mRNA_D-dichotoma_M_contig110.880.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig110.880.1
Unique NamemRNA_D-dichotoma_M_contig110.880.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig110.880.1 vs. uniprot
Match: A0A397USF1_9GLOM (Ribonuclease P/MRP protein subunit POP5 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397USF1_9GLOM)

HSP 1 Score: 52.8 bits (125), Expect = 8.370e-5
Identity = 31/105 (29.52%), Postives = 56/105 (53.33%), Query Frame = 2 
Query:   71 MVLLKNRYII-ASISGRTGH----VRNLTTKDIAVMLKRSVEVNFGEFGSAQASRTMKVCSYDQTSGVFVVRTSVDIYHMVRLCLTLLTGSSGMRISVNVEALTG 370
            MV LK+R+I+  ++   T H    +  LT+ DI + +K S+++NFG++G    S ++ V  Y   + + ++R S D Y M    LT +T  +    ++ V  + G
Sbjct:    1 MVRLKHRWILFETLFENTSHQDTSIDPLTSHDIYITVKESIQLNFGDYGRGCTSSSLNVKYYSPHTNIGLLRVSRDYYRMAWCALTFITQINSRSCTIRVLHVGG 105
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig110.880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A397USF1_9GLOM8.370e-529.52Ribonuclease P/MRP protein subunit POP5 n=2 Tax=Gi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig110contigD-dichotoma_M_contig110:427310..431932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibonuclease P/MRP protein subunit
Ec32 orthologEc-15_001380.1
Exons4
Model size1528
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig110.880.1prot_D-dichotoma_M_contig110.880.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig110 428333..431862 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927612.3515987-UTR-D-dichotoma_M_contig110:427309..4283321622927612.3515987-UTR-D-dichotoma_M_contig110:427309..428332Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 427310..428332 -
1690798061.3271682-UTR-D-dichotoma_M_contig110:427309..4283321690798061.3271682-UTR-D-dichotoma_M_contig110:427309..428332Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 427310..428332 -
1622927612.4173872-UTR-D-dichotoma_M_contig110:431862..4319321622927612.4173872-UTR-D-dichotoma_M_contig110:431862..431932Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 431863..431932 -
1690798061.373589-UTR-D-dichotoma_M_contig110:431862..4319321690798061.373589-UTR-D-dichotoma_M_contig110:431862..431932Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 431863..431932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927612.363508-CDS-D-dichotoma_M_contig110:428332..4284691622927612.363508-CDS-D-dichotoma_M_contig110:428332..428469Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 428333..428469 -
1690798061.3361177-CDS-D-dichotoma_M_contig110:428332..4284691690798061.3361177-CDS-D-dichotoma_M_contig110:428332..428469Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 428333..428469 -
