mRNA_D-dichotoma_M_contig1080.702.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1080.702.1 vs. uniprot
Match: A0A6H5KEL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL6_9PHAE) HSP 1 Score: 882 bits (2280), Expect = 6.020e-293 Identity = 572/1160 (49.31%), Postives = 749/1160 (64.57%), Query Frame = 3
Query: 165 MGKP--SKGAAIRIVDPKLVEFINAAAAGDVRMTEKLIKSGSVEVDDDEDGVTALMRACGNGHMEVVEKLLITYGAGMWCMGPSDDPMTPFMWAAHHGQLEIVRYFVEEVGMDDLGLNTGAGKSGKKTAMDFALDAGY-CDEKTIARKFDVQAYLLEKGAKYGEGVTDPQTVFDGAARGDERYVHFCLEANGKMVHEPYGLERSTLLHVAANTGSLELTKILISHEANMEARDVLDRTPLMSAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLSRDVPSADAEDSEATAITKAMIRGDAPESRPPPRQLSPCEMLQMKNKSGHTPIIKAFAGGVHVDVIRYVVGAMDGNVDPIRAGQLCADPHPVLSRQLSTDGIDLI---TLPPIQEDSGQIDSSAAGGIFSCTADEEKE-EPLDKEANETQEMKEEVSTRD---LAPGGAFQVRVPPGPATLGHRRSVRFLDTMTSSIWGFDAGKVCVMSRVAFLSQEKVIDHRDAKKLDMLVSLMEVPPRANLLYVVHRWSGPDQADNDSNDAYMQLKRYLEEPAGENIHYIWIDASCLDVHDRESVSYDQYMINVIPVISRSTHLLALPPCNKLDPVGLMRDMVMAKM--------SSTGNLKMANTKPSVTMSLG--SQVP-------GAGEAAHIFGATTRHRRGTSAMIERVVTEAIDVAIAARKEADPEKWALVPTT---------VPAKSNGDASAGSPAVEEEKGGVEGVADVPANGVAGGGRGFTGGXXXXXXXXXSQVSGGVAGIGGDRGRGSMVPTRKSSAGGLASGPKAPRSGGREDASXXXXXXXXXXXXXXXXXXXXXXXXXXLTKKERKALEEQTAREDASKMAAEVVEEIGQTSAFIVEPVYYSDPVALLNRGWVEMEVSMALIFGVQVHVAIRWGPKISFQTVLVKPVRAGDGEGDAQAVGFRGAFMQAIERIAPEPEIEKGWWVELKRNLKGAEPTADPAVPVAMTINNKLRHCHEPQTVVPPLVRAALALHDEKALLPFLAGELSPVQVMYQLTGLALQDVKDGFSGLGPISVESDRVLLVRLYLMGLSYAMGIVPKGTTPAGKPRWQLERDLVDAAQRIQVLEDEVTQLR-----QQEKTTEVKVQEPPPVVESSGCKCVVM 3521
MGK +K AA++ V P+++EFI+AAA GD +K+ K+G +EVDDD DGVTALMRACGNGH++ VE+LL+ +GAGMWC GP+ DP TPFMWAAHHG+L+I+RYFVEEVG+DDL +N AG+SG+KTA+D+ALDAG DE RK V AYL E GA++GEGVTDP+TVF+GAA GD YVH+CLEANG ++ +G ERS+LLHVA NTG+++LT+ LISH A++EAR+ ++RTPL++A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALL+RD P+A A S+ AI A++ GDAPE +PP R LSP E+L MKNK+GHTP+IKAFAGGVHV VIRYVVG DGNVDPI+ G L AD +LSRQL+TDGI L T PP +E G+ +GG+F+C D + EP+ N +E+++E +D + G + V VPPGP++ GHRR RF+DTM +++WGFD +V V+++ A L+Q + ++A++ +L + + P A +LYV HRW+G + D A +Q++RYL+E +G+NI YIWID SC+DV +R++V Y+QYM NV+ V++RSTH+LA+PPC LDP L+RDM +A++ S LKM T S + G S P G + I R +G A + + + E +D AI +R+ + P+KW+ + XXXX + S G+G + V T ++ G GP P L+KKE+K L AREDA++ AAEV ++ QT + EP+ +SDP ALLNRGWVEMEVS+AL+FGV+V V +RWGPK++FQ+VL + + + DGE Q GF+GAF+ I RIAP+ E KG+ V +KR L G E TADP VPV + L HCHEPQTVV PLVRA+LALH+E ALLPFLAG++SPV +MY+L+GLALQDVKDGF GLGPIS E+DRV LVRLYL+GLSYAMGIVPKG GKP++Q+ +D +A +R+ LE E+ L+ Q E+ PPP S+GC CVVM
