mRNA_D-dichotoma_M_contig108.697.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig108.697.1
Unique NamemRNA_D-dichotoma_M_contig108.697.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig108.697.1 vs. uniprot
Match: D8LC79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC79_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 3.570e-48
Identity = 85/131 (64.89%), Postives = 100/131 (76.34%), Query Frame = 3 
Query:  132 MDLETIESLKLGGQGIDGSPHWSRNEFRPRYCLSKDEVGARYHTHRFTCFDVAEKVESEHDILFAGRSTGVVVLWRIVPRNQYGGASKNDRLEEVLDTSSPHKGAVTCLTHTRLGTYAALGGPLVFSGSTD 524
            M LE +E L L G+G  GS HWSRN  RPRY L  DE       H FTCFDVAE+VE++HDI+FAGRS G VVLWR+V RN +GGA+KNDR++E L T+SPH+GAVTCLTHTR GTY +L GPL+FSGS D
Sbjct:    1 MHLEVVEVLALAGEGAAGS-HWSRNTARPRYSLGTDEAKQASFHHSFTCFDVAERVEADHDIVFAGRSNGAVVLWRMVARNMFGGANKNDRVQEPLITASPHRGAVTCLTHTRQGTYGSLIGPLMFSGSAD 130
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig108.697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC79_ECTSI3.570e-4864.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig108contigD-dichotoma_M_contig108:604625..605300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue3e-42
Seed eggNOG ortholog2880.D8LC79
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0032182,GO:0043130,GO:0044424,GO:0044464
EggNOG free text desc.regulation of protein monoubiquitination
EggNOG OGsKOG0308@1,KOG0308@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size524
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig108.697.1prot_D-dichotoma_M_contig108.697.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig108 604756..605300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.8681188-UTR-D-dichotoma_M_contig108:604624..6047551622927576.8681188-UTR-D-dichotoma_M_contig108:604624..604755Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 604625..604755 +
1690798045.05756-UTR-D-dichotoma_M_contig108:604624..6047551690798045.05756-UTR-D-dichotoma_M_contig108:604624..604755Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig108 604625..604755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927576.878872-CDS-D-dichotoma_M_contig108:604755..6049561622927576.878872-CDS-D-dichotoma_M_contig108:604755..604956Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 604756..604956 +
1690798045.0697608-CDS-D-dichotoma_M_contig108:604755..6049561690798045.0697608-CDS-D-dichotoma_M_contig108:604755..604956Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 604756..604956 +
1622927576.8905182-CDS-D-dichotoma_M_contig108:605108..6053001622927576.8905182-CDS-D-dichotoma_M_contig108:605108..605300Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 605109..605300 +
1690798045.0810585-CDS-D-dichotoma_M_contig108:605108..6053001690798045.0810585-CDS-D-dichotoma_M_contig108:605108..605300Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig108 605109..605300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig108.697.1

>prot_D-dichotoma_M_contig108.697.1 ID=prot_D-dichotoma_M_contig108.697.1|Name=mRNA_D-dichotoma_M_contig108.697.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=131bp
MDLETIESLKLGGQGIDGSPHWSRNEFRPRYCLSKDEVGARYHTHRFTCF
DVAEKVESEHDILFAGRSTGVVVLWRIVPRNQYGGASKNDRLEEVLDTSS
PHKGAVTCLTHTRLGTYAALGGPLVFSGSTD
back to top

mRNA from alignment at D-dichotoma_M_contig108:604625..605300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig108.697.1 ID=mRNA_D-dichotoma_M_contig108.697.1|Name=mRNA_D-dichotoma_M_contig108.697.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=676bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:604625..605300+ (Dictyota dichotoma ODC1387m male)
CGCTCTCCGTTCGTCGGGGTTATGGAATGGACGCATGACCGAAGTAGCTA
TCCGCGAGGATCTTCGATTATTCCATCAAACCCAGCTTGACGGAATGGTT
TAGTTTCTTTATACAGTACAGGATATGGGTTATGGATCTCGAAACGATTG
AGTCGCTGAAACTCGGAGGCCAAGGGATTGACGGCTCCCCGCATTGGTCT
CGAAACGAATTTCGTCCAAGATACTGTCTAAGCAAGGACGAGGTCGGAGC
TCGATACCATACCCACAGGTTTACATGCTTCGATGTCGCGGAGAAAGTGG
AGTCGGAGCACGACATTCTCTTCGCGGGCCGGGTGAGCCACCCTTACATA
TCGAGAAGGTTCAGAAAGAACAAGTCGAATCTGGCTATCTAAAAGACGTG
CCTGTGCACGCTACCCATTACCCCCCTGGACGCCACCTCCTGCCTCGTGC
GTTACGGCTCGACTTGATCATCCCAACCCTGCAGAGTACAGGAGTTGTGG
TCCTCTGGAGAATTGTTCCGCGTAATCAATACGGGGGAGCTAGTAAGAAC
GATCGACTTGAAGAGGTTCTTGATACGTCGTCACCTCACAAGGGAGCCGT
GACATGCCTCACTCACACTCGGCTTGGAACGTACGCCGCTTTGGGAGGGC
CGCTGGTGTTCAGCGGATCAACAGAC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig108:604625..605300+

>mRNA_D-dichotoma_M_contig108.697.1 ID=mRNA_D-dichotoma_M_contig108.697.1|Name=mRNA_D-dichotoma_M_contig108.697.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=786bp|location=Sequence derived from alignment at D-dichotoma_M_contig108:604625..605300+ (Dictyota dichotoma ODC1387m male)
ATGGATCTCGAAACGATTGAGTCGCTGAAACTCGGAGGCCAAGGGATTGA
CGGCTCCCCGCATTGGTCTCGAAACGAATTTCGTCCAAGATACTGTCTAA
GCAAGGACGAGGTCGGAGCTCGATACCATACCCACAGGTTTACATGCTTC
GATGTCGCGGAGAAAGTGGAGTCGGAGCACGACATTCTCTTCGCGGGCCG
GATGGATCTCGAAACGATTGAGTCGCTGAAACTCGGAGGCCAAGGGATTG
ACGGCTCCCCGCATTGGTCTCGAAACGAATTTCGTCCAAGATACTGTCTA
AGCAAGGACGAGGTCGGAGCTCGATACCATACCCACAGGTTTACATGCTT
CGATGTCGCGGAGAAAGTGGAGTCGGAGCACGACATTCTCTTCGCGGGCC
GGAGTACAGGAGTTGTGGTCCTCTGGAGAATTGTTCCGCGTAATCAATAC
GGGGGAGCTAGTAAGAACGATCGACTTGAAGAGGTTCTTGATACGTCGTC
ACCTCACAAGGGAGCCGTGACATGCCTCACTCACACTCGGCTTGGAACGT
ACGCCGCTTTGGGAGGGCCGCTGGTGTTCAGCGGATCAACAGACAGTACA
GGAGTTGTGGTCCTCTGGAGAATTGTTCCGCGTAATCAATACGGGGGAGC
TAGTAAGAACGATCGACTTGAAGAGGTTCTTGATACGTCGTCACCTCACA
AGGGAGCCGTGACATGCCTCACTCACACTCGGCTTGGAACGTACGCCGCT
TTGGGAGGGCCGCTGGTGTTCAGCGGATCAACAGAC
back to top