mRNA_D-dichotoma_M_contig1086.737.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1086.737.1
Unique NamemRNA_D-dichotoma_M_contig1086.737.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1086.737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1086contigD-dichotoma_M_contig1086:140534..141506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size245
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1086.737.1prot_D-dichotoma_M_contig1086.737.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1086 140534..141495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927584.0536742-CDS-D-dichotoma_M_contig1086:140533..1407461622927584.0536742-CDS-D-dichotoma_M_contig1086:140533..140746Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1086 140534..140746 -
1690798048.2777479-CDS-D-dichotoma_M_contig1086:140533..1407461690798048.2777479-CDS-D-dichotoma_M_contig1086:140533..140746Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1086 140534..140746 -
1622927584.0677412-CDS-D-dichotoma_M_contig1086:141474..1414951622927584.0677412-CDS-D-dichotoma_M_contig1086:141474..141495Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1086 141475..141495 -
1690798048.285248-CDS-D-dichotoma_M_contig1086:141474..1414951690798048.285248-CDS-D-dichotoma_M_contig1086:141474..141495Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1086 141475..141495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927584.0814877-UTR-D-dichotoma_M_contig1086:141495..1415061622927584.0814877-UTR-D-dichotoma_M_contig1086:141495..141506Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1086 141496..141506 -
1690798048.2934358-UTR-D-dichotoma_M_contig1086:141495..1415061690798048.2934358-UTR-D-dichotoma_M_contig1086:141495..141506Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1086 141496..141506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1086.737.1

>prot_D-dichotoma_M_contig1086.737.1 ID=prot_D-dichotoma_M_contig1086.737.1|Name=mRNA_D-dichotoma_M_contig1086.737.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=78bp
MAFPSKVALADGTSYSYFVLMWNKHCPQVRLKKAMRFAKCDLCVLATEAL
DRARANGGRGWQTEAMTVIQQSLEDHYR
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mRNA from alignment at D-dichotoma_M_contig1086:140534..141506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1086.737.1 ID=mRNA_D-dichotoma_M_contig1086.737.1|Name=mRNA_D-dichotoma_M_contig1086.737.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=973bp|location=Sequence derived from alignment at D-dichotoma_M_contig1086:140534..141506- (Dictyota dichotoma ODC1387m male)
TATACATCCACATGGCTTTTCCGAGCAAGGTGGTGAGTTGTAATGCTCTG
GTCGAGAGGCGGCTGTGTGCGGTAATCGCTGTTGTTTTTTCGTATCTGTA
CACATCGGAGTATCCACCGCTTGTAGAAAACGAATCAAGACAACCTATCC
TAGTAGCAGCGAAGAATTCAATGCTTGCCTACTCATGTCGTTAAGCTTTG
TCTTGTAATTCAAGTATTTCGTCCATGTAGCAACGAGGTTTTTCCAAAGT
TTCTGCGATCTTCGCCAAAGACACCGATATGTATATTGAGAAACACGCAC
GTCCAGGGGCTAGCTCTAAGAAGGTACACAGGTGTACACTCGCCTCCCTG
AGAGCTCTTTCTAACCTGTTCACACGTTGGGAACGAACACGTTGTCAAGG
TGATAATACGCGTATTATCACCTTGACAACGTGTTCCCAACGTGTGATGA
GATCAGAAACAGCTCTAAGGGGGGATGAGTGTACACCTGTGTAGTAGCGG
GCCGAAAAGAAAATTAAAGAAAGAAAAATACGCCACTCCTCTTTATTTTT
TTTTGTTTGAATGGGGGGGGGCGGAGGAAACGTTGAGCAGTTCAGAGCAA
GGCGGCAACACACACTTTGAATCACTCGTTGTGTCCCTCATCGCTCACCC
TGTGTGCAAACTAGGAGAAGTGCCACTCTTGGCTTCCTCACGTCTTACAG
CGCTCCTCTTGCGCGCCTTCCCATGATAATGCTGTCTTCCTCGCGAGCGT
TGCGTGCCAGGCCCTGGCGGACGGCACTAGTTACTCGTATTTCGTTCTTA
TGTGGAACAAGCATTGCCCTCAGGTCCGCTTGAAGAAAGCAATGCGCTTT
GCGAAATGCGATTTGTGCGTGTTGGCTACGGAGGCTCTTGACCGTGCGCG
AGCGAATGGCGGCCGCGGGTGGCAGACTGAGGCCATGACCGTGATCCAGC
AAAGTCTAGAAGATCACTACCGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1086:140534..141506-

>mRNA_D-dichotoma_M_contig1086.737.1 ID=mRNA_D-dichotoma_M_contig1086.737.1|Name=mRNA_D-dichotoma_M_contig1086.737.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=468bp|location=Sequence derived from alignment at D-dichotoma_M_contig1086:140534..141506- (Dictyota dichotoma ODC1387m male)
ATGGCTTTTCCGAGCAAGGTGATGGCTTTTCCGAGCAAGGTGGCCCTGGC
GGACGGCACTAGTTACTCGTATTTCGTTCTTATGTGGAACAAGCATTGCC
CTCAGGTCCGCTTGAAGAAAGCAATGCGCTTTGCGAAATGCGATTTGTGC
GTGTTGGCTACGGAGGCTCTTGACCGTGCGCGAGCGAATGGCGGCCGCGG
GTGGCAGACTGAGGCCATGACCGTGATCCAGCAAAGTCTAGAAGATCACT
ACCGGGCCCTGGCGGACGGCACTAGTTACTCGTATTTCGTTCTTATGTGG
AACAAGCATTGCCCTCAGGTCCGCTTGAAGAAAGCAATGCGCTTTGCGAA
ATGCGATTTGTGCGTGTTGGCTACGGAGGCTCTTGACCGTGCGCGAGCGA
ATGGCGGCCGCGGGTGGCAGACTGAGGCCATGACCGTGATCCAGCAAAGT
CTAGAAGATCACTACCGG
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