Sbjct: 1 MGKKDRAKNAALQ-VSPQVLEFIDAAAIGDTNTVKKIAKAGKIEVDDDADGVTALMRACGNGHLKTVEELLL-HGAGMWCAGPTSDPKTPFMWAAHHGRLDIIRYFVEEVGLDDLAINKAAGRSGRKTALDYALDAGINLDEGAKDRKALVLAYLHENGAEHGEGVTDPETVFNGAAHGDVNYVHYCLEANGSIIKSSHGAERSSLLHVACNTGNIDLTQNLISHGADLEARNAVERTPLITAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLARDCPAA-APGSDDGAIVGAILEGDAPEHQPPARILSPHELLVMKNKAGHTPVIKAFAGGVHVAVIRYVVGVQDGNVDPIKCGVLGADLPSLLSRQLATDGIALNPPPTPPPGEE--GEETKEKSGGLFTCGEDNADDVEPV----NSPRELEQETKDQDHFFASNGVPYPVFVPPGPSSQGHRRMARFVDTMKNAVWGFDPEQVFVLTKPAVLAQSYMPTFKEAQERHLLEPMSSLHPAAKVLYVSHRWAGIGEPDTQDAHALLQVQRYLKEHSGDNIQYIWIDVSCMDVGNRDNVRYEQYMSNVVTVLARSTHMLAVPPCKTLDPRALVRDMTVARLVEKQTAEGKSPEYLKMLPTTTSNAVGSGFASAAPFLANGGGGPAPSTTIGSGGGRKTKGNEA-VAKAIEEEVDAAILSRQLSHPDKWSSLVVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRASGRKSRXXXGMGSRKSSAVEVKTETTAVGDR--GPGVP----------------------------------VLSKKEKKELLVAQAREDAAEAAAEVTHDVSQTPTVLKEPILHSDPAALLNRGWVEMEVSLALVFGVEVLVCVRWGPKVTFQSVLARTLVSEDGESVEQGPGFKGAFLHGIARIAPDVEEVKGFVVGVKRALIGPERTADPTVPVRVVYEPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDVSPVDIMYRLSGLALQDVKDGFGGLGPISDENDRVTLVRLYLLGLSYAMGIVPKGKEAVGKPKFQIIKDYEEAQKRVGDLEREMEGLKNRVTAQPEEAPRAATLPPPP---SAGCGCVVM 1111
BLAST of mRNA_D-dichotoma_M_contig1080.702.1 vs. uniprot
Match: D7G1T1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T1_ECTSI) HSP 1 Score: 852 bits (2201), Expect = 6.020e-280 Identity = 542/1073 (50.51%), Postives = 702/1073 (65.42%), Query Frame = 3
Query: 165 MGKP--SKGAAIRIVDPKLVEFINAAAAGDVRMTEKLIKSGSVEVDDDEDGVTALMRACGNGHMEVVEKLLITYGAGMWCMGPSDDPMTPFMWAAHHGQLEIVRYFVEEVGMDDLGLNTGAGKSGKKTAMDFALDAGY-CDEKTIARKFDVQAYLLEKGAKYGEGVTDPQTVFDGAARGDERYVHFCLEANGKMVHEPYGLERSTLLHVAANTGSLELTKILISHEANMEARDVLDRTPLMSAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLSRDVPSADAEDSEATAITKAMIRGDAPESRPPPRQLSPCEMLQMKNKSGHTPIIKAFAGGVHVDVIRYVVGAMDGNVDPIRAGQLCADPHPVLSRQLSTDGIDLITLPPIQEDSGQID-SSAAGGIFSCTAD--EEKEEPLDKEANETQEMKEEVSTRDLAPGGAFQVRVPPGPATLGHRRSVRFLDTMTSSIWGFDAGKVCVMSRVAFLSQEKVIDHRDAKKLDMLVSLMEVPPRANLLYVVHRWSGPDQADNDSNDAYMQLKRYLEEPAGENIHYIWIDASCLDVHDRESVSYDQYMINVIPVISRSTHLLALPPCNKLDPVGLMRDMVMAKMSSTGNLKMANTKPSVTMSLGSQVPGAGEAAHIFGATTRHRRGTSAMIERVVTEAIDVAIAARKEADPEKWALVPTTVPAKSNGDASAGSPAVEEEKGGVEGVADVPANGVAGGGRGFTGGXXXXXXXXXSQVSGGVAGIGGDRGRGSMVPTRKSSAGGLASGPKAPRSGGREDASXXXXXXXXXXXXXXXXXXXXXXXXXXLTKKERKALEEQTAREDASKMAAEVVEEIGQTSAFIVEPVYYSDPVALLNRGWVEMEVSMALIFGVQVHVAIRWGPKISFQTVLVKPVRAGDGEGDAQAVGFRGAFMQAIERIAPEPEIEKGWWVELKRNLKGAEPTADPAVPVAMTINNKLRHCHEPQTVVPPLVRAALALHDEKALLPFLAGELSPVQVMYQLTGLALQDVKDGFSGLGPISVESDRVLLVRLYLMGLSYAMGIVPKGTTPAGKPR 3365
