mRNA_D-dichotoma_M_contig110.879.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig110.879.1 vs. uniprot
Match: D8LQ08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ08_ECTSI) HSP 1 Score: 312 bits (800), Expect = 6.560e-86 Identity = 158/284 (55.63%), Postives = 203/284 (71.48%), Query Frame = 3
Query: 126 MGKLNSLIKLIVINANGFLALGGLGTIFVASVILSSDLVRLNKGYLRPRLIFMLCSGVLVLCMAIIGCVGTARQTLRNVTWGGRRLLSLFQLILLSVASGQGLVLLLLHRIEVSLRETAEDLPDYYGQFEGRFRSGFNEAFFDQQCSSRTGGAGWIWDLVEAHCTGKLSDESCQC--LASGIVLPV-CASPITYSPEGCCPDAELCEAGEDMACPYTTCREQVLEVILDYITPARVYSMVGLMLEAVTAILSCLLICYNPRDTTEDILIKSGTIIRSDDGKGYG 968
MGKLNS IK +V NAN L LGG+G + VAS++L++D ++L + Y++ I + G+LV M+IIGCVGT RQ R+ W GRR+LSL+QLIL++V GQG+V + L+ IEVSL E A DLP +G+FEGRFR GFNEA+F+Q CS+ GG W+W LVE HC +S ++C C + G LP C++P TYS EGCCPD E CEAG++ ACPY CR +LEV+L YITPAR YS +LE + IL+CLLICYNPRD+TEDILIK+GTI+R G G
Sbjct: 1 MGKLNSFIKFVVFNANALLFLGGVGIVIVASLLLAADFIKLAQTYMQTLGIITMMVGILVAAMSIIGCVGTNRQIERDRLWSGRRILSLYQLILVAVVVGQGVVQMRLYSIEVSLEEAAADLPIQHGEFEGRFREGFNEAYFEQLCSASAGGDSWVWSLVEDHCPDAISRDACSCSDILDGSGLPARCSTPETYSAEGCCPDEEFCEAGKEEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQHHKPGEG 284
BLAST of mRNA_D-dichotoma_M_contig110.879.1 vs. uniprot
Match: A0A812W7H9_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W7H9_SYMMI) HSP 1 Score: 145 bits (366), Expect = 1.020e-34 Identity = 92/283 (32.51%), Postives = 153/283 (54.06%), Query Frame = 3
Query: 126 MGKLNSLIKLIVINANGFLALGGLGTIFVASVILSSDLVRLNKGYLRPRLIFMLCSGVLVLCMAIIGCVGTARQTLRNVTWGGRRLLSLFQLILLSVASGQ----GLVLLLLHRIEVSLRE--TAEDLPDYYGQFEGRFRSGFNEAFFDQQCSSRTGGAGWIWDLVEAHCTGKLSDESCQCLASGIVLPVCASPITYSPEGCCPDAELC--EAGEDMACPYTTCREQVLEVILDYITPARVYSMVGLMLEAVTAILSCLLICYNPRDTTEDILIKSGTIIRSD 950
MG+LN++IK +V+N N A L +I +A +++ SD L++G+ I ++ VL+L ++++GC+G + Q+ + W GRR+L+L+QL LL+ G +++L+ ++ + + +A+D DY G+FE FNE FF + W W V+ HC +S +C+A G YS C D +LC ++G CPY CR VL+ ++ Y+ P V +V + + +L+C+LICY P+DT E +L+K+GTI D
Sbjct: 1 MGRLNNMIKWLVMNVNLIYAAVALVSIILAVLVMVSDWGSLDRGFFLGWCIVVILFSVLILMISLLGCMGVSHQSEQLSCWTGRRILALYQLSLLATIIGNLWMVTKLIILVRGLDATYSDLTSADDTVDY-GRFEEAVADRFNEFFFSAAATCTDSKYAWFWSWVDDHC--PVSIGQARCMACG----------DYSVTTCPADEDLCYAQSGGMDKCPYDQCRAGVLDYLISYMEPLNVALLVIAVFQLCIMVLTCMLICYTPQDTVEQMLVKTGTISEKD 270
BLAST of mRNA_D-dichotoma_M_contig110.879.1 vs. uniprot
Match: K0TPL8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPL8_THAOC) HSP 1 Score: 110 bits (275), Expect = 9.480e-23 Identity = 73/225 (32.44%), Postives = 109/225 (48.44%), Query Frame = 3
Query: 303 VLCMAIIGCVGTARQTLRNVTWGGRRLLSLFQLILLSVASGQGLVLLLLHRIEVSLRETAEDLPDYYGQFEGRFRSGFNEAFFDQQCSSRTGGAG-WIWDLVEAHCTGKLSDESCQCLASGIVLPVCASPI--------TYSPEGCCPDAELCEAGEDMACPYTTCREQVLEVILDYITPARVYSMVGLMLEAVTAILSCLLICYNPRDTTEDILIKSGTIIRSD 950
VL + GC G RQT R + GR++L L QL+L++V L ++ S+R D Y FE R F+ +F CSS AG W+ V A+C ++ +C SG +C + + GCCP ELC++G + ACPY CR ++ + ++ PA+V + + + +LS LLICYNPRD+ E L K+G + D
Sbjct: 14 VLFCSFYGCNGALRQTKRKGCFAGRKILCLHQLLLIAVLVFAFANLEWTTKLHRSVRSFLRDPSQDYNGFEERLSVFFDGEYFKSLCSSNDSTAGDWLEKFVSANCPQQMKPTACA--LSGRKRDMCDTTCYALQGDTDRFQELGCCPSKELCQSGFESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVLSIED 236
