mRNA_D-dichotoma_M_contig1098.840.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1098.840.1
Unique NamemRNA_D-dichotoma_M_contig1098.840.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1098.840.1 vs. uniprot
Match: D7FK46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.210e-46
Identity = 97/218 (44.50%), Postives = 125/218 (57.34%), Query Frame = 3 
Query:  147 VCFSGHVRSFVYPVVHHSARRHLVDALAKKNGCRVDVFAYATLSDDMASFKTESGEN-EFTPSVENVKRAFDVLQPTRVVWHQDMTGIIPNDCQQETTPGQFSSNPDHRHGRKGKKSGKIEETTTNKNGHDEIEHSRRWWHEHGGEATESLYWQLYKSLAAFRMAKLKEESE---GFQYDWVVRTRFDLVWFRPFPSLRSFGHDAVWLGADFW*IATH 788
            +CFSG +RSFV+P VH S R +L++++ K +GC VDVFAY T  D +   K +  EN EFTP+  +V+ A  VL+PTR++WHQD  GIIPN C      G  +     RH  +                     H   W   +  EA+ SLYWQLYKSLAA+RMA L+EE     GF YDWV+R R D+ W RP P LRSF   AVW G  +W ++ H
Sbjct:    1 MCFSGAIRSFVHPAVHRSIRTNLIESI-KADGCEVDVFAYVTREDTVV--KAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGCA-----GVNNRTDASRHSAR---------------------HLWYWEQRYSPEASRSLYWQLYKSLAAYRMA-LREEKRIGSGFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDH 188
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BLAST of mRNA_D-dichotoma_M_contig1098.840.1 vs. uniprot
Match: A0A6H5KVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 4.830e-38
Identity = 91/243 (37.45%), Postives = 128/243 (52.67%), Query Frame = 3 
Query:  135 CRIAVCFSGHVRSFVYPVVHHSARRHLVDALAKKNGCRVDVFAYATLSDDMASFKTESGENEFTPSVENVKRAFDVLQPTRVVWHQDMTGIIPNDCQ-----------QETTPGQF-SSNPDHRHGRKGKKSGKIEETTTNKNGHDEIEHSRRWWHEHGGEATESLYWQLYKSLAAFRMAKLKEESE-------------GFQYDWVVRTRFDLVWFRPFPSLRSFGHDAVWLGADFW*IATH 788
            C +AV  SG VRSFV PVVH S +RH+V+A+ K  GC VDVF YA+L D+      +  E +   ++ N++   + L PT++VWHQ+  GIIPN C+            E  P  F SSN  +   + G   G  +  +    GH   E S+    E     +E  YWQLY+SLAA+R+A  +E+ +               +YDW+V TRFD+ W    PSLR+F  D VW  A  W ++T+
Sbjct:   38 CAVAVSISGDVRSFVDPVVHLSFQRHVVEAI-KAEGCTVDVFVYASLGDE------DLLEEQDAETIRNIEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEARPSSFASSNAANAKPKGGNVGG--DNRSNQPRGHVSKEPSKPPGREQFSTRSERFYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKNSVPSLRAFSRDVVWFAAKSWPMSTN 271
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BLAST of mRNA_D-dichotoma_M_contig1098.840.1 vs. uniprot
Match: D7G5E2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E2_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.140e-37
Identity = 90/249 (36.14%), Postives = 129/249 (51.81%), Query Frame = 3 
Query:  126 PETCRIAVCFSGHVRSFVYPVVHHSARRHLVDALAKKNGCRVDVFAYATLSDDMASFKTESGENEFTPSVENVKRAFDVLQPTRVVWHQDMTGIIPNDCQ-----------QETTPGQF--SSNPDHRHGRKGKKSGKI--EETTTNKNGHDEIEHSRRWWHEHGGEATESLYWQLYKSLAAFRMAKLKEESE-------------GFQYDWVVRTRFDLVWFRPFPSLRSFGHDAVWLGADFW*IATH 788
            P  C +AV  SG VRSFV PV+H S RRH+V+A+ K  GC VDVF YA+L D+    + ++       ++ N++   + L PT++VWHQ+  GIIPN C+            E  P  F  SS P+ R        G +  +  +    GH   E S+    E     +E  YWQLY+SLAA+R+A  +E+ +               +YDW+V TRFD+ W +  PS R+F  D VW  A  W ++T+
Sbjct:   36 PPPCAVAVSISGDVRSFVDPVLHRSFRRHVVEAI-KAEGCTVDVFVYASLGDEDLLVEQDA------ETIRNIEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEAQPSSFAESSVPNAR-----PTGGNVGGDNRSNQPRGHASKEPSKPPSREQFSTRSERFYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKKSLPSFRAFSRDVVWFAAKSWPMSTN 272
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BLAST of mRNA_D-dichotoma_M_contig1098.840.1 vs. uniprot
Match: D8LCA5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.780e-11
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  129 ETCRIAVCFSGHVRSFVYPVVHHSARRHLVDALAKKNGCRVDVFAYATLSDDM------ASFKTESGENEFTPSVENVKRAFDVLQPTRVVWHQDMTGIIPNDCQ 425
            E+CR AV +SGHVRSFV P VH S +++L++ L  +  C VDVF + ++ D++        F+        TP    V+ A  +L P  + +HQ+  G IPN C+
Sbjct:   35 ESCRCAVLYSGHVRSFVQPRVHLSHKKNLIEQL--EIDCHVDVFMHISVEDEVPRRYRKGDFEDALAFTPHTPQETEVEHAVGLLNPLSIEYHQEQAGYIPNGCE 137
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1098.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK46_ECTSI1.210e-4644.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVJ6_9PHAE4.830e-3837.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5E2_ECTSI2.140e-3736.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCA5_ECTSI1.780e-1137.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1098contigD-dichotoma_M_contig1098:195892..197009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue2.1e-33
Seed eggNOG ortholog2880.D7G5E2
EggNOG OGs2CY2I@1,2S1H1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size825
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1098.840.1prot_D-dichotoma_M_contig1098.840.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1098 195941..196968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.542377-UTR-D-dichotoma_M_contig1098:195891..1959401622927602.542377-UTR-D-dichotoma_M_contig1098:195891..195940Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1098 195892..195940 -
1690798057.4220843-UTR-D-dichotoma_M_contig1098:195891..1959401690798057.4220843-UTR-D-dichotoma_M_contig1098:195891..195940Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1098 195892..195940 -
1622927602.5763152-UTR-D-dichotoma_M_contig1098:196968..1970091622927602.5763152-UTR-D-dichotoma_M_contig1098:196968..197009Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1098 196969..197009 -
1690798057.462323-UTR-D-dichotoma_M_contig1098:196968..1970091690798057.462323-UTR-D-dichotoma_M_contig1098:196968..197009Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1098 196969..197009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927602.5547428-CDS-D-dichotoma_M_contig1098:195940..1964141622927602.5547428-CDS-D-dichotoma_M_contig1098:195940..196414Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1098 195941..196414 -
1690798057.4367952-CDS-D-dichotoma_M_contig1098:195940..1964141690798057.4367952-CDS-D-dichotoma_M_contig1098:195940..196414Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1098 195941..196414 -
1622927602.564945-CDS-D-dichotoma_M_contig1098:196707..1969681622927602.564945-CDS-D-dichotoma_M_contig1098:196707..196968Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1098 196708..196968 -
1690798057.4499528-CDS-D-dichotoma_M_contig1098:196707..1969681690798057.4499528-CDS-D-dichotoma_M_contig1098:196707..196968Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1098 196708..196968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1098.840.1

>prot_D-dichotoma_M_contig1098.840.1 ID=prot_D-dichotoma_M_contig1098.840.1|Name=mRNA_D-dichotoma_M_contig1098.840.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=245bp
MRFIVIPFLSAVGVRFGFAGRRDNLHKEPETCRIAVCFSGHVRSFVYPVV
HHSARRHLVDALAKKNGCRVDVFAYATLSDDMASFKTESGENEFTPSVEN
VKRAFDVLQPTRVVWHQDMTGIIPNDCQQETTPGQFSSNPDHRHGRKGKK
SGKIEETTTNKNGHDEIEHSRRWWHEHGGEATESLYWQLYKSLAAFRMAK
LKEESEGFQYDWVVRTRFDLVWFRPFPSLRSFGHDAVWLGADFW*
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mRNA from alignment at D-dichotoma_M_contig1098:195892..197009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1098.840.1 ID=mRNA_D-dichotoma_M_contig1098.840.1|Name=mRNA_D-dichotoma_M_contig1098.840.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1118bp|location=Sequence derived from alignment at D-dichotoma_M_contig1098:195892..197009- (Dictyota dichotoma ODC1387m male)
GATGGATCGGCAGCTAGATCCTGTGGCTTAAGTGGTAGACCATGAGATTT
ATCGTGATTCCTTTCCTGAGTGCCGTTGGGGTGAGATTCGGGTTCGCGGG
TAGAAGGGATAACCTACACAAGGAACCCGAGACCTGCCGAATAGCTGTGT
GCTTCTCTGGGCATGTTCGATCTTTTGTGTACCCCGTCGTGCACCACTCC
GCCCGGCGGCATCTTGTGGACGCTCTGGCCAAGAAAAATGGGTGCCGAGT
AGATGTTTTCGCCTACGCTACGTTGTCAGATGACATGGCGAGCTTCAAGA
CGGTGAGTTAGCCTTGCCACCATCACATTGTTGACGCGGTGCTGTTCAGG
CGTGGCATCCTGTTTTGACACGCACAGGTCAACACGCCCGATGAACCTCA
TCCTATCGACTTCCAGAGTCTCTATGCCATCGATCATATACTGTCCACGT
AGCGCGGCGACGCACAGCTCATTCACTGCCATTCCTTTTGGAAAAGAGAG
TATGCTCTATTGCATGGAGAGGAGGTGCTCCTTGAACAGCATTCCCTTTA
CGTGAGCTTGAGCCTCATGTCCTCCGTGGGCTGCTTTCAACGCAGGAAAG
CGGTGAAAACGAGTTCACTCCGAGTGTGGAGAACGTCAAAAGGGCATTTG
ATGTCCTTCAGCCAACCAGGGTGGTGTGGCATCAAGACATGACGGGAATA
ATTCCCAACGACTGTCAACAGGAAACAACCCCAGGGCAATTTTCCAGTAA
TCCTGATCATAGACACGGCAGGAAGGGGAAGAAGAGTGGAAAGATCGAAG
AGACCACCACAAACAAGAATGGCCACGACGAAATCGAGCACAGCCGCAGG
TGGTGGCATGAACATGGAGGTGAAGCCACGGAGAGCCTCTACTGGCAGCT
GTACAAATCCCTCGCAGCATTTCGCATGGCCAAGCTGAAGGAAGAGAGTG
AGGGATTCCAATACGACTGGGTGGTGCGGACGCGGTTCGACTTGGTCTGG
TTTCGACCCTTCCCATCGCTTCGGTCGTTCGGCCACGACGCTGTGTGGCT
GGGGGCTGATTTCTGGTGAATCGCTACTCACAACAACAACAATGAGTACT
GTAAATCCAGAGTAAGGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1098:195892..197009-

>mRNA_D-dichotoma_M_contig1098.840.1 ID=mRNA_D-dichotoma_M_contig1098.840.1|Name=mRNA_D-dichotoma_M_contig1098.840.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1470bp|location=Sequence derived from alignment at D-dichotoma_M_contig1098:195892..197009- (Dictyota dichotoma ODC1387m male)
ATGAGATTTATCGTGATTCCTTTCCTGAGTGCCGTTGGGGTGAGATTCGG
GTTCGCGGGTAGAAGGGATAACCTACACAAGGAACCCGAGACCTGCCGAA
TAGCTGTGTGCTTCTCTGGGCATGTTCGATCTTTTGTGTACCCCGTCGTG
CACCACTCCGCCCGGCGGCATCTTGTGGACGCTCTGGCCAAGAAAAATGG
GTGCCGAGTAGATGTTTTCGCCTACGCTACGTTGTCAGATGACATGGCGA
GCTTCAAGACGATGAGATTTATCGTGATTCCTTTCCTGAGTGCCGTTGGG
GTGAGATTCGGGTTCGCGGGTAGAAGGGATAACCTACACAAGGAACCCGA
GACCTGCCGAATAGCTGTGTGCTTCTCTGGGCATGTTCGATCTTTTGTGT
ACCCCGTCGTGCACCACTCCGCCCGGCGGCATCTTGTGGACGCTCTGGCC
AAGAAAAATGGGTGCCGAGTAGATGTTTTCGCCTACGCTACGTTGTCAGA
TGACATGGCGAGCTTCAAGACGGAAAGCGGTGAAAACGAGTTCACTCCGA
GTGTGGAGAACGTCAAAAGGGCATTTGATGTCCTTCAGCCAACCAGGGTG
GTGTGGCATCAAGACATGACGGGAATAATTCCCAACGACTGTCAACAGGA
AACAACCCCAGGGCAATTTTCCAGTAATCCTGATCATAGACACGGCAGGA
AGGGGAAGAAGAGTGGAAAGATCGAAGAGACCACCACAAACAAGAATGGC
CACGACGAAATCGAGCACAGCCGCAGGTGGTGGCATGAACATGGAGGTGA
AGCCACGGAGAGCCTCTACTGGCAGCTGTACAAATCCCTCGCAGCATTTC
GCATGGCCAAGCTGAAGGAAGAGAGTGAGGGATTCCAATACGACTGGGTG
GTGCGGACGCGGTTCGACTTGGTCTGGTTTCGACCCTTCCCATCGCTTCG
GTCGTTCGGCCACGACGCTGTGTGGCTGGGGGCTGATTTCTGGTGAGAAA
GCGGTGAAAACGAGTTCACTCCGAGTGTGGAGAACGTCAAAAGGGCATTT
GATGTCCTTCAGCCAACCAGGGTGGTGTGGCATCAAGACATGACGGGAAT
AATTCCCAACGACTGTCAACAGGAAACAACCCCAGGGCAATTTTCCAGTA
ATCCTGATCATAGACACGGCAGGAAGGGGAAGAAGAGTGGAAAGATCGAA
GAGACCACCACAAACAAGAATGGCCACGACGAAATCGAGCACAGCCGCAG
GTGGTGGCATGAACATGGAGGTGAAGCCACGGAGAGCCTCTACTGGCAGC
TGTACAAATCCCTCGCAGCATTTCGCATGGCCAAGCTGAAGGAAGAGAGT
GAGGGATTCCAATACGACTGGGTGGTGCGGACGCGGTTCGACTTGGTCTG
GTTTCGACCCTTCCCATCGCTTCGGTCGTTCGGCCACGACGCTGTGTGGC
TGGGGGCTGATTTCTGGTGA
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