1622927612.376376-CDS-D-dichotoma_M_contig110:429700..4298381622927612.376376-CDS-D-dichotoma_M_contig110:429700..429838Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 429701..429838 -
1690798061.345919-CDS-D-dichotoma_M_contig110:429700..4298381690798061.345919-CDS-D-dichotoma_M_contig110:429700..429838Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 429701..429838 -
1622927612.3886364-CDS-D-dichotoma_M_contig110:430865..4309261622927612.3886364-CDS-D-dichotoma_M_contig110:430865..430926Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 430866..430926 -
1690798061.3564248-CDS-D-dichotoma_M_contig110:430865..4309261690798061.3564248-CDS-D-dichotoma_M_contig110:430865..430926Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 430866..430926 -
1622927612.4009237-CDS-D-dichotoma_M_contig110:431763..4318621622927612.4009237-CDS-D-dichotoma_M_contig110:431763..431862Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 431764..431862 -
1690798061.3647845-CDS-D-dichotoma_M_contig110:431763..4318621690798061.3647845-CDS-D-dichotoma_M_contig110:431763..431862Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 431764..431862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig110.880.1

>prot_D-dichotoma_M_contig110.880.1 ID=prot_D-dichotoma_M_contig110.880.1|Name=mRNA_D-dichotoma_M_contig110.880.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=145bp
MVLLKNRYIIASISGRTGHVRNLTTKDIAVMLKRSVEVNFGEFGSAQASR
TMKVCSYDQTSGVFVVRTSVDIYHMVRLCLTLLTGSSGMRISVNVEALTG
CRRSFKVAMMKAHAVGYARAGLSEKTASLLLKQKELEPEDEMDR*
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mRNA from alignment at D-dichotoma_M_contig110:427310..431932-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig110.880.1 ID=mRNA_D-dichotoma_M_contig110.880.1|Name=mRNA_D-dichotoma_M_contig110.880.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4623bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:427310..431932- (Dictyota dichotoma ODC1387m male)
ACCGTGAGATCATCTCGCTCCCTGTCACCAAGGAGGAGTTGGGTCTGATT
GTGGAAAGGCTCACCTTCACATGGTCCTTCTCAAAAACCGATACATCATC
GCGAGTATCTCGGGGAGAACGGGTCATGTGCGAAATCTCACGACGAAGGA
CATCGCCGTGATGCTTAAAGTGAGGAGGAATTGGAATCTCGAACCTACTG
CCCCAAGATATCAGGGTTGCGAGACTGTTGTTCTGGGCAATTTCGGATCA
AGGGGATGCTTCAATCGACAAACAGTCTGTCGCCATACGTATGTTTTCCT
AGACCTTGCCTGTGCTTGCTTTGTTTGATCATGATTGATGTCAAACACCA
GGCCACAGTCATTCCTGCGTAACTTGGTTTACGTCTTACTCATGAAACCG
CTTCGATATCTTCAATGAGGCGGATGAATGGAAACGCGCTTACCGTGTGT
TTCTTGACTCGTGTCCCCTTCTGTAGGGAAGTGTCAATCGCGTATAGCAT
CAGATACCCAACGCTAGACGTGTCTCCCAGGTTGCACTTCATCAAGTGTT
GAGTGTACACGACTCCGGCAGCCGACGATCGTGGAAGATAGGCTTCCGCC
TCCTCTCCGACATTTGCCCACATGAGAACTACAGTACAGTACATGGAAAT
