mRNA_D-dichotoma_M_contig1087.746.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1087.746.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI) HSP 1 Score: 280 bits (717), Expect = 2.480e-74 Identity = 307/695 (44.17%), Postives = 372/695 (53.53%), Query Frame = 2
Query: 479 PLELSLRECSLGDVGVASLAESSWFCGSEGVKVLSLRHNQLTASGSRALFASLRELSE--DVLSCLQLDFNPLGDAGVQPLPAYLKQRATQGCGELEELSLRFCGVGPAGCRYLSSALIKSAASASSAQGP----PMSGCAPTSGSGKDVSSGSAGEEWKSSREQGNN--LRP--SAGIGRLLLTGN-RLGDDGARSLASALKKDRSLKVLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKLVGDGPGTLEILEXXXXXXXXXXXXXXXKGLEINGARDRSTAQGKGLLRLGLAGNS-------------------IGWAGGCALAKSLSGRRGRAPELRELELAGNKLTLTAAKTSHGSTSSSLYKSAGGAITSLLNQLVDEAYLRGDAPSSSPSPGSISGILSTAPTNSRGSPDKGYASGSGPRCGVLALGAAIRQPG---------------GSPSLRKIGLARTGITKVEASKLARALRQRPAESPLEDVEIGMNGLHAKVMRDVRSAVEDRSALTSGTPTARLGSRSRERNDAPSEETQGSEEGSSQEPCRRRRPRTRSVDGKNSLGKHGERLSGGIGSQDRMVGRSRR-KATGDPHGEQQDFDGEAKRHAVVKKYVPPAEGKVELRVFGRKVASFGEA--SERKDLGIDVEVFGKRARF----GSPSSARSSSS 2407
P LSLRECSLGD+GVA +A S W G GV+ LSLR NQ+TA+G RAL SLR ++ D L+CL+LDFNP+GDAG QPLPAYLK+RA +G G LEELSLRFC +GPAG YLSSAL+KSAA+A A P S T+G ++ G L P ++GI RLLLTGN RLGD GA++LASALKKD SL+VLDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G LE LE GL G +R + G + G++ G G L ELELAGN LTL+A++ + + SSSLYKSAGGA++SLL VDE+Y G+ S + GS+ + P S G+P G A RC V LG A+ G G PSL+ +GLARTG+T+ +A++LA ALR RP +SPLE+VE+G+NGL K +R AVE PTA S +D +G R P VD G+ RSRR AT P E+ + R A V +YVPP G VEL +FG+K ASF +A S R+ +DVEVFGKR RF GSP S R SS
Sbjct: 76 PSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAG--YLSSALLKSAAAAKIAANDDANSPASEAPTTAGXXXXXXXXXXXXXXXXXKKGGAEVVLPPPVASGIRRLLLTGNDRLGDAGAKALASALKKDNSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGLV--GGNNRGGRRXXGASKQGISSRRGPGLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGVV--LEELELAGNALTLSASQAAAQAKSSSLYKSAGGALSSLLTTFVDESYYGGN----SNNRGSVQDASALTPP-SLGNPAGGVAERP-LRCAVAELGEALAGQGARGXXXXXXXXXXXXGCPSLKAVGLARTGLTERDAARLAAALRARPVDSPLEEVEVGLNGLSVKAAEAIRLAVES--------PTAPHDRSSSFVDDLEKNGGRGRXXXXXXXXXXRHDPAAPGVD------------EPGL--------RSRRGTATAAPAEER------SARGAEVGEYVPPG-GSVELGLFGKKFASFQQAGGSGRE---LDVEVFGKRVRFERTGGSPPSPRPGSS 720
BLAST of mRNA_D-dichotoma_M_contig1087.746.1 vs. uniprot
Match: A0A6H5JEB8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB8_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.590e-47 Identity = 125/227 (55.07%), Postives = 148/227 (65.20%), Query Frame = 2
Query: 443 ADVVAEVGHSKLP------LELSLRECSLGDVGVASLAESSWFCGSEGVKVLSLRHNQLTASGSRALFASLRELSE--DVLSCLQLDFNPLGDAGVQPLPAYLKQRATQGCGELEELSLRFCGVGPAGCRYLSSALIKSAASAS-SAQGPPMSGCAPTSGSGKDVSSGSAGEEW---KSSREQGNNLRPSAGIGRLLLTGN-RLGDDGARSLASALKKDRSLKVLDL 1084
A VV E H + P LSLRECSLGD+GVA +A S W G GV+ LSLR NQ+TA+G RAL SLR ++ D L+CL+LDFNP+GDAG QPLPAYLK+RA +G G LEELSLRFC +GPAGCRYLSSAL+KSAA+A SA P + K E G ++GI RLLLTGN R+GD GA++LASALKKD SL+VLDL