BLAST of mRNA_D-dichotoma_M_contig110.879.1 vs. uniprot
Match: A0A7S2G7W8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7W8_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 5.320e-19 Identity = 75/279 (26.88%), Postives = 112/279 (40.14%), Query Frame = 3
Query: 135 LNSLIKLIVINANGFLALGGLGTIFVASVILSSDLVRLNKGYLRPRLIFMLCSGVLVLCMAIIGCVGTARQTLRNVTWGGRRLLSLFQLILLSVASGQGLVLLLLHRIEVSLRETAEDLPDY-------YGQFEGRFRSGFNEAFFDQQCSSRTGGAGWIWDLVEAHCTGKLSDESCQCLASGIVLPVCASPITYSPEGCCPDAELCEAGEDMACPYTTCREQVLEVILDYITPARVYSMVGLMLEAVTAILSCLLICYNPRDTTEDILIKSGTIIRSD 950
LN L+K N L G+ I ++ L+ L+ R ++ +GV++L + + GC G Q R + GRRLLS +Q+ LL++ Q + + SL+ +L Y E + FN+ +FD S+ G + W V+ C S C CPD C+ G CPY CR + L + P Y + + E IL+C LIC+NPRD + IL+KSG D
Sbjct: 25 LNGLLKFFFFIVNSMYCLVGVALIGLSIYCLTDAWADLDPDIYRSAATILISTGVVILIIVMCGCFGAVYQEQRTGSCRGRRLLSFYQICLLTLIGLQFYTTVYMLNTAESLQAVKGELASAKSNVTVEYVDAERSLSTKFNDYYFDTVTGSQDG---YFWKFVDESCPKSSGMGSDDCNVDSYATT-------------CPDEASCDDGASAQCPYDLCRRAAVTRFLGIVEPIGEYGIFVCIFETALMILTCCLICFNPRDAEQTILMKSGNFAADD 287
BLAST of mRNA_D-dichotoma_M_contig110.879.1 vs. uniprot
Match: W7U843_9STRA (Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U843_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.100e-18 Identity = 83/283 (29.33%), Postives = 135/283 (47.70%), Query Frame = 3
Query: 135 LNSLIKLIVINAN-----GFLALGGLGT-IFVASVILSSDLVRLNKGYLRPRLIFMLCSGVLVLCMAIIGCVGTARQTLRNVTWGGRRLLSLFQLILLSVASGQGLVLLLLHRIEVSLRETAEDLPDYYGQFEGRFRSG-FNEAFFDQQCSS---RTGGAG---WIWDLVEAHCTGKLSDESC-QCLASGIVLPVCASPITYSPEGCCPDAELCEAGEDMACPYTTCREQVLEVILDYITPARVYSMVGLMLEAVTAILSCLLICYNPRDTTEDILIKSGTII 941
LN IK +V +N L LGGL ++ A+ + + L L +G++ ++ G+ ++ ++ +GC G RQ +R GGRRLLSL+QL+LL + L + + + ++ Y + E FN +F + ++ GGAG W D C + +C C G + + Y+ +GCCP +LC AG ACPY CR V + + + Y L+L+ + I +C+LICYNPRD+ ++L K+G +I
Sbjct: 52 LNDNIKFVVSTSNTCFCIAGLVLGGLAAYLYYATSLAAVTLTSLTQGWIMWTMLV----GLGLVFLSCLGCFGVKRQIVRVGPCGGRRLLSLYQLLLLGLLFAFTTAFLAMRTLHTQVPLLLDNPDAVYARSEQNLLVPYFNRLYFKTRKAAVRAHDGGAGSFNWFADWTRQSCPLSMDVGTCTSCGTDGDG----GTSVPYT-DGCCPRDDLCTAGNLDACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVI 325 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig110.879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig110.879.1 >prot_D-dichotoma_M_contig110.879.1 ID=prot_D-dichotoma_M_contig110.879.1|Name=mRNA_D-dichotoma_M_contig110.879.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=644bp MGKLNSLIKLIVINANGFLALGGLGTIFVASVILSSDLVRLNKGYLRPRLback to top mRNA from alignment at D-dichotoma_M_contig110:371595..420497+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig110.879.1 ID=mRNA_D-dichotoma_M_contig110.879.1|Name=mRNA_D-dichotoma_M_contig110.879.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=48903bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:371595..420497+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig110:371595..420497+ >mRNA_D-dichotoma_M_contig110.879.1 ID=mRNA_D-dichotoma_M_contig110.879.1|Name=mRNA_D-dichotoma_M_contig110.879.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=3864bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:371595..420497+ (Dictyota dichotoma ODC1387m male)back to top |