CTCATGATGCTGACACCATCGGATGCTCAAGCCCTCTTGACCACTTTGCA
ACGCGATAACTTGCCGAAGAATTCTTCTTTTCGCCAAGAACGACGACGAC
ATAATCATGAAGGGTGTCGAGAAGGGGTGAAACGTTCACTCTTGGTTGAG
ATGATAAAAGCAAACCTGACCGAAGCTCCTTGAACTTCCCCGTCGTCGCC
TGGCAGCAGTTCGTGTTCCAAGCTTGTTCCCTGTATCTCCCCGTCCCCTT
TATCCGTTCATGAGTCCATCATGGTATCGGTGCCTGCCGATACCAAGCAA
CCCGTTTCCGACTCGTCTCTTCCCCTGCGTTGCTCGGGAACCGTCAATGT
CGCCAGAGATCCGTCGAGGTCAACTTCGGCGAGTTCGGTTCCGCCCAGGC
ATCAAGAACGATGAAAGGTGGGCGTTGGGCGGAGTAAGGTTCTCCCGGAG
CTTCTCCGAACTAGGCCGTTGCGAACAACCCGACAGAGCTCGCGATCCGT
CAGGGACGCGTTTCCGGATCCATGACTGAGATTCTAAAGCCTTGTAAAAG
TTCAGTTGGTTCGGCGAATCTCGCGTTCATTGAAGATAACTGATTATCTT
GAGCAAGTTGAACCCCCGAATAGGTTTTTCGCCTTCCGGTTCGGTTCGTG
AGGCAATTCCCTGACTTTCGGATCGGTTTTCATCGTATCTCGAGGAAGTG
GCCCCTTCTCCCCTCCAAAGGAAAGATATTTTCTTGTCAAACTCGCTCTA
TTTATCGAGGTCATCCCGTTGGGTAATCTATGTCGAACAAGGCCTCTCGG
TATCAAGAAACCCTAACTGACGTTCCCCTAGTGGGATGACGCATCATGGA
CGGGCACGTGTGTTTGGCACAAGGGTAGCGCAGAGCACTCGGGGATTGCT
CGTTAGTTAGCATCGCCTCCGTCGCTACGGGAAACTTCTTCTTGCCTCCG
GCTCGCAGGCTCCGTGAGGAGATGGCACGTCCGACGACGTTGTGGAACGG
CCCATGCGACTCTCCGGAGGCGGCTCCGTGGGGGCGTCTGCCGCTTGAGC
GTCCCGCAGCAGTACCGTTTGAATCAAGTCAGCGTTGGGCCAGGATTACG
GGCGTGGGAGCGCTTGACGTGATCCCTTAGAGTAGACTCGATAGCACATG
GTGTCCCACGAGTAGGTCTCGCTCTGTCTGGGGAGAACGGCTTCGCACGA
CGAGCCTCTCCGAGTTTTCCTTGCTTAACGGCGTCTACGTAATGTTGCAT
GTACTACCGAAACCTCACGAGCGAGGCCGGTAAGCATGGATTAACAAGCG
GTAAGCTTCGCGAGAATTTACTTAATCTCGATCGTGCAATGTTCGTTCTC
CCGTACCCCTCCCTCATTTCCGCCGCGCTCTCCGCCGCGCTTTATGCCGC
GCACGTGCATGGAAACCCCCTTCTCTTCTGACCGACCGCCGCAGTGTGCT
CCTACGATCAAACGTCGGGTGTATTCGTCGTGCGCACGAGCGTCGACATT
TACCACATGGTTCGCCTGTGCCTGACGCTCCTAACCGGGTCGTCGGGGAT
GCGTATTTCTGTCAACGTGGAAGCCCTTACCGGTAAGTCGTCGAACCGTG
CCATCAGCCACGGGCAGGGTTAGATGAGACCATCGCGCGCTCCGCACGAA
CAATCGTTTCGGCAGATGTTACCCCCAGCATCGCAGTTTGCTATCGTGAA
CCTTCCTGTTCCTCCGTAAGGCCCCGATTTTGTTCTCATGCAGATAACCG
CGGTGTGAGTCGACTCATGGTCAGAAGGCCCACGCAAAACGCCCATCGCA
GATGCATCGCCGTGCCTACAGGCGCGTCTACGTTTGTTTAGCATCGATCA
CCAACGGTCCACCCCCGGCGTTGATGCATCGGACGGTGTCGAACACCCCA
TCGCTCGTTTTTGTGTGTTTCGAGTGACTTGTGCGCTTGTCATGATCCCC
CGTGCATCCTTGCGGGCAACCACGGCACGGGATGGCGCACGATCGCTGAC
TGACGCACCGAAATTCGAGCGGTGTCTGAAGGGGTGGGGGAAACTTGGAG
AAAAAACTTGCATGAAATGGGGATGGCGCATGGCCATGGCTCCCGCACCG
TAACCCAGGACTGCCCTTCGACAGGATTCACCGCATCTCGATAATCACAC
ACATGAACACACACACGCTCGCACATACACATCGGTAAAGAGAGCTCGAG
GGCATTGTTTGCCGGGGACCTTGGCAGCCGTGTCATTCTTGAAAAACGGA
AAAAACCCTGGAATGTTGAGAGCGGTTGGGAAGAAGCTATGGACGATTCG
AGAAGATACATGTAATGGAAGTGTGGCATGAGTGCTTTCTGTAACTGAGC
CAGATGACGGCGTGGGTATACGAATGGTGTATCTCACATGTATTATCACT
CATGATGTGAGAATTATCCGAAACTAAGCCGAGTTACAACGTGGTTAGAG
AGGATTGATGTAGCACACGCAAATACGCAGTGTGCGTTGCGGATCATGAG
AAACTGAGCTGGACCGCAGCGCGATTATATGCGACGAGTATAGCACACAA
CGCATATGGACACATCCGAAGTAAAGTGAATCGGGATAGGATCGTTCCAG
TGTTGGTACAAGCCGTAGTTTCCCAATGGAAAAGAAGGGTGGTGTCTTGG
