGATATCGCATTCG
GAATTGACATGATGGAAAGCTGGTATCAAGGTTTTGATCATAGGCCGCCG
GCCTGCATGAAGACTAACACCGTTGTGGAAAGCAAGAGATGATGCTTCAT
CGACCACCCCTACTCATAGGGAATGCACCATCTATGCTCGAAGAGTGGAC
ATTGTCTTCGTGTTGTGTCGTTGCTCAAATTGCGAGTAGACACATGCGTG
TGGAAGACATGAAAGATACTACAGTAGAGGGTTTCCCCGTAGACCTAAAA
TTATCATTCCATACTTTATACTAGTACAACAGGAATGTCATGACACGAAA
CGAGTGACATGAGGTGTACGGGGAAACCCTCTATTATTTATGGATTGAAC
GTGTGGGTCCAGCTGGGAGTGTTGGAATACTTTCCCAACAGGGAGGACGT
CGAGCTTTTCAGTACTTCCAATCGTAAGGAACCAAACCTTTCATCTTATG
ACTGTCGTTGAATATTTGTCAAGTCAACGATCCATTTTGTTACGGTTTGA
ACTCATATGGTGGGATATGCTTGTGCCCATGTTCAAACTGCAAGAAGATC
GGATGATATGGGGTTACTTGAATACTACAGAAGTGATGATGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1100:228228..231919+

>mRNA_D-dichotoma_M_contig1100.893.1 ID=mRNA_D-dichotoma_M_contig1100.893.1|Name=mRNA_D-dichotoma_M_contig1100.893.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=792bp|location=Sequence derived from alignment at D-dichotoma_M_contig1100:228228..231919+ (Dictyota dichotoma ODC1387m male)
ATGTATCCAAATCGCCCAAGAACTACCAACGTATTTGAGGCCCTTCATGG
AAAAAGCAGCAAGGCAGGTAGCCGGACACTTCTGCCCGCACGGAGAGCAA
CCCCCGAGAGTCTTAGAGGGGAACACGAGGGCAAGCAGATTAGCGTCTCT
ACAACTGGGACACGATGTCTTTGCGGTGTTCATCAGGCGCAAGTCCTATC
GGCGATAGATGCTCAAGCTGTATGGACCAGGCATGGCGAGCTGAGGACGA
AAAAAATTCGCAATCAGATGTATCCAAATCGCCCAAGAACTACCAACGTA
TTTGAGGCCCTTCATGGAAAAAGCAGCAAGGCAGGTAGCCGGACACTTCT
GCCCGCACGGAGAGCAACCCCCGAGAGTCTTAGAGGGGAACACGAGGGCA
AGCAGATTAGCGTCTCTACAACTGGGACACGATGTCTTTGCGGTGTTCAT
CAGGCGCAAGTCCTATCGGCGATAGATGCTCAAGCTGTATGGACCAGGCA
TGGCGAGCTGAGGACGAAAAAAATTCGCAATCAGGCCTGCTTTGACGCTT
CGAGAGCTTTGCATTTTCTGGGGCATGGAGTTCAAGCGGAGAGGATGGAA
TGCTTTCAGGAAGCTTGTAGAGCCATCTATCCCGGGGACCAAGAACTTCA
CGAGAGCATCTGAGCCTGCTTTGACGCTTCGAGAGCTTTGCATTTTCTGG
GGCATGGAGTTCAAGCGGAGAGGATGGAATGCTTTCAGGAAGCTTGTAGA
GCCATCTATCCCGGGGACCAAGAACTTCACGAGAGCATCTGA
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