mRNA_D-dichotoma_M_contig1090.789.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1090.789.1
Unique NamemRNA_D-dichotoma_M_contig1090.789.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.640e-63
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMRQ 348
            AAKTAIIIAKQEQDLGNYK+AHGILFETIRQLEDQGIHVPQSLRRSFVLLHSY LVKKMV+RGDHEGAARMLLRVARSISRFP HIVPVLTSTVIECQR+GLRNSAFEYAS LMRQ
Sbjct: 1205 AAKTAIIIAKQEQDLGNYKVAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQ 1320          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.670e-63
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMRQ 348
            AAKTAIIIAKQEQDLGNYK+AHGILFETIRQLEDQGIHVPQ+LRRSFVLLHSY LVKKMV+RGDHEGAARMLLRVARSISRFP HIVPVLTSTVIECQR+GLRNSAFEYAS LMRQ
Sbjct:  584 AAKTAIIIAKQEQDLGNYKVAHGILFETIRQLEDQGIHVPQALRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYASTLMRQ 699          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.230e-49
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMR 345
            AAKTAIIIA+QEQDLGNY+ AH +L+E IR+LEDQ   VPQ+LRR F+LLHSYTL K++ +RG+HEGAARMLLRVARS SRFPAH V VLTS VIECQR GLR SAFEYASVLMR
Sbjct: 1256 AAKTAIIIARQEQDLGNYREAHAVLYEAIRRLEDQRARVPQALRRPFLLLHSYTLAKRLARRGEHEGAARMLLRVARSASRFPAHTVAVLTSCVIECQRAGLRESAFEYASVLMR 1370          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: A0A812W5W2_SYMMI (WDR19 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W5W2_SYMMI)

HSP 1 Score: 172 bits (437), Expect = 1.820e-48
Identity = 80/115 (69.57%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMR 345
            AAKTA II++QEQD+GNY +AHG++ ETIR+LED GI VP  LR  FVLLHSY +VK++VKRGDH GAARMLLRVA S+S+FP H+VP+LTSTV+ECQR GL+ S++EYA++LMR
Sbjct:  486 AAKTAAIISRQEQDMGNYSLAHGVVTETIRKLEDDGIRVPSQLRSHFVLLHSYLIVKRLVKRGDHTGAARMLLRVAESVSKFPQHLVPILTSTVVECQRAGLKASSYEYAAMLMR 600          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: A0A7S1CDP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDP1_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.100e-46
Identity = 83/115 (72.17%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMR 345
            A KTAIII++QEQ+LGNYK+AH ILFET + LE Q I VPQ+L RS  LLHSY LVKK+VK+ +HE AARML+RVA+ IS+FP+HIVP+LTSTVIECQR GL+ SAFEYAS+LMR
Sbjct: 1146 AGKTAIIISRQEQELGNYKVAHSILFETHKDLEAQNIRVPQALARSLRLLHSYILVKKLVKQNNHEAAARMLIRVAKHISKFPSHIVPILTSTVIECQRAGLKRSAFEYASMLMR 1260          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: F0YFC0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFC0_AURAN)

HSP 1 Score: 169 bits (428), Expect = 2.100e-46
Identity = 82/115 (71.30%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMR 345
            AAKTA+IIA+QEQDLG+YK AH IL+ET  QLE Q +HVPQ+LR+ F+LLHSY LVKK++K GDH+ AARMLLRVA+SIS+FP+H  P+LTSTVIECQR GL+ SA EYA+ LMR
Sbjct: 1151 AAKTAVIIARQEQDLGSYKAAHAILYETTIQLEAQEVHVPQNLRKPFILLHSYLLVKKLIKAGDHDAAARMLLRVAKSISKFPSHGAPILTSTVIECQRAGLKASAHEYATQLMR 1265          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: A0A7S4I7Q7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I7Q7_9EUKA)

HSP 1 Score: 159 bits (401), Expect = 4.880e-46
Identity = 78/115 (67.83%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMR 345
            AAKTAIIIA+QEQ+LGNY++AH ILF+T ++L  Q I VPQ L  + +LLHSY LVK +VK GDH  AARML RVAR+IS+FP H+VP++TSTVIEC R GLR +AFEYAS+LMR
Sbjct:   37 AAKTAIIIARQEQELGNYRVAHQILFDTHKELTAQKIRVPQELAHNLMLLHSYVLVKPLVKVGDHLAAARMLSRVARNISKFPMHVVPIITSTVIECHRAGLRGAAFEYASMLMR 151          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: A0A7S2CHE3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHE3_9STRA)

HSP 1 Score: 162 bits (411), Expect = 5.300e-45
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMR 345
            AAKTAIIIA+QEQDLG Y+ AH I++ETIRQL+DQ + VPQSLRR F LLHSY LVKK++K  +HEGAARMLLRVA++IS+FP H VP+LTSTVIE  R G + SA EYA +LMR
Sbjct:  307 AAKTAIIIARQEQDLGKYRQAHSIIYETIRQLQDQKVRVPQSLRRPFTLLHSYILVKKLIKHQNHEGAARMLLRVAKNISKFPNHKVPILTSTVIESFRAGRKQSALEYAKMLMR 421          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: A0A7S0E2L9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2L9_9CRYP)

HSP 1 Score: 163 bits (413), Expect = 2.200e-44
Identity = 77/115 (66.96%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMR 345
            AA+TA+IIA+QEQ+LGNYK+AH +LF+T + L+ QGI VP+ L+ S +LLHSY LVK +VK+GDHE  ARML+RV+ SIS+FPAH+VP+LTSTVIECQR GLR ++FE+AS+LMR
Sbjct: 1114 AARTAVIIARQEQELGNYKVAHKMLFDTYQDLQGQGIPVPRELQDSLLLLHSYVLVKVLVKQGDHEAGARMLVRVSNSISKFPAHVVPILTSTVIECQRGGLRKTSFEFASMLMR 1228          
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Match: A0A7S3B2K5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B2K5_9EUKA)

HSP 1 Score: 155 bits (391), Expect = 3.320e-44
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRTGLRNSAFEYASVLMR 345
            AAKTA+II++QEQ+LGNY++AH ILF+T ++L  Q I VPQ +  + +LLHSY LVK + K GDH  AARML+RVAR+IS+FP H+VP++TSTVIEC R GLR  AFEYAS+LMR
Sbjct:   67 AAKTAVIISRQEQELGNYRVAHQILFDTHKELTAQKIRVPQEMAHNLMLLHSYVLVKPLSKMGDHLSAARMLVRVARNISKFPMHVVPIVTSTVIECHRAGLRGMAFEYASMLMR 181          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1090.789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK0_ECTSI1.640e-6394.83WD repeat membrane protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5KE11_9PHAE1.670e-6393.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAW6_9STRA1.230e-4977.39WD repeat membrane protein n=1 Tax=Tribonema minus... [more]
A0A812W5W2_SYMMI1.820e-4869.57WDR19 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S1CDP1_9STRA2.100e-4672.17Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
F0YFC0_AURAN2.100e-4671.30Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4I7Q7_9EUKA4.880e-4667.83Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2CHE3_9STRA5.300e-4570.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0E2L9_9CRYP2.200e-4466.96Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S3B2K5_9EUKA3.320e-4464.35Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1090contigD-dichotoma_M_contig1090:33561..34557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue8e-55
Seed eggNOG ortholog2880.D7FIK0
Preferred nameFAP66
KEGG koko:K19671
EggNOG free text desc.myotome development
EggNOG OGsKOG2247@1,KOG2247@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size352
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1090.789.1prot_D-dichotoma_M_contig1090.789.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1090 33561..34556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927594.5777209-CDS-D-dichotoma_M_contig1090:33560..336171622927594.5777209-CDS-D-dichotoma_M_contig1090:33560..33617Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1090 33561..33617 +
1690798053.6677382-CDS-D-dichotoma_M_contig1090:33560..336171690798053.6677382-CDS-D-dichotoma_M_contig1090:33560..33617Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1090 33561..33617 +
1622927594.5893486-CDS-D-dichotoma_M_contig1090:33825..339331622927594.5893486-CDS-D-dichotoma_M_contig1090:33825..33933Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1090 33826..33933 +
1690798053.6815658-CDS-D-dichotoma_M_contig1090:33825..339331690798053.6815658-CDS-D-dichotoma_M_contig1090:33825..33933Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1090 33826..33933 +
1622927594.6005301-CDS-D-dichotoma_M_contig1090:34370..345561622927594.6005301-CDS-D-dichotoma_M_contig1090:34370..34556Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1090 34371..34556 +
1690798053.6887493-CDS-D-dichotoma_M_contig1090:34370..345561690798053.6887493-CDS-D-dichotoma_M_contig1090:34370..34556Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1090 34371..34556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1090.789.1

>prot_D-dichotoma_M_contig1090.789.1 ID=prot_D-dichotoma_M_contig1090.789.1|Name=mRNA_D-dichotoma_M_contig1090.789.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=117bp
AAKTAIIIAKQEQDLGNYKIAHGILFETIRQLEDQGIHVPQSLRRSFVLL
HSYTLVKKMVKRGDHEGAARMLLRVARSISRFPAHIVPVLTSTVIECQRT
GLRNSAFEYASVLMRQA
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mRNA from alignment at D-dichotoma_M_contig1090:33561..34557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1090.789.1 ID=mRNA_D-dichotoma_M_contig1090.789.1|Name=mRNA_D-dichotoma_M_contig1090.789.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=997bp|location=Sequence derived from alignment at D-dichotoma_M_contig1090:33561..34557+ (Dictyota dichotoma ODC1387m male)
GCTGCGAAGACCGCCATCATCATCGCGAAGCAGGAGCAAGACCTGGGCAA CTACAAGGTGAGAGGGACGTACCGTTGCTCGATCGGGTGTTGTGTAAGGA GTTTCGGGGTAAGTGTTCCCGCTGCTTCACTGCCAACACTGGGCTCGACG GAAGGGAATACTATATGCTTCGTTGACGCCGCGGTTCTCTTGCCGACCCC TGACGACCTCTGACGACCCCTGACGACCCCTGACGACTTCTGCCGACCCC GTCGATGAGGAATAGATAGCGCACGGGATACTCTTCGAAACGATTCGGCA GCTGGAAGACCAAGGCATACACGTACCGCAGTCCCTCCGGAGGAGTTTTG TTCTCCTCCATAGCTACACACTGGTAAGACTCAGAGATATCCGTGGTTGC GGTGCGTGATGGGCCGGGCGCTAGTCATGCTCTCTCGTTGAGGTTTCGTT CTTTCACTTGCCGTTTCGTCCGGCCAAGGTAGGGTGCCTTTGGCAAAGAG GACAACAATGACACGGGAATCCCCGAAGGCATCCCATCGTCCGAGCTCTG CAGGACTGGAGACGTGCTTCTTCCTGTTCCGGCGTTTCAGTCTTGGATCC TTCTGCGGCTTGCAAATCCTTTCGCGAAGCACCATGCGTCCCAAGAGCGA GGTCATGTTCCATCACGTTGAAGGGTGTCCACTCCCCGCCTTGTTTCCCC CCCGAAGGTATCTGTTAAGCAGCTTGCTGTTTTTGAGGTTCATCCTCCCG ATGTTTGTCTCCCCCGCCCGCCCCTGAAATCCATCCAATGATTCCACCCG ACCAACGCAGGTCAAGAAGATGGTCAAGAGGGGCGACCACGAGGGCGCCG CGCGCATGCTCCTTCGGGTCGCGCGCAGCATCTCCAGGTTCCCCGCGCAC ATCGTTCCCGTGCTGACATCCACCGTCATCGAGTGCCAGCGCACCGGCCT TCGCAATTCCGCGTTCGAGTACGCATCCGTCCTCATGCGACAGGCGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1090:33561..34557+

>mRNA_D-dichotoma_M_contig1090.789.1 ID=mRNA_D-dichotoma_M_contig1090.789.1|Name=mRNA_D-dichotoma_M_contig1090.789.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=702bp|location=Sequence derived from alignment at D-dichotoma_M_contig1090:33561..34557+ (Dictyota dichotoma ODC1387m male)
GCTGCGAAGACCGCCATCATCATCGCGAAGCAGGAGCAAGACCTGGGCAA
CTACAAGGCTGCGAAGACCGCCATCATCATCGCGAAGCAGGAGCAAGACC
TGGGCAACTACAAGATAGCGCACGGGATACTCTTCGAAACGATTCGGCAG
CTGGAAGACCAAGGCATACACGTACCGCAGTCCCTCCGGAGGAGTTTTGT
TCTCCTCCATAGCTACACACTGATAGCGCACGGGATACTCTTCGAAACGA
TTCGGCAGCTGGAAGACCAAGGCATACACGTACCGCAGTCCCTCCGGAGG
AGTTTTGTTCTCCTCCATAGCTACACACTGGTCAAGAAGATGGTCAAGAG
GGGCGACCACGAGGGCGCCGCGCGCATGCTCCTTCGGGTCGCGCGCAGCA
TCTCCAGGTTCCCCGCGCACATCGTTCCCGTGCTGACATCCACCGTCATC
GAGTGCCAGCGCACCGGCCTTCGCAATTCCGCGTTCGAGTACGCATCCGT
CCTCATGCGACAGGCGGTCAAGAAGATGGTCAAGAGGGGCGACCACGAGG
GCGCCGCGCGCATGCTCCTTCGGGTCGCGCGCAGCATCTCCAGGTTCCCC
GCGCACATCGTTCCCGTGCTGACATCCACCGTCATCGAGTGCCAGCGCAC
CGGCCTTCGCAATTCCGCGTTCGAGTACGCATCCGTCCTCATGCGACAGG
CG
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