mRNA_D-dichotoma_M_contig1099.848.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1099.848.1
Unique NamemRNA_D-dichotoma_M_contig1099.848.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A6H5KUF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.320e-8
Identity = 34/87 (39.08%), Postives = 41/87 (47.13%), Query Frame = 2
Query:  140 SIDIHVAAKNGDVAAIAEYIRNGGNLDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVFAEENGHHGCASLIQG 400
            SIDIH AA+ G+V AI  YIR GGN+ VQD QGN PLH+                                   +NGH GCA L++G
Sbjct:    4 SIDIHDAAQQGNVTAIEAYIRLGGNMYVQDKQGNPPLHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGHDGCAMLLRG 90          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A1Y6CIS9_9PROT (Uncharacterized protein n=1 Tax=Pseudobacteriovorax antillogorgiicola TaxID=1513793 RepID=A0A1Y6CIS9_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 1.210e-7
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 2
Query:  149 IHVAAKNGDVAAIAEYIRNGGNLDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVFAEENGHHGCASLIQGKP 406
            ++ AAK  +   +AEY++ GG L+VQD +G  PL  A+ +G E+ +  LLG G DP   ++ G T+L+ A   G+   A  +   P
Sbjct:   37 VNRAAKTNNQNLLAEYVKQGGPLNVQDQKGYTPLIFAAYYGHEQLITFLLGHGADPCLKDTRGNTALMGAIFKGNLKIAYQLMKTP 122          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A8C4S9P1_ERPCA (Cyclin dependent kinase inhibitor 2C n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4S9P1_ERPCA)

HSP 1 Score: 57.4 bits (137), Expect = 1.540e-7
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 2
Query:  152 HVAAKNGDVAAIAEYIRNGGNLDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVFAEENGHH 376
            H AA+ G +  +     NG ++++QDH+GN PLHLA+R G  + V  L+   +DP   N  G T+   AE +  H
Sbjct:   77 HDAAREGFLETLMVLTENGADVNLQDHRGNLPLHLAAREGHLDIVRHLIDLTIDPLVRNKEGHTASDLAEMHDRH 151          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A7J7QHG7_9CHLO (GPCR-chaperone-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QHG7_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 5.470e-7
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 2
Query:  140 SIDIHVAAKNGDVAAIAEYIRNGGN--LDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVFAEENGHHGCASLIQGKPLRTLR 421
            S ++H AA   DVA +A  ++N       + D  GN PLH+A+  G  E+VAALL AG+ PSA +S G   L  A       CA L+Q   L  ++
Sbjct:   22 SYNLHRAAFENDVAKLAALLQNTSQEQRSLLDLHGNNPLHIAAMRGHAEAVAALLDAGLSPSARSSRGWVPLDEACAARSTACARLLQRALLAEVK 117          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A6M8W2H7_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8W2H7_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 2.590e-6
Identity = 29/90 (32.22%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  149 IHVAAKNGDVAAIAEYIRNGGNLDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVFAEENGHHGCASLI----QGKP 406
            +H AA+   V+   +++     ++ +D  GN PLH+A +HG E  +  LL  G DP   +S G T++  AE+  H+   +L+    +GKP
Sbjct:  692 LHQAAEKARVSLTKKFVAAKLPVNRKDVNGNTPLHIAIKHGNEPVIEYLLENGADPKIADSVGFTAVDLAEQRNHYQITNLVKAYAEGKP 781          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A7S2SRK5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRK5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.290e-6
Identity = 36/90 (40.00%), Postives = 46/90 (51.11%), Query Frame = 2
Query:  149 IHVAAKNGDVAAIAEYIRNGGNLDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVFAEENGHHGCASLIQGKPLRTL 418
            +HVA K+G   A+A   R   ++D +   GNRPLHLA RHG       LL AG  P+AVN+  +T L        H  A   Q  P+R L
Sbjct:  359 LHVAVKHGHRRAVAMMSRVA-DVDCESDDGNRPLHLACRHGFAGIAEDLLEAGAAPNAVNANSETPL--------HMAARHNQPLPVRVL 439          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A8C4S8N6_ERPCA (Cyclin dependent kinase inhibitor 2C n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4S8N6_ERPCA)