TCGAAGAACGCCTCCGCGTGGAGCTAAGTCCTACGGGTTTGAACTGGGGG
CCCGGAAGTAGGAGTGCGCCGTCCCTGATGGTAGATTGGTGTCGGGGGTC
GGGGGTACTTGGACCTGGCGTCGTTGATCTCCAACCTCGTATTCTTTCGT
GTGCCCTCGACAGGCTGCAGGAGGTCCTTCAAGGTCGCGATGATGAAGGC
TCACGCCGTTGGCTACGCGCGCGCCGGTCTCAGCGAGAAGACCGCGTCTT
TGCTGTTGAAGCAAAAAGAGCTCGAGCCCGAAGATGAAATGGATCGGTGA
CGACCGCTCTCTTTCGGGAGGAAAGGTTGTGCCCGTTCCACCCCACGGCG
TTCATCGCCGTTTTTTTTAATGAATCTCCGGTGGCATCAAGCGAGGAAGG
GATCTCACCCGCCGGGAACGATCTCGAACAAATCCGTTGGAGACAGGGGT
CATCGAAGCTGTCGATCGCAGCTCGCGTCGAACGGCGAATGGGTCATGGC
GCACGTTGAACCCCGTGTCCGTCACTGTTAGTCGAATCTGTCCGTCGCGG
ACTGCATCGAAATTCCGTCGGTTGCTGTCGGTGTCGAGTCTGTCGGTCAG
GGACTCCGCATCGAATCCGTGGGGCCTAGCCCGTCTTGGGTCCGCCTGTC
TCAGTATCCCGGTTATTGAGGTCTTGTGAAGTATCAGGACGTCTTGGGCC
GGCCACCCGCCGTTATGGTTTGGATGAACTGCCGCTTGTCTCTGTGTCAT
CGCGCGCGTGTGTGTATGAGTATATATATGTGCGTGTATATATGTGTGCG
TTCTACATGGTGTCCAACATATGAATATCGATGATCGATTTCGAAACACC
TCATCCTGATGGTCCTACCATAGATGATGTCGAATCCAACACGTCGATGT
GCTTCCACCAGCAAGGTGAAGCGCGTGAAGAATTCACGGAGGAAAGGTGA
ACAGAAACGGATCGCCTCGGCCTACTCCATTGGTGTTACTCAAGCACGCC
TCACGCCTCGCGCAGTGACCGGACGACGGTAGATGCTGCATCCCCACCTT
GATCCGATTCGTGGTATGTCGTTGAGGAGAAATCGCGGGGGTCCCCGTGT
TTTATCTGAGATGGTCAATAAGGGCTTCATGTTGTAGTCTACACCGAGGC
CTGTAGTAGTATATCCCGCGCATGTCGAGGGCTTGTTCCTGGATGCGAGC
TCCCTTTGCCAACGACAAATTTGCGATCAACCTGAGGCGATTTGACTGCT
GCTGTCTCGGTTCTCTCGCGGGGAGGGTGGCGAGATTCACCCGGGGGGTT
GGAAACCTGATTGGCCTCGTGCG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig110:427310..431932-

>mRNA_D-dichotoma_M_contig110.880.1 ID=mRNA_D-dichotoma_M_contig110.880.1|Name=mRNA_D-dichotoma_M_contig110.880.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=870bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:427310..431932- (Dictyota dichotoma ODC1387m male)
ATGGTCCTTCTCAAAAACCGATACATCATCGCGAGTATCTCGGGGAGAAC
GGGTCATGTGCGAAATCTCACGACGAAGGACATCGCCGTGATGCTTAAAA
TGGTCCTTCTCAAAAACCGATACATCATCGCGAGTATCTCGGGGAGAACG
GGTCATGTGCGAAATCTCACGACGAAGGACATCGCCGTGATGCTTAAAAG
ATCCGTCGAGGTCAACTTCGGCGAGTTCGGTTCCGCCCAGGCATCAAGAA
CGATGAAAGAGATCCGTCGAGGTCAACTTCGGCGAGTTCGGTTCCGCCCA
GGCATCAAGAACGATGAAAGTGTGCTCCTACGATCAAACGTCGGGTGTAT
TCGTCGTGCGCACGAGCGTCGACATTTACCACATGGTTCGCCTGTGCCTG
ACGCTCCTAACCGGGTCGTCGGGGATGCGTATTTCTGTCAACGTGGAAGC
CCTTACCGTGTGCTCCTACGATCAAACGTCGGGTGTATTCGTCGTGCGCA
CGAGCGTCGACATTTACCACATGGTTCGCCTGTGCCTGACGCTCCTAACC
GGGTCGTCGGGGATGCGTATTTCTGTCAACGTGGAAGCCCTTACCGGCTG
CAGGAGGTCCTTCAAGGTCGCGATGATGAAGGCTCACGCCGTTGGCTACG
CGCGCGCCGGTCTCAGCGAGAAGACCGCGTCTTTGCTGTTGAAGCAAAAA
GAGCTCGAGCCCGAAGATGAAATGGATCGGTGAGCTGCAGGAGGTCCTTC
AAGGTCGCGATGATGAAGGCTCACGCCGTTGGCTACGCGCGCGCCGGTCT
CAGCGAGAAGACCGCGTCTTTGCTGTTGAAGCAAAAAGAGCTCGAGCCCG
AAGATGAAATGGATCGGTGA
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