mRNA_D-dichotoma_M_contig1085.730.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1085.730.1
Unique NamemRNA_D-dichotoma_M_contig1085.730.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1085.730.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 164 bits (415), Expect = 1.450e-43
Identity = 95/175 (54.29%), Postives = 120/175 (68.57%), Query Frame = 1 
Query:    4 LTKSAASEFDSWLEWTLAAITMGPAKMGELS--EPG*NGLPPNTTAPCQSVLTPEAIRQARLPIREGGQGLPSAIDLSRPAFIGGQALVLARAMVASNSPCLASALSGLATTPHARALCDELRNLTSFASGPQIAEMVGISWAALALDQDPDKRGRGNLLVEAGXXXXXXXXPRP 522
            LTK AASEFD  +E TL  I  GP++ GE +  EP       N+ +  +  L+P  IRQARLP+REGG G+PS +D+S PAFIGGQALVLARA+VA+N+  L+  L+ LA TP+A+AL  ELR L  +ASG +I EMVG SWAA+AL++DP  RG G LLVEAG        P+P
Sbjct: 1526 LTKEAASEFDKSVEQTLETILNGPSQPGEHAPHEP----TEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAFIGGQALVLARALVATNATNLSHELAVLAETPYAQALTGELRKLPKYASGSEITEMVGTSWAAIALNKDPANRGLGTLLVEAGASGTSPSRPKP 1696
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1085.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN1.450e-4354.29Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1085contigD-dichotoma_M_contig1085:58109..58653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size545
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1085.730.1prot_D-dichotoma_M_contig1085.730.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1085 58144..58464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.3362644-UTR-D-dichotoma_M_contig1085:58108..581431622927583.3362644-UTR-D-dichotoma_M_contig1085:58108..58143Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1085 58109..58143 +
1690798047.8487568-UTR-D-dichotoma_M_contig1085:58108..581431690798047.8487568-UTR-D-dichotoma_M_contig1085:58108..58143Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1085 58109..58143 +
1622927583.3606846-UTR-D-dichotoma_M_contig1085:58464..586531622927583.3606846-UTR-D-dichotoma_M_contig1085:58464..58653Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1085 58465..58653 +
1690798047.8713503-UTR-D-dichotoma_M_contig1085:58464..586531690798047.8713503-UTR-D-dichotoma_M_contig1085:58464..58653Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1085 58465..58653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.347705-CDS-D-dichotoma_M_contig1085:58143..584641622927583.347705-CDS-D-dichotoma_M_contig1085:58143..58464Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1085 58144..58464 +
1690798047.860143-CDS-D-dichotoma_M_contig1085:58143..584641690798047.860143-CDS-D-dichotoma_M_contig1085:58143..58464Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1085 58144..58464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1085.730.1

>prot_D-dichotoma_M_contig1085.730.1 ID=prot_D-dichotoma_M_contig1085.730.1|Name=mRNA_D-dichotoma_M_contig1085.730.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=107bp
MARMDAGCHHHGPGQDGGTLRAWMKRTPPKHYGTLPVGANPGGYPPSPPA
YPRRRPRPPKRHRPKQTGFHRRPSPSPGPGHGCFQQPMPRQRALGPSHHP
SRPGAL*
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mRNA from alignment at D-dichotoma_M_contig1085:58109..58653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1085.730.1 ID=mRNA_D-dichotoma_M_contig1085.730.1|Name=mRNA_D-dichotoma_M_contig1085.730.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=545bp|location=Sequence derived from alignment at D-dichotoma_M_contig1085:58109..58653+ (Dictyota dichotoma ODC1387m male)
GCCCTCACCAAGTCCGCAGCTTCGGAATTCGACTCATGGCTCGAATGGAC
GCTGGCTGCCATCACCATGGGCCCGGCCAAGATGGGGGAACTCTCCGAGC
CTGGATGAAACGGACTCCCCCCAAACACTACGGCACCCTGCCAGTCGGTG
CTAACCCCGGAGGCTATCCGCCAAGCCCGCCTGCCTATCCGCGAAGGCGG
CCAAGGCCTCCCAAGCGCCATCGACCTAAGCAGACCGGCTTTCATCGGAG
GCCAAGCCCTAGTCCTGGCCCGGGCCATGGTTGCTTCCAACAGCCCATGC
CTCGCCAGCGCGCTCTCGGGCCTAGCCACCACCCCTCACGCCCGGGCGCT
CTGTGACGAACTCCGCAACCTCACCTCCTTCGCCTCCGGACCCCAGATCG
CGGAGATGGTTGGCATTTCCTGGGCGGCTCTGGCCCTTGATCAGGACCCT
GACAAGAGGGGTCGAGGAAACCTCCTGGTCGAAGCGGGAGCGACCGCGAC
GAGCACCGCTAGCCCCAGACCTCGAATGGACACGACTGGGCAGCC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1085:58109..58653+

>mRNA_D-dichotoma_M_contig1085.730.1 ID=mRNA_D-dichotoma_M_contig1085.730.1|Name=mRNA_D-dichotoma_M_contig1085.730.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=642bp|location=Sequence derived from alignment at D-dichotoma_M_contig1085:58109..58653+ (Dictyota dichotoma ODC1387m male)
ATGGCTCGAATGGACGCTGGCTGCCATCACCATGGGCCCGGCCAAGATGG
GGGAACTCTCCGAGCCTGGATGAAACGGACTCCCCCCAAACACTACGGCA
CCCTGCCAGTCGGTGCTAACCCCGGAGGCTATCCGCCAAGCCCGCCTGCC
TATCCGCGAAGGCGGCCAAGGCCTCCCAAGCGCCATCGACCTAAGCAGAC
CGGCTTTCATCGGAGGCCAAGCCCTAGTCCTGGCCCGGGCCATGGTTGCT
TCCAACAGCCCATGCCTCGCCAGCGCGCTCTCGGGCCTAGCCACCACCCC
TCACGCCCGGGCGCTCTGTGAATGGCTCGAATGGACGCTGGCTGCCATCA
CCATGGGCCCGGCCAAGATGGGGGAACTCTCCGAGCCTGGATGAAACGGA
CTCCCCCCAAACACTACGGCACCCTGCCAGTCGGTGCTAACCCCGGAGGC
TATCCGCCAAGCCCGCCTGCCTATCCGCGAAGGCGGCCAAGGCCTCCCAA
GCGCCATCGACCTAAGCAGACCGGCTTTCATCGGAGGCCAAGCCCTAGTC
CTGGCCCGGGCCATGGTTGCTTCCAACAGCCCATGCCTCGCCAGCGCGCT
CTCGGGCCTAGCCACCACCCCTCACGCCCGGGCGCTCTGTGA
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