mRNA_D-dichotoma_M_contig1099.845.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1099.845.1
Unique NamemRNA_D-dichotoma_M_contig1099.845.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1099.845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1099contigD-dichotoma_M_contig1099:210354..210850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size497
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.9580398-UTR-D-dichotoma_M_contig1099:210353..2105201622927602.9580398-UTR-D-dichotoma_M_contig1099:210353..210520Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 210354..210520 +
1690798057.6070287-UTR-D-dichotoma_M_contig1099:210353..2105201690798057.6070287-UTR-D-dichotoma_M_contig1099:210353..210520Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1099 210354..210520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.9691908-CDS-D-dichotoma_M_contig1099:210520..2108501622927602.9691908-CDS-D-dichotoma_M_contig1099:210520..210850Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 210521..210850 +
1690798057.6165664-CDS-D-dichotoma_M_contig1099:210520..2108501690798057.6165664-CDS-D-dichotoma_M_contig1099:210520..210850Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 210521..210850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1099.845.1prot_D-dichotoma_M_contig1099.845.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1099 210521..210850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1099.845.1

>prot_D-dichotoma_M_contig1099.845.1 ID=prot_D-dichotoma_M_contig1099.845.1|Name=mRNA_D-dichotoma_M_contig1099.845.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=110bp
MKRLSSSCSFNAQHAWSPFLPLERRGTSELNRHHFGQDLMPYIDPFSIVD
PIPKDCLLNVNFSTYVWRTVEAVFLHGVIIDTITGFGAYRNAATRHPSLP
PCIPFFARI*
back to top

mRNA from alignment at D-dichotoma_M_contig1099:210354..210850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1099.845.1 ID=mRNA_D-dichotoma_M_contig1099.845.1|Name=mRNA_D-dichotoma_M_contig1099.845.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=497bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:210354..210850+ (Dictyota dichotoma ODC1387m male)
CCTCGCTCTCTGTGTCCACCCCGAAACACCTGTGCGTCGAGCATCGAAGT
TAGTAGCTCTCGTTGACATGGTAAATTTACAGTACAGTACAGTACAGTAC
AGTACAGTGCTGTAGACATCCGTGACAGTTTTATCTTGGACAGTCTAATC
CTCTACTTGAAAGATCCATGAAGAGACTGTCCAGTTCTTGTAGTTTCAAT
GCCCAGCATGCATGGTCACCTTTTCTGCCTCTTGAACGACGAGGAACGTC
AGAACTAAATCGCCATCATTTTGGCCAGGATTTGATGCCATATATAGACC
CATTTTCCATTGTCGACCCCATTCCAAAAGATTGCTTGTTAAATGTGAAT
TTCTCGACATATGTATGGCGAACGGTTGAAGCCGTGTTTCTGCACGGAGT
GATCATCGACACCATCACTGGTTTTGGTGCTTATCGCAACGCCGCCACCC
GTCACCCATCACTTCCTCCTTGCATCCCCTTCTTTGCGAGGATATAG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1099:210354..210850+

>mRNA_D-dichotoma_M_contig1099.845.1 ID=mRNA_D-dichotoma_M_contig1099.845.1|Name=mRNA_D-dichotoma_M_contig1099.845.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=660bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:210354..210850+ (Dictyota dichotoma ODC1387m male)
ATGAAGAGACTGTCCAGTTCTTGTAGTTTCAATGCCCAGCATGCATGGTC
ACCTTTTCTGCCTCTTGAACGACGAGGAACGTCAGAACTAAATCGCCATC
ATTTTGGCCAGGATTTGATGCCATATATAGACCCATTTTCCATTGTCGAC
CCCATTCCAAAAGATTGCTTGTTAAATGTGAATTTCTCGACATATGTATG
GCGAACGGTTGAAGCCGTGTTTCTGCACGGAGTGATCATCGACACCATCA
CTGGTTTTGGTGCTTATCGCAACGCCGCCACCCGTCACCCATCACTTCCT
CCTTGCATCCCCTTCTTTGCGAGGATATAGATGAAGAGACTGTCCAGTTC
TTGTAGTTTCAATGCCCAGCATGCATGGTCACCTTTTCTGCCTCTTGAAC
GACGAGGAACGTCAGAACTAAATCGCCATCATTTTGGCCAGGATTTGATG
CCATATATAGACCCATTTTCCATTGTCGACCCCATTCCAAAAGATTGCTT
GTTAAATGTGAATTTCTCGACATATGTATGGCGAACGGTTGAAGCCGTGT
TTCTGCACGGAGTGATCATCGACACCATCACTGGTTTTGGTGCTTATCGC
AACGCCGCCACCCGTCACCCATCACTTCCTCCTTGCATCCCCTTCTTTGC
GAGGATATAG
back to top