MGK +K AA+ V+P ++EFI+AA GD + +K+ K+G +EVDDD DGVTALMRACGNGH++ VE+LL+ +GAGMWC GP+ DP TPFMWAAHHG+L+I+RYF+EEVG+DDL +N GAG+SG+KTA+D+ALDAG+ DE+ RK V AYL E GA++GEGVTDP+TVFDGAARGD YVH+CLEANG ++ +G E S+LLHVA NTG+ +LT+ LISH A++EAR+ ++ TPL+SAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+RD P+A A S+ AI A++ G+APE +PP R LSP E+L MKNK+GHTP+IKAFAGGVHV VIRYVVG DGNVDP++ G AD +LSRQL+TDGI L +GG+F+C D +E EP+D QE K + + + G + V VPPGP++ GHRR RF+DTM +++WGFD +V ++++ A L+Q + ++A++ +L + +PP A +LYV HRW+G + D A+MQ++RYL+E +G+NI YIWID SC+DV +R++V Y+QYM NV+ V++RSTH+LA+PPC LDP L+RDM +A++ + G++ G + + + + E +D AI +R+ + PEKW+ + AV+ GG XXXXXXXXX T+K SG K+ RS G L+KKE+K AREDA++ AAEV ++ QT + EPV +SDP ALLNRGWVEMEVS+AL+FGV+V V +RWGPK++FQ+VL + + + DGE Q GFRGAF+ I RIAP+ E KG+ V +KR L G E TADP VPV + L HCHEPQTVV PLVRA+LALH+E ALLPFLAG++SPV +MY+L+GLALQDVKDGF GLGPIS E+DRV LVRLYL+GLSYAMGIVPKG G R
Sbjct: 1 MGKKDRAKKAALE-VNPLVLEFIDAATIGDTKTVKKIAKAGKIEVDDDADGVTALMRACGNGHLKTVEELLV-HGAGMWCAGPTSDPKTPFMWAAHHGRLDIIRYFIEEVGLDDLAVNKGAGRSGRKTALDYALDAGFNLDEEAKDRKALVLAYLHENGAEHGEGVTDPETVFDGAARGDVNYVHYCLEANGSIIKLSHGAEGSSLLHVACNTGNTDLTQSLISHGADLEARNAVEGTPLISAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLARDCPAA-APGSDDGAIVGAILEGEAPEHQPPARILSPHELLVMKNKAGHTPVIKAFAGGVHVAVIRYVVGVQDGNVDPVKCGVPGADLPSLLSRQLATDGIALNPXXXXXXXXXXXXXKEKSGGLFTCGEDNADEDVEPVDSPRELEQETKNQENFF-ASNGVPYPVFVPPGPSSQGHRRMARFVDTMKNAVWGFDPEQVFLLTKPAVLAQSYMPTFKEAQEHHLLEPMSSLPPAAKVLYVSHRWTGIGEPDTQDAHAFMQVQRYLKEHSGDNIQYIWIDVSCMDVGNRDNVRYEQYMSNVVTVLARSTHMLAVPPCKTLDPRALVRDMTVARLVEKQTAE-------------------GKSPDYLGXXXGRKTKGDEAVSKAIEEEVDAAILSRQLSHPEKWSSL-----------------AVDSSDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXTKKG-----PSGRKSRRSSGMGSKKSSAMEVKTEITAVGDGGPGVPV----LSKKEKKGFLVAQAREDAAEAAAEVTHDVSQTPTVLTEPVLHSDPAALLNRGWVEMEVSLALVFGVEVLVCVRWGPKVTFQSVLARTLVSEDGETVEQGPGFRGAFLHGIARIAPDVEEVKGFVVGMKRALIGPERTADPTVPVRVVYEPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDVSPVDIMYRLSGLALQDVKDGFGGLGPISDENDRVTLVRLYLLGLSYAMGIVPKGKEAVGLRR 1022
BLAST of mRNA_D-dichotoma_M_contig1080.702.1 vs. uniprot
Match: A0A836CGH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGH2_9STRA) HSP 1 Score: 140 bits (354), Expect = 8.720e-30 Identity = 189/664 (28.46%), Postives = 264/664 (39.76%), Query Frame = 3
Query: 249 VRMTEKLIKSGSVEVDDDEDGVTALMRACGNGHMEVVEKLLITYGAGMWCMGPSDDPMTPFMWAAHHGQLEIVRYFVEEVGMDDLGLNTGAGKSGKKTAMDFALDAGYCDEKTIARKFDVQAYLLEKGAKYGEGVTDPQTVFDGAARGDERYVHFCLEANGKMVHEPYGLERSTLLHVAANTGSLELTKILISHEANMEARDVLDRTPLM----------------------------------SAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLSRDVPSADAEDSEATAITKAMIRGDAPESRPPPRQLSPCEMLQMKNKSGHTPIIKAFAGGVHVDVIRYVVGAMDGNVDPIRAGQLCADPHPVLSRQLSTDGIDLITLPPIQEDSGQIDSSAAGGIFSCTADEEKEEPLDKEANETQEMKEEVSTRDLAPGGAFQV-------RVPPGPATLGHRRSVRFLDTMTSSIWGFDAGKVCVMSRVAFLSQEKVIDHRDAKKLDMLVSLMEVPPRANLLYVVHRWSGPDQADNDSNDAYMQLKRYLEE----------PAGEN---------------IHYIWIDASC---------LDVHDRESVSYDQYM------------------INVIPVISRSTHLLALP 1961
+R +KL S +D D +GVT LM+AC GH +V L+ W GPS+DP F WAA HGQLEIVR+FVEE G D + T G+ +KTA+D+ L + DP E H E +V G ER TLLHVAA +L K+L+++ +AR T L +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLSR + E + T +L+M + SG T + AF GG H+ VIRY +D + L A +R + P ++ S + S +F +++ E PL++ +E++ R L+ G PP R RFL + ++WG+D +V V++R A LS K+ A LV L V AN+LYV H+W+ D D + + ++Q+K++LE P E I Y+W+D +C LD +++ S D + N I + R+TH LA+P
Sbjct: 1 MRTVKKLAADKSFGIDTDVNGVTGLMKACAYGHKAIVLHLVAAGAVNGWT-GPSEDPHNAFCWAAEHGQLEIVRWFVEESGGDFEVMCTNQGRHKRKTALDYVLQS-----------------------------IDP-----------EEQPHASAE---NIVALTAGKERHTLLHVAATGNHGDLAKVLLANGIKRDARSAEGLTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQWHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGHLSTCRVLLSRAASKVEVEMASTAMAT----------------------VLKMPDASGDTAVTLAFKGGPHIPVIRYFEEVLDSTPAEAQGSALAAXXXXXXARNV----------PALRHAS--MPSLGNVAMFDTADNDDDEMPLERLISESETAPNAPHIRTLSEGEESVTDEVDLWSEQPP--------RVARFLRALKPTVWGYDLARVFVITRGALLSHGKLPSFAQAHAKGALVPLTAVLGEANVLYVSHKWASADDPDPGA-ETFVQVKKFLETKCRPTPPPEPPLSETGSRTGPMEPEEPLPIIDYVWVDCACVPAPTDADALDAKVKQAASLDAHASRAASDYLPRIADAEAARANTITALLRATHFLAIP 577 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1080.702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1080.702.1 >prot_D-dichotoma_M_contig1080.702.1 ID=prot_D-dichotoma_M_contig1080.702.1|Name=mRNA_D-dichotoma_M_contig1080.702.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=1120bp MGKPSKGAAIRIVDPKLVEFINAAAAGDVRMTEKLIKSGSVEVDDDEDGVback to top mRNA from alignment at D-dichotoma_M_contig1080:157553..187584- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1080.702.1 ID=mRNA_D-dichotoma_M_contig1080.702.1|Name=mRNA_D-dichotoma_M_contig1080.702.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=30032bp|location=Sequence derived from alignment at D-dichotoma_M_contig1080:157553..187584- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1080:157553..187584- >mRNA_D-dichotoma_M_contig1080.702.1 ID=mRNA_D-dichotoma_M_contig1080.702.1|Name=mRNA_D-dichotoma_M_contig1080.702.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=6720bp|location=Sequence derived from alignment at D-dichotoma_M_contig1080:157553..187584- (Dictyota dichotoma ODC1387m male)back to top |