mRNA_D-dichotoma_M_contig1099.843.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1099.843.1
Unique NamemRNA_D-dichotoma_M_contig1099.843.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1099.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1099contigD-dichotoma_M_contig1099:191240..192233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size303
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1099.843.1prot_D-dichotoma_M_contig1099.843.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1099 191240..192231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.8043928-CDS-D-dichotoma_M_contig1099:191239..1912961622927602.8043928-CDS-D-dichotoma_M_contig1099:191239..191296Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 191240..191296 +
1690798057.527286-CDS-D-dichotoma_M_contig1099:191239..1912961690798057.527286-CDS-D-dichotoma_M_contig1099:191239..191296Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 191240..191296 +
1622927602.8180869-CDS-D-dichotoma_M_contig1099:191625..1917101622927602.8180869-CDS-D-dichotoma_M_contig1099:191625..191710Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 191626..191710 +
1690798057.5398698-CDS-D-dichotoma_M_contig1099:191625..1917101690798057.5398698-CDS-D-dichotoma_M_contig1099:191625..191710Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 191626..191710 +
1622927602.8360305-CDS-D-dichotoma_M_contig1099:192073..1922311622927602.8360305-CDS-D-dichotoma_M_contig1099:192073..192231Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 192074..192231 +
1690798057.5525746-CDS-D-dichotoma_M_contig1099:192073..1922311690798057.5525746-CDS-D-dichotoma_M_contig1099:192073..192231Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1099 192074..192231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1099.843.1

>prot_D-dichotoma_M_contig1099.843.1 ID=prot_D-dichotoma_M_contig1099.843.1|Name=mRNA_D-dichotoma_M_contig1099.843.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=100bp
GTETRGGLQRRRVSWKNVEVGVAFDAAEGITPKSSSDSLQGRGSVSTGHD
SCVPALFPCAIRMVTLSQTRHARVGTWRYRWYPRRHDKGTGCTHRNPRGW
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mRNA from alignment at D-dichotoma_M_contig1099:191240..192233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1099.843.1 ID=mRNA_D-dichotoma_M_contig1099.843.1|Name=mRNA_D-dichotoma_M_contig1099.843.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=994bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:191240..192233+ (Dictyota dichotoma ODC1387m male)
GGTACGGAAACACGCGGCGGGCTGCAGCGGAGGAGAGTCAGCTGGAAGAA
CGTAGAGGTCAAGTGACTAGACACATAATTTACATGAATCTAAGCATTAG
AATCGCCGCAAATTCGCCGACAAACAACAGAGAGACAGATGTAGTACCGA
TATGTAGCAACGTCTCGCTCTGTGATGGCAAGTGGGTATCTCATTTCCCA
TCACTCCTAAACTGACGTGAATCATCACACAATGAACGCTATTCTTGCTA
TCGATCGAATGTACTAATGGTCTCGTTTCCCAAGGCATGCATGACGATGG
TATCCAATCCGCGTGTACGTCACCAAGATCCACTTCGGTGTTATGCACGT
GAAAATGGACTGTTTCCCCTCGACACGAGTGATCAGGTGGGCGTAGCTTT
CGATGCTGCGGAGGGCATCACACCGAAATCTTCAAGTGATTCTCTACAAG
GAAGGGGATCGGTCTCGACAGGTGCTCTGGCCGGGTGCTCCAGGATCAGA
TGTTGTCCAGCTAGAGATCTGCGGAACAACGGGTGCAACCACTTGAGTTG
AAACCACTGTCACCCCGACCACCCTTCTTCGTGTTTTTGCTTAGTTCTCG
CCTAGGTCAGTATCGGCTTAACTGTGGACCGCATAATAACGAGCATCTGA
TGAGACATGAATGAAGAAATACTCCTCACATCAAAGTAGGATATATTTCA
GCATCACCTCTGCCGGGACTCGGCGATCTACTACTCCCCCCCCACAGCGA
AGTCCGATCCACTTCGGAAACAACAGTCCCATAACACTCCCATGCCGTCG
AATCCACCTTCTCCATGCCCTTCGATGTCCGCAGGTCACGATTCCTGTGT
GCCTGCATTATTCCCATGCGCAATCCGAATGGTTACCCTTTCTCAAACGC
GTCATGCACGAGTTGGAACTTGGAGGTATCGATGGTATCCACGAAGACAT
GACAAGGGCACCGGTTGCACGCATCGCAACCCTCGTGGATGGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1099:191240..192233+

>mRNA_D-dichotoma_M_contig1099.843.1 ID=mRNA_D-dichotoma_M_contig1099.843.1|Name=mRNA_D-dichotoma_M_contig1099.843.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=600bp|location=Sequence derived from alignment at D-dichotoma_M_contig1099:191240..192233+ (Dictyota dichotoma ODC1387m male)
GGTACGGAAACACGCGGCGGGCTGCAGCGGAGGAGAGTCAGCTGGAAGAA
CGTAGAGGGTACGGAAACACGCGGCGGGCTGCAGCGGAGGAGAGTCAGCT
GGAAGAACGTAGAGGTGGGCGTAGCTTTCGATGCTGCGGAGGGCATCACA
CCGAAATCTTCAAGTGATTCTCTACAAGGAAGGGGATCGGTCTCGACAGG
TGGGCGTAGCTTTCGATGCTGCGGAGGGCATCACACCGAAATCTTCAAGT
GATTCTCTACAAGGAAGGGGATCGGTCTCGACAGGTCACGATTCCTGTGT
GCCTGCATTATTCCCATGCGCAATCCGAATGGTTACCCTTTCTCAAACGC
GTCATGCACGAGTTGGAACTTGGAGGTATCGATGGTATCCACGAAGACAT
GACAAGGGCACCGGTTGCACGCATCGCAACCCTCGTGGATGGGTCACGAT
TCCTGTGTGCCTGCATTATTCCCATGCGCAATCCGAATGGTTACCCTTTC
TCAAACGCGTCATGCACGAGTTGGAACTTGGAGGTATCGATGGTATCCAC
GAAGACATGACAAGGGCACCGGTTGCACGCATCGCAACCCTCGTGGATGG
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