HSP 1 Score: 52.4 bits (124), Expect = 1.170e-5
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 2
Query:  152 HVAAKNGDVAAIAEYIRNGGNLDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVF 355
            H AA+ G +  +     NG ++++QDH+GN PLHLA+R G  + V  L+   +DP   N  G  ++ F
Sbjct:   77 HDAAREGFLETLMVLTENGADVNLQDHRGNLPLHLAAREGHLDIVRHLIDLTIDPLVRNKEGGKAVPF 144          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A7T7C0M7_9GAMM (Ankyrin repeat domain-containing protein n=13 Tax=Halomonadaceae TaxID=28256 RepID=A0A7T7C0M7_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 1.290e-5
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  143 IDIHVAAKNGDVAAIAEYIRNGGNLDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLV 352
            IDI  AA++GD AAI EY++ GG+L V + +   P  LA+ +G  +++A L  AG D  A++  G  + +
Sbjct:   43 IDIFDAARDGDNAAIQEYVQQGGDLSVTNSRSYTPFILAAYYGHTDTLALLKTAGADACALDEKGSNAFM 112          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A8E0RU64_9TREM (Transient receptor potential cation channel subfamily A member 1 n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RU64_9TREM)

HSP 1 Score: 53.5 bits (127), Expect = 1.710e-5
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 2
Query:  149 IHVAAKNGDVAAIAEYIRNGG-NLDVQDHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVFAEENGHHGCASLI 394
            +H AA  G+  A  + ++  G ++++ DH G RPLHLA  H +   V +LL AG DP AV   G   + FA   G+     LI
Sbjct:  187 LHYAAIRGNEVATYQLLKEPGIDIELSDHDGMRPLHLAVAHNETGIVHSLLTAGADPFAVTQRGNLPIHFACITGNVELVELI 269          
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Match: A0A0D9V7D2_9ORYZ (MSP domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9V7D2_9ORYZ)

HSP 1 Score: 53.1 bits (126), Expect = 2.030e-5
Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 2
Query:  149 IHVAAKNGDVAAIAEYIRNGGNLDVQ--DHQGNRPLHLASRHGQEESVAALLGAGVDPSAVNSTGQTSLVFAEENGHHGCASLIQGK 403
            +H+AA  G   AIA  +   G +D++  D +G+RPLHLA   G  E+V  LL  G D  A    G T L  A   G+   A L++G+
Sbjct:  319 LHLAAIKGHCDAIA-LLAGSGCMDIECEDVEGHRPLHLAVEGGSAEAVEMLLDMGADVHAATRRGATPLQMAVTMGYDAIAQLLRGR 404          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1099.848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KUF8_9PHAE8.320e-839.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y6CIS9_9PROT1.210e-736.05Uncharacterized protein n=1 Tax=Pseudobacteriovora... [more]
A0A8C4S9P1_ERPCA1.540e-737.33Cyclin dependent kinase inhibitor 2C n=2 Tax=Polyp... [more]
A0A7J7QHG7_9CHLO5.470e-738.54GPCR-chaperone-domain-containing protein n=1 Tax=S... [more]
A0A6M8W2H7_9PROT2.590e-632.22Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7S2SRK5_9STRA6.290e-640.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A8C4S8N6_ERPCA1.170e-536.76Cyclin dependent kinase inhibitor 2C n=1 Tax=Erpet... [more]
A0A7T7C0M7_9GAMM1.290e-538.57Ankyrin repeat domain-containing protein n=13 Tax=... [more]
A0A8E0RU64_9TREM1.710e-537.35Transient receptor potential cation channel subfam... [more]
A0A0D9V7D2_9ORYZ2.030e-537.93MSP domain-containing protein n=1 Tax=Leersia perr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1099contigD-dichotoma_M_contig1099:227925..228840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score60.1
Seed ortholog evalue6.6e-07
Seed eggNOG ortholog946362.XP_004989547.1
EggNOG free text desc.negative regulation of interferon-alpha production
EggNOG OGs38KU9@33154,COG0666@1,KOG0504@2759,KOG4308@1,KOG4308@2759
COG Functional cat.AT
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-20_000380.1
Exons3
Model size424
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1099.848.1prot_D-dichotoma_M_contig1099.848.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1099 228061..228840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927603.3821843-UTR-D-dichotoma_M_contig1099:227924..2280601622927603.3821843-UTR-D-dichotoma_M_contig1099:227924..228060Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 227925..228060 +
1690798057.8361278-UTR-D-dichotoma_M_contig1099:227924..2280601690798057.8361278-UTR-D-dichotoma_M_contig1099:227924..228060Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 227925..228060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927603.3973138-CDS-D-dichotoma_M_contig1099:228060..2280941622927603.3973138-CDS-D-dichotoma_M_contig1099:228060..228094Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 228061..228094 +
1690798057.85851-CDS-D-dichotoma_M_contig1099:228060..2280941690798057.85851-CDS-D-dichotoma_M_contig1099:228060..228094Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 228061..228094 +
1622927603.4089122-CDS-D-dichotoma_M_contig1099:228258..2283441622927603.4089122-CDS-D-dichotoma_M_contig1099:228258..228344Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 228259..228344 +
1690798057.8685737-CDS-D-dichotoma_M_contig1099:228258..2283441690798057.8685737-CDS-D-dichotoma_M_contig1099:228258..228344Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 228259..228344 +
1622927603.4221146-CDS-D-dichotoma_M_contig1099:228672..2288401622927603.4221146-CDS-D-dichotoma_M_contig1099:228672..228840Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 228673..228840 +
1690798057.879111-CDS-D-dichotoma_M_contig1099:228672..2288401690798057.879111-CDS-D-dichotoma_M_contig1099:228672..228840Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 228673..228840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1099.848.1

>prot_D-dichotoma_M_contig1099.848.1 ID=prot_D-dichotoma_M_contig1099.848.1|Name=mRNA_D-dichotoma_M_contig1099.848.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=96bp
MSIDIHVAAKNGDVAAIAEYIRNGGNLDVQDHQGNRPLHLASRHGQEESV
AALLGAGVDPSAVNSTGQTSLVFAEENGHHGCASLIQGKPLRTLR*
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mRNA from alignment at D-dichotoma_M_contig1099:227925..228840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1099.848.1 ID=mRNA_D-dichotoma_M_contig1099.848.1|Name=mRNA_D-dichotoma_M_contig1099.848.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=916bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:227925..228840+ (Dictyota dichotoma ODC1387m male)
CTCTAGTCTCGACCTCAAAGCGGGTGATGGTCGTGAAAGGCGATAGAAGA GACAAGCGTAGTTTACTAGAGTCTGTATTTGGAGTGGAGACACGCCGGGA AGGGAAGCTGTACGCTTCCGCCTAGGCCTTTAGGTGATGTCGATTGACAT CCACGTGGCAGCCAAAAATGGTGAGCACATCCAGGCAGAGATAGATGCAA CATCTCCCACTTGATGAACGGGATGGACTTTGCGTGTTTCAAGCGAGAAG GTGTAACCTCTAATAGAGTAGAATCAAATGACCACTGAGCCTAGTAACAG CTAGCTGGATCATTTGTTTGGCGTGCCCGAACAGGTGATGTCGCGGCGAT AGCAGAGTACATTCGCAATGGAGGAAATCTTGACGTACAGGATCACCAGG GAAATCGTCCTCTTCACCTGGTGAGATGCTGCTCTACTAACTCCCCGCAC CAATTGACCTCAGCTGGAGAACAGTCCCACTTCGCCAGTTCATCTAGTCT GACGTATCAAGGGTCCTTCTGATCGATTTGGTTTGGTGAGTAGGACTAAT TCGTCCCAACAGGATTTCCGCGTGGACTTCGGACTATCGTCAGAAAAAGT CAACCTTGATATCGACAAGCGCTACCGACACATGACATGTTGTCCGCGAT AGCATCGAAGCCCCAAAGAGTCCGAGTTCGTCGCATTCACAGAAACTTCT CCCCGCTCCATGCGTGTTCATGTTAAACTGTGCATCGGTTGGTGAAAGGC TTCTCGTCATGGTCAGGAGGAGTCGGTGGCTGCTCTCCTCGGTGCTGGTG TGGACCCATCGGCAGTGAACAGCACGGGGCAAACATCCCTCGTTTTCGCC GAAGAAAACGGCCATCACGGTTGTGCGAGCTTGATACAGGGCAAACCGTT GCGTACTTTAAGGTGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1099:227925..228840+

>mRNA_D-dichotoma_M_contig1099.848.1 ID=mRNA_D-dichotoma_M_contig1099.848.1|Name=mRNA_D-dichotoma_M_contig1099.848.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=576bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:227925..228840+ (Dictyota dichotoma ODC1387m male)
ATGTCGATTGACATCCACGTGGCAGCCAAAAATGATGTCGATTGACATCC
ACGTGGCAGCCAAAAATGGTGATGTCGCGGCGATAGCAGAGTACATTCGC
AATGGAGGAAATCTTGACGTACAGGATCACCAGGGAAATCGTCCTCTTCA
CCTGGTGATGTCGCGGCGATAGCAGAGTACATTCGCAATGGAGGAAATCT
TGACGTACAGGATCACCAGGGAAATCGTCCTCTTCACCTGGCTTCTCGTC
ATGGTCAGGAGGAGTCGGTGGCTGCTCTCCTCGGTGCTGGTGTGGACCCA
TCGGCAGTGAACAGCACGGGGCAAACATCCCTCGTTTTCGCCGAAGAAAA
CGGCCATCACGGTTGTGCGAGCTTGATACAGGGCAAACCGTTGCGTACTT
TAAGGTGAGCTTCTCGTCATGGTCAGGAGGAGTCGGTGGCTGCTCTCCTC
GGTGCTGGTGTGGACCCATCGGCAGTGAACAGCACGGGGCAAACATCCCT
CGTTTTCGCCGAAGAAAACGGCCATCACGGTTGTGCGAGCTTGATACAGG
GCAAACCGTTGCGTACTTTAAGGTGA
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