Sbjct: 111 AGVVEEGQHHRYPDTNSPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSAADSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKISANDDPNNSAXXXXXXXXXXXXXXXXXXXXXXKGGAEFGLPPPAASGIRRLLLTGNDRIGDAGAKALASALKKDSSLQVLDL 337
BLAST of mRNA_D-dichotoma_M_contig1087.746.1 vs. uniprot
Match: A0A835Z931_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z931_9STRA) HSP 1 Score: 129 bits (325), Expect = 4.010e-27 Identity = 173/440 (39.32%), Postives = 216/440 (49.09%), Query Frame = 2
Query: 311 IDLSFCHIGIDGIPSLLHFLSQRKSTRCEGLTAKDVAERSPTREADVVAEVGHSKLPLELSLRECSLGDVGVASLAESSWFCGSEGVKVLSLRHNQLTASGSRALFASLRELSEDVLSCLQLDFNPLGDAGVQPLPAYLKQRATQGCGELEELSLRFCGVGPAGCRYLSSALIKSAASASSAQGPPMSGCAPTSGSGKDVSSGSAGEEWKSSREQGNNLRPSAGIGRLLLTGNRLGDDGARSLASALKKDRSLKVLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKLVGDGPGTLEILEXXXXXXXXXXXXXXXKGLEINGARD---RSTAQGKGL----LRLGLAGNSIGWAGGCALAKSLSGRRGRAPELRELELAGNKLTLTAAKTSHGSTSSS---LYKSAGGAITSL---LNQLVDEAYL 1591
IDLSF H+G G +L LS+ S P L L+ECSLGD G + S+ EGV VLSLRHN + GSR+L LR + D L L LDFN +GDAG+QPLPA LK + G LE LSLRFCG+ AGCR ++SAL K+ +AS GI L L GN LGD GA++LA+ALK++ +L+ LDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + DG +++ L+ + L R+ RS Q + + LGL N IG G ALA +L+ L L+L+GN L A K G+T ++ L K A ++SL Q VDE Y+
Sbjct: 55 IDLSFSHVGPVGASEVLSGLSEA------------------------------SAAPSGLLLQECSLGDRGALDVVSSTLVSSPEGVGVLSLRHNHIGRVGSRSLLQHLRT-APDRLQTLVLDFNLIGDAGLQPLPALLKDSSN---GRLESLSLRFCGISAAGCRSIASALSKAQVNASD-----------------------------------------RGIRHLSLAGNPLGDAGAKALAAALKQNVALEELDLTRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDGASSIQRLDLDHNHIADGGAFAFARALSAKQGRNPASRSAQQQQQHAPPGVALGLVANGIGCEGCSALATALAYNC----RLESLDLSGNPLFGAAPKAKKGATGTAKALLTKQATSVVSSLGKLYTQFVDETYV 415 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1087.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1087.746.1 >prot_D-dichotoma_M_contig1087.746.1 ID=prot_D-dichotoma_M_contig1087.746.1|Name=mRNA_D-dichotoma_M_contig1087.746.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=1050bp MVWVVKYIRFKSSSFACCITLLGKFAYCIGSTPPVGEQRQITANFNADTNback to top mRNA from alignment at D-dichotoma_M_contig1087:144694..153092- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1087.746.1 ID=mRNA_D-dichotoma_M_contig1087.746.1|Name=mRNA_D-dichotoma_M_contig1087.746.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=8399bp|location=Sequence derived from alignment at D-dichotoma_M_contig1087:144694..153092- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1087:144694..153092- >mRNA_D-dichotoma_M_contig1087.746.1 ID=mRNA_D-dichotoma_M_contig1087.746.1|Name=mRNA_D-dichotoma_M_contig1087.746.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=6300bp|location=Sequence derived from alignment at D-dichotoma_M_contig1087:144694..153092- (Dictyota dichotoma ODC1387m